Spg017987 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg017987
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Formin-like protein 4 isoform X2
Location	scaffold9: 29596086 .. 29596700 (-)
RNA-Seq Expression	Spg017987
Synteny	Spg017987

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTAGTCTTATTAGGAAGATGCAAAAAAGATTCTTCAACTCTTTCGCGATCATTAAATGTGATGTTATTAGGAAGAAATAGAAATAGATTTGCTTCTCAGGCATCTTAATGTTCTTAGCAAAACGACTGTGTGTGTGTGGATAAAGAGTGATATTGCACGTTTTCGACAAGCCAAGAGACATGGTCGTGCTATCATGTTTGGGTCAAAATCTAAGGCTCGAGCTGCTCTTCCTTTCACTCATAGAGGTGGCACTGCGACATTTCTACGCCATAAGCAGAAAAAGGTATGTACCTCATTCTTTTAATAATCTTATTTGATTCGTACTCACACTATAATTTTTATTATAACATACAGAAAGAAGAAGGGAAAGAGTTAACTGAAATTGAGTTATTTGAGCTTACTCATCGTAGTGAAAAGAATGGATGGGTGGATGAGGCAAAGAAAAAACACGTAAGTAAAAACTTTGTTATGGTTTTTTTTTAAAAAATTTTACAACATATCAATATTATTGTTAGATATTTTGTTATAGGACGAAATGGTGACATTAAAAACTGCTTCATCACAAGATGGCGGTGTAACTCTTCAAGACAAAGAGATATTGGAACGAGCACTA

mRNA sequence

ATGTTTGGGTCAAAATCTAAGGCTCGAGCTGCTCTTCCTTTCACTCATAGAGGTGGCACTGCGACATTTCTACGCCATAAGCAGAAAAAGAAAGAAGAAGGGAAAGAGTTAACTGAAATTGAGTTATTTGAGCTTACTCATCGTAGTGAAAAGAATGGATGGGTGGATGAGGCAAAGAAAAAACACGACGAAATGGTGACATTAAAAACTGCTTCATCACAAGATGGCGGTGTAACTCTTCAAGACAAAGAGATATTGGAACGAGCACTA

Coding sequence (CDS)

ATGTTTGGGTCAAAATCTAAGGCTCGAGCTGCTCTTCCTTTCACTCATAGAGGTGGCACTGCGACATTTCTACGCCATAAGCAGAAAAAGAAAGAAGAAGGGAAAGAGTTAACTGAAATTGAGTTATTTGAGCTTACTCATCGTAGTGAAAAGAATGGATGGGTGGATGAGGCAAAGAAAAAACACGACGAAATGGTGACATTAAAAACTGCTTCATCACAAGATGGCGGTGTAACTCTTCAAGACAAAGAGATATTGGAACGAGCACTA

Protein sequence

MFGSKSKARAALPFTHRGGTATFLRHKQKKKEEGKELTEIELFELTHRSEKNGWVDEAKKKHDEMVTLKTASSQDGGVTLQDKEILERAL

Homology

[Close]

BLAST of Spg017987 vs. NCBI nr
Match: KAE8651942.1 (hypothetical protein Csa_006405 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 1.8e-22
Identity = 58/87 (66.67%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 4   SKSKARAALPFTHRGGTATFLRHKQKKKEEGKELTEIELFELTHRSEKNGWVDEAKKKHD 63
           + +KAR+ LPFTHRGGT TFLRHKQK KEEGKE++ IELF+ TH  EK  WVDEAK K+D
Sbjct: 96  ANTKARSKLPFTHRGGTVTFLRHKQKMKEEGKEISNIELFQPTHSDEKKRWVDEAKAKYD 155

Query: 64  EMVTLKTASSQDGGVTLQDKEILERAL 91
           EMV LKT  SQ+G   L +KEI ER L
Sbjct: 156 EMVELKTTLSQEGSKLLLEKEICERVL 182

[Close]

BLAST of Spg017987 vs. NCBI nr
Match: TYK21104.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 4.4e-13
Identity = 41/65 (63.08%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 26  HKQKKKEEGKELTEIELFELTHRSEKNGWVDEAKKKHDEMVTLKTASSQDGGVTLQDKEI 85
           H   +KEEGKE++EIELF+LTH +EKNGWV+EAK+K+DEMV LKT SSQ+G   L ++EI
Sbjct: 48  HSPIEKEEGKEVSEIELFQLTHSNEKNGWVNEAKEKYDEMVELKTTSSQEGSEPLLEREI 107

Query: 86  LERAL 91
            +R L
Sbjct: 108 CDRVL 112

[Close]

BLAST of Spg017987 vs. NCBI nr
Match: KAA0036187.1 (uncharacterized protein E6C27_scaffold69G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 4.4e-13
Identity = 41/65 (63.08%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 26  HKQKKKEEGKELTEIELFELTHRSEKNGWVDEAKKKHDEMVTLKTASSQDGGVTLQDKEI 85
           H   +KEEGKE++EIELF+LTH +EKNGWV+EAK+K+DEMV LKT SSQ+G   L ++EI
Sbjct: 773 HSPIEKEEGKEVSEIELFQLTHSNEKNGWVNEAKEKYDEMVELKTTSSQEGSEPLLEREI 832

Query: 86  LERAL 91
            +R L
Sbjct: 833 CDRVL 837

[Close]

BLAST of Spg017987 vs. NCBI nr
Match: TYK04806.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 40/65 (61.54%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 26  HKQKKKEEGKELTEIELFELTHRSEKNGWVDEAKKKHDEMVTLKTASSQDGGVTLQDKEI 85
           H   +KEEGKE++EIELF+LTH +EKNGWV+EAK+K+DEMV LKT SSQ+G   L +++I
Sbjct: 167 HSPIEKEEGKEVSEIELFQLTHSNEKNGWVNEAKEKYDEMVELKTTSSQEGSEPLLERKI 226

Query: 86  LERAL 91
            +R L
Sbjct: 227 CDRVL 231

[Close]

BLAST of Spg017987 vs. NCBI nr
Match: KAA0060322.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa] >TYK22072.1 formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 40/65 (61.54%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 26  HKQKKKEEGKELTEIELFELTHRSEKNGWVDEAKKKHDEMVTLKTASSQDGGVTLQDKEI 85
           H   +KEEGKE++EIELF+LTH +EKNGWV+EAK+K+DEMV LKT SSQ+G   L +++I
Sbjct: 48  HSPIEKEEGKEVSEIELFQLTHSNEKNGWVNEAKEKYDEMVELKTTSSQEGSEPLLERKI 107

Query: 86  LERAL 91
            +R L
Sbjct: 108 CDRVL 112

[Close]

BLAST of Spg017987 vs. ExPASy TrEMBL
Match: A0A5D3DBZ5 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00730 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.1e-13
Identity = 41/65 (63.08%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 26  HKQKKKEEGKELTEIELFELTHRSEKNGWVDEAKKKHDEMVTLKTASSQDGGVTLQDKEI 85
           H   +KEEGKE++EIELF+LTH +EKNGWV+EAK+K+DEMV LKT SSQ+G   L ++EI
Sbjct: 48  HSPIEKEEGKEVSEIELFQLTHSNEKNGWVNEAKEKYDEMVELKTTSSQEGSEPLLEREI 107

Query: 86  LERAL 91
            +R L
Sbjct: 108 CDRVL 112

[Close]

BLAST of Spg017987 vs. ExPASy TrEMBL
Match: A0A5A7T3L6 (DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold69G00560 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.1e-13
Identity = 41/65 (63.08%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 26  HKQKKKEEGKELTEIELFELTHRSEKNGWVDEAKKKHDEMVTLKTASSQDGGVTLQDKEI 85
           H   +KEEGKE++EIELF+LTH +EKNGWV+EAK+K+DEMV LKT SSQ+G   L ++EI
Sbjct: 773 HSPIEKEEGKEVSEIELFQLTHSNEKNGWVNEAKEKYDEMVELKTTSSQEGSEPLLEREI 832

Query: 86  LERAL 91
            +R L
Sbjct: 833 CDRVL 837

[Close]

BLAST of Spg017987 vs. ExPASy TrEMBL
Match: A0A5A7UWU9 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00550 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.1e-13
Identity = 40/65 (61.54%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 26  HKQKKKEEGKELTEIELFELTHRSEKNGWVDEAKKKHDEMVTLKTASSQDGGVTLQDKEI 85
           H   +KEEGKE++EIELF+LTH +EKNGWV+EAK+K+DEMV LKT SSQ+G   L +++I
Sbjct: 48  HSPIEKEEGKEVSEIELFQLTHSNEKNGWVNEAKEKYDEMVELKTTSSQEGSEPLLERKI 107

Query: 86  LERAL 91
            +R L
Sbjct: 108 CDRVL 112

[Close]

BLAST of Spg017987 vs. ExPASy TrEMBL
Match: A0A5A7TVR8 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G001640 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.1e-13
Identity = 40/65 (61.54%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 26  HKQKKKEEGKELTEIELFELTHRSEKNGWVDEAKKKHDEMVTLKTASSQDGGVTLQDKEI 85
           H   +KEEGKE++EIELF+LTH +EKNGWV+EAK+K+DEMV LKT SSQ+G   L +++I
Sbjct: 150 HSPIEKEEGKEVSEIELFQLTHSNEKNGWVNEAKEKYDEMVELKTTSSQEGSEPLLERKI 209

Query: 86  LERAL 91
            +R L
Sbjct: 210 CDRVL 214

[Close]

BLAST of Spg017987 vs. ExPASy TrEMBL
Match: A0A5D3C2Z5 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001300 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.1e-13
Identity = 40/65 (61.54%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 26  HKQKKKEEGKELTEIELFELTHRSEKNGWVDEAKKKHDEMVTLKTASSQDGGVTLQDKEI 85
           H   +KEEGKE++EIELF+LTH +EKNGWV+EAK+K+DEMV LKT SSQ+G   L +++I
Sbjct: 167 HSPIEKEEGKEVSEIELFQLTHSNEKNGWVNEAKEKYDEMVELKTTSSQEGSEPLLERKI 226

Query: 86  LERAL 91
            +R L
Sbjct: 227 CDRVL 231

The following BLAST results are available for this feature:

BLAST of Spg017987 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651942.1	1.8e-22	66.67	hypothetical protein Csa_006405 [Cucumis sativus]	[more]
TYK21104.1	4.4e-13	63.08	formin-like protein 4 isoform X2 [Cucumis melo var. makuwa]	[more]
KAA0036187.1	4.4e-13	63.08	uncharacterized protein E6C27_scaffold69G00560 [Cucumis melo var. makuwa]	[more]
TYK04806.1	1.3e-12	61.54	formin-like protein 4 isoform X2 [Cucumis melo var. makuwa]	[more]
KAA0060322.1	1.3e-12	61.54	formin-like protein 4 isoform X2 [Cucumis melo var. makuwa] >TYK22072.1 formin-l...	[more]

BLAST of Spg017987 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg017987 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DBZ5	2.1e-13	63.08	Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7T3L6	2.1e-13	63.08	DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UWU9	6.1e-13	61.54	Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7TVR8	6.1e-13	61.54	Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3C2Z5	6.1e-13	61.54	Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of Spg017987 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004252	Probable transposase, Ptta/En/Spm, plant	PFAM	PF03004	Transposase_24	coord: 5..67 e-value: 8.4E-10 score: 38.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg017987.1	Spg017987.1	mRNA