Spg018007 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg018007
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Locationscaffold9: 31558504 .. 31560043 (-)
RNA-Seq ExpressionSpg018007
SyntenySpg018007
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGATTTCTGGACGAATCTGTTGGGCATCTCGTTTTCATCCCTTCAGGTAAGTTGTAGAGGGTTTGAAATGAAGAGTTTGATATATGGTACATTAATTTTGGTCAAGTATTGAGGTAGTTATGAGTGTGGGAAATCAGGGTATTGAATCTGGAAAATCTAGAAAACAATTTGAAGTGCAATTTTAATTAAAGTGTTTAGAATTCATGAGCATGGAAAGACAAGACTGGTTATGGTTCTAATGCTCGGTGTTGGTTTGTTTGACAGGCCGAGAGGAAATAGGCCGAGTCTACAGACCAGGGAACTAGCCAAGACTGTGAGTGACAAAACAAATTTCGAAAATTATTTCTAAACTGTCGTTTATGCGTTGACGTTTTATATGCTTTTCTATGAATGGTTTCAAGCATAAGTCTCGAGCTTAGATTTTCTAATGAAATTTATATGTGAGCATGTGATTATTGATTTTCTGAAAAGTAGTTGAAACGATATCATTTTAAGCAAAGTATGTGTTAGCAAGTATTGCTTACAGATTTTCGATTTTCACGAGCAAGCTAAGTAAGCTTGAGTTTTACGAAAAATAAAGATAAGCAGGCATGTTTTAAGGTTTTCATGTGATTTTCTGAGACTTCTAATGACTACATGATTGAGATATTGAGCCCGAGGCTAGATGATACCATGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTATCATGCGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGTTGGGCGGGCCCCACTACATCGTAGAGCTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTTGATCGGTCATGTTAGCTAAAGTGTTTGATATACTTGATATGCATTGCTAGATTTTAATGACGTACTGCGGGTTATTTGAGAAAGCTTTTATCGTTACACGTTTATGTTAAACGCTTTGATTGAACAAATTTACACGTTTAAAGGTTTAACACGTGTTCTTATTTCCGAGTTTACAGTTTTAAATTTAGTCACTCACTGGGCTTCATAACTCACTCTTTCAAAATGTTTTCCCACTTTCTAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGGTCAAGCTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTGTCTATATTGTAAATGTCTTTGTAAGGATTGGATAATTTACGGTTTGTGTAAGTTCTAGAGGTCGTGGTTGTATGAACCCCAGTTGAGTACGTTTTTGGTTGTGTTATCTATATCAGGTTATTTCCCAAGTCGAGTTATGTCAGGGCTGCACCCCATGTATGTCTAAAGTTTTCAGGGATTCCGCTGTGTTGCGTTACATGTAAAGTATTTTTATTTCTAAGAGTTGTATGTTTATCAAGTTCAGCGATTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATATCCCTAACTAAGCTAGTAGGTAGTTTGGGAGGGGGTGTGACAACTTGA

mRNA sequence

GGGATTTCTGGACGAATCTGTTGGGCATCTCGTTTTCATCCCTTCAGGCCGAGAGGAAATAGGCCGAGTCTACAGACCAGGGAACTAGCCAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGGTCAAGCTCCAGTTATTTCCCAAGTCGAGTTATGTCAGGGCTGCACCCCATTTCAGCGATTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATATCCCTAACTAAGCTAGTAGGTAGTTTGGGAGGGGGTGTGACAACTTGA

Coding sequence (CDS)

GGGATTTCTGGACGAATCTGTTGGGCATCTCGTTTTCATCCCTTCAGGCCGAGAGGAAATAGGCCGAGTCTACAGACCAGGGAACTAGCCAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGGTCAAGCTCCAGTTATTTCCCAAGTCGAGTTATGTCAGGGCTGCACCCCATTTCAGCGATTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATATCCCTAACTAAGCTAGTAGGTAGTTTGGGAGGGGGTGTGACAACTTGA

Protein sequence

GISGRICWASRFHPFRPRGNRPSLQTRELAKTVEIELPVPDTLPTSAESSRSSSSYFPSRVMSGLHPISAIQQGQQVSLEEDDVCWLHAISLTKLVGSLGGGVTT
Homology
[Close]
BLAST of Spg018007 vs. NCBI nr
Match: KAA0064296.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK01032.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-15
Identity = 54/106 (50.94%), Postives = 63/106 (59.43%), Query Frame = 0 

Query: 16  RPRGNRPSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSSYFP 75
           +PRGN+PSLQT EL KT                 VEIEL VPDTLPTSAES  S+SSYF 
Sbjct: 554 KPRGNKPSLQTGELDKTVIFPLSTFSVLHDNDAVVEIELSVPDTLPTSAESYGSNSSYFT 613

Query: 76  SRVMSGLHPISAIQQGQQVSLEEDDVCWLHAISLTKLVGSLGGGVT 105
           ++VMSGLH +  +  G    +  DDVC LH +   K  G  GGGVT
Sbjct: 614 NQVMSGLHLVFNVSVGSTGIVRGDDVCCLHVVFRAKTAGGPGGGVT 659

[Close]
BLAST of Spg018007 vs. NCBI nr
Match: KAA0051980.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-14
Identity = 57/121 (47.11%), Postives = 65/121 (53.72%), Query Frame = 0 

Query: 16  RPRGNRPSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSS--- 75
           RPRGNR SLQT EL KT                 VEIELPVPDTLPTSAESS S+SS   
Sbjct: 30  RPRGNRTSLQTGELDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESSGSNSSTWL 89

Query: 76  -------------YFPSRVMSGLHPISAIQQGQQVSLEEDDVCWLHAISLTKLVGSLGGG 104
                        YF ++VMSGLH +  +  G    +  D+VCWLHA+   K  G  GGG
Sbjct: 90  ELNFEFVHVEIFYYFTNQVMSGLHLVFNVSVGSTRIVRGDNVCWLHAVFWAKTAGGPGGG 149

[Close]
BLAST of Spg018007 vs. NCBI nr
Match: KAA0058280.1 (uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-13
Identity = 59/120 (49.17%), Postives = 65/120 (54.17%), Query Frame = 0 

Query: 17  PRGNRPSLQTRELAKT---------------VEIELPVPDTLPTSAESSRSSSS-----Y 76
           PRGNR SLQTREL KT               V IELPVPD LPTSAESS S+SS     Y
Sbjct: 78  PRGNRLSLQTRELDKTVIFPLSTLSVLRDNNVVIELPVPDILPTSAESSGSNSSTWLELY 137

Query: 77  FPS-----------RVMSGLHPISAIQQGQQVSLEEDDVCWLHAISLTKLVGSLGGGVTT 106
           F S           +VMS LH +  +  G    +  DDVCWLHA+   K VG  GGGVTT
Sbjct: 138 FESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVTT 197

[Close]
BLAST of Spg018007 vs. NCBI nr
Match: KAA0062409.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-13
Identity = 56/121 (46.28%), Postives = 65/121 (53.72%), Query Frame = 0 

Query: 18  RGNRPSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSS----- 77
           RGNR SLQ+ EL  T                 VEIELPVPDTLPTSAESS S+SS     
Sbjct: 62  RGNRSSLQSGELDTTVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLEL 121

Query: 78  -----------YFPSRVMSGLHPISAIQQGQQVSLEEDDVCWLHAISLTKLVGSLGGGVT 106
                      YF ++VMS LH + ++  G    +  DDVCWLHA+   K VG  GGGVT
Sbjct: 122 YFESVHVEMFCYFTNQVMSRLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVT 181

[Close]
BLAST of Spg018007 vs. NCBI nr
Match: TYK26572.1 (putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-13
Identity = 56/121 (46.28%), Postives = 65/121 (53.72%), Query Frame = 0 

Query: 18  RGNRPSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSS----- 77
           RGNR SLQ+ EL  T                 VEIELPVPDTLPTSAESS S+SS     
Sbjct: 62  RGNRSSLQSGELDTTVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLEL 121

Query: 78  -----------YFPSRVMSGLHPISAIQQGQQVSLEEDDVCWLHAISLTKLVGSLGGGVT 106
                      YF ++VMS LH + ++  G    +  DDVCWLHA+   K VG  GGGVT
Sbjct: 122 YFESVHVEMFCYFTNQVMSRLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVT 181

[Close]
BLAST of Spg018007 vs. ExPASy TrEMBL
Match: A0A5A7VD33 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00370 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.9e-16
Identity = 54/106 (50.94%), Postives = 63/106 (59.43%), Query Frame = 0 

Query: 16  RPRGNRPSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSSYFP 75
           +PRGN+PSLQT EL KT                 VEIEL VPDTLPTSAES  S+SSYF 
Sbjct: 554 KPRGNKPSLQTGELDKTVIFPLSTFSVLHDNDAVVEIELSVPDTLPTSAESYGSNSSYFT 613

Query: 76  SRVMSGLHPISAIQQGQQVSLEEDDVCWLHAISLTKLVGSLGGGVT 105
           ++VMSGLH +  +  G    +  DDVC LH +   K  G  GGGVT
Sbjct: 614 NQVMSGLHLVFNVSVGSTGIVRGDDVCCLHVVFRAKTAGGPGGGVT 659

[Close]
BLAST of Spg018007 vs. ExPASy TrEMBL
Match: A0A5A7U9X4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002130 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.9e-15
Identity = 57/121 (47.11%), Postives = 65/121 (53.72%), Query Frame = 0 

Query: 16  RPRGNRPSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSS--- 75
           RPRGNR SLQT EL KT                 VEIELPVPDTLPTSAESS S+SS   
Sbjct: 30  RPRGNRTSLQTGELDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESSGSNSSTWL 89

Query: 76  -------------YFPSRVMSGLHPISAIQQGQQVSLEEDDVCWLHAISLTKLVGSLGGG 104
                        YF ++VMSGLH +  +  G    +  D+VCWLHA+   K  G  GGG
Sbjct: 90  ELNFEFVHVEIFYYFTNQVMSGLHLVFNVSVGSTRIVRGDNVCWLHAVFWAKTAGGPGGG 149

[Close]
BLAST of Spg018007 vs. ExPASy TrEMBL
Match: A0A5A7UT17 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006090 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.0e-14
Identity = 59/120 (49.17%), Postives = 65/120 (54.17%), Query Frame = 0 

Query: 17  PRGNRPSLQTRELAKT---------------VEIELPVPDTLPTSAESSRSSSS-----Y 76
           PRGNR SLQTREL KT               V IELPVPD LPTSAESS S+SS     Y
Sbjct: 78  PRGNRLSLQTRELDKTVIFPLSTLSVLRDNNVVIELPVPDILPTSAESSGSNSSTWLELY 137

Query: 77  FPS-----------RVMSGLHPISAIQQGQQVSLEEDDVCWLHAISLTKLVGSLGGGVTT 106
           F S           +VMS LH +  +  G    +  DDVCWLHA+   K VG  GGGVTT
Sbjct: 138 FESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVTT 197

[Close]
BLAST of Spg018007 vs. ExPASy TrEMBL
Match: A0A5A7V9N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G002110 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.0e-14
Identity = 56/121 (46.28%), Postives = 65/121 (53.72%), Query Frame = 0 

Query: 18  RGNRPSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSS----- 77
           RGNR SLQ+ EL  T                 VEIELPVPDTLPTSAESS S+SS     
Sbjct: 62  RGNRSSLQSGELDTTVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLEL 121

Query: 78  -----------YFPSRVMSGLHPISAIQQGQQVSLEEDDVCWLHAISLTKLVGSLGGGVT 106
                      YF ++VMS LH + ++  G    +  DDVCWLHA+   K VG  GGGVT
Sbjct: 122 YFESVHVEMFCYFTNQVMSRLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVT 181

[Close]
BLAST of Spg018007 vs. ExPASy TrEMBL
Match: A0A5D3DSY7 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001810 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.0e-14
Identity = 56/121 (46.28%), Postives = 65/121 (53.72%), Query Frame = 0 

Query: 18  RGNRPSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSS----- 77
           RGNR SLQ+ EL  T                 VEIELPVPDTLPTSAESS S+SS     
Sbjct: 62  RGNRSSLQSGELDTTVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLEL 121

Query: 78  -----------YFPSRVMSGLHPISAIQQGQQVSLEEDDVCWLHAISLTKLVGSLGGGVT 106
                      YF ++VMS LH + ++  G    +  DDVCWLHA+   K VG  GGGVT
Sbjct: 122 YFESVHVEMFCYFTNQVMSRLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPGGGVT 181

The following BLAST results are available for this feature:
BLAST of Spg018007 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0064296.11.4e-1550.94putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK... [more]
KAA0051980.11.2e-1447.11DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 D... [more]
KAA0058280.11.0e-1349.17uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa][more]
KAA0062409.11.0e-1346.28reverse transcriptase [Cucumis melo var. makuwa][more]
TYK26572.11.0e-1346.28putative Retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Spg018007 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg018007 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VD336.9e-1650.94Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7U9X45.9e-1547.11DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7UT175.0e-1449.17CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5A7V9N35.0e-1446.28Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15... [more]
A0A5D3DSY75.0e-1446.28Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
BLAST of Spg018007 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg018007.1Spg018007.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0003824 catalytic activity