Spg017965 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg017965
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold9: 30108589 .. 30109568 (-)
RNA-Seq ExpressionSpg017965
SyntenySpg017965
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGATTCTTTCGTTTTGGAAGTTGCTGCTGAGGCAGCTTCCAGCACTCTGTTCATCTTCTGCTGCTTCAATTTGATCATACTCATCATTCTCTTCACCTCAAGCCCAGTCTTTTCCAGCTTTCATCACCAAAATGGTGACGATTTTGATATGCCACTTTCAATTGCCATTCACAGCAACACACATACACAACAGAACTTCATGCTTCAGAAAAATGCCACAGTTGATGAACCAGAACCAGACAGATGTATGAATTTCAACTGCAGTGATAATGTTGAAGATGATGATCATGAGGAGGATGAGGAGGATTTCAGAAGAAGAGTGGAAGAGTTTATTGAAAAGGTTAATAGGGGGTGGAGACAAGAAAGACAGAGGACCTCGAGATCAGTCAAGTAGTTGGGGCATTGATAATCAGTTCCTGAGAATCAGTTCATCGACTCGTACCAATTGAATCGAATTCCATCTGTCTTCAGTTCAATCAATTTGATTCAATTTTTGTTCCAACATCCTCCCTCCTCCTAGCCAAACAAGAATCTCCATCACTTCTACCTGAGGGTTGAGTTCTGTCTCTCTCTCTTTTGAAATCAGAATTTTAAAGATAATTCAATCAGAACAATTTCGCAAAGATGTAATACTCTAGTGTTTGATTCAAGGACGTGAATGAAACTGGAATCTTTTTTTTTTTCCATCTAACTTTATGATTTCATAAGAAGACAAATCAAATTGCTAATATTGAAACAAAGCGTTAATAATCAATCCAAATTGTCCTTTCAACCAATAAGACTTCTTTTCATTTAAACATCCATTCATCACATATTATGCTACATAAACAGGGATTTTTACTGGTTGCAATTTTGTTTCCTGGGGGTGCCAAACGACATCGAATTCATTATTTCCAAATAAGAACACTTCAGGGCAGGGATTCTAATCCTTTTGCAGATCTTAGTAGTTATGATGATCTAAATCTACAATGGTGA

mRNA sequence

ATGGCTGATTCTTTCGTTTTGGAAGTTGCTGCTGAGGCAGCTTCCAGCACTCTGTTCATCTTCTGCTGCTTCAATTTGATCATACTCATCATTCTCTTCACCTCAAGCCCAGTCTTTTCCAGCTTTCATCACCAAAATGGTGACGATTTTGATATGCCACTTTCAATTGCCATTCACAGCAACACACATACACAACAGAACTTCATGCTTCAGAAAAATGCCACAGTTGATGAACCAGAACCAGACAGATGTATGAATTTCAACTGCAGTGATAATGTTGAAGATGATGATCATGAGGAGGATGAGGAGGATTTCAGAAGAAGAGTGGAAGAGTTTATTGAAAAGGGATTTTTACTGGTTGCAATTTTGTTTCCTGGGGGTGCCAAACGACATCGAATTCATTATTTCCAAATAAGAACACTTCAGGGCAGGGATTCTAATCCTTTTGCAGATCTTAGTAGTTATGATGATCTAAATCTACAATGGTGA

Coding sequence (CDS)

ATGGCTGATTCTTTCGTTTTGGAAGTTGCTGCTGAGGCAGCTTCCAGCACTCTGTTCATCTTCTGCTGCTTCAATTTGATCATACTCATCATTCTCTTCACCTCAAGCCCAGTCTTTTCCAGCTTTCATCACCAAAATGGTGACGATTTTGATATGCCACTTTCAATTGCCATTCACAGCAACACACATACACAACAGAACTTCATGCTTCAGAAAAATGCCACAGTTGATGAACCAGAACCAGACAGATGTATGAATTTCAACTGCAGTGATAATGTTGAAGATGATGATCATGAGGAGGATGAGGAGGATTTCAGAAGAAGAGTGGAAGAGTTTATTGAAAAGGGATTTTTACTGGTTGCAATTTTGTTTCCTGGGGGTGCCAAACGACATCGAATTCATTATTTCCAAATAAGAACACTTCAGGGCAGGGATTCTAATCCTTTTGCAGATCTTAGTAGTTATGATGATCTAAATCTACAATGGTGA

Protein sequence

MADSFVLEVAAEAASSTLFIFCCFNLIILIILFTSSPVFSSFHHQNGDDFDMPLSIAIHSNTHTQQNFMLQKNATVDEPEPDRCMNFNCSDNVEDDDHEEDEEDFRRRVEEFIEKGFLLVAILFPGGAKRHRIHYFQIRTLQGRDSNPFADLSSYDDLNLQW
Homology
[Close]
BLAST of Spg017965 vs. NCBI nr
Match: KAG6605668.1 (hypothetical protein SDJN03_02985, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.9 bits (315), Expect = 3.1e-25
Identity = 83/127 (65.35%), Postives = 91/127 (71.65%), Query Frame = 0 

Query: 1   MADSFVLEVAAEAASSTLFIFCCFNLIILIILFTSSPVFSSFHHQNGDDFDMPLSIAIHS 60
           MADS +LE+AAEAASSTLFIFC FNLI+LIILFTS PV SS  HQN D  D+PLSI IHS
Sbjct: 1   MADS-ILELAAEAASSTLFIFCIFNLILLIILFTSRPVSSSSDHQNHD--DVPLSIVIHS 60

Query: 61  NTHTQQNFMLQKNATVDE-------PEPDRCMNFNCS-----DNVEDDDHEEDEEDFRRR 116
           NT+ QQNFMLQKNA VD         EPD   +   S     D  ED+D  EDEEDF+RR
Sbjct: 61  NTNAQQNFMLQKNAIVDVCAVTETLNEPDFSDSVEGSGDDHEDEDEDEDEVEDEEDFKRR 120

[Close]
BLAST of Spg017965 vs. NCBI nr
Match: XP_031742158.1 (probable ATP-dependent RNA helicase ddx52 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-23
Identity = 80/132 (60.61%), Postives = 95/132 (71.97%), Query Frame = 0 

Query: 1   MADSFVLEVAAEAASSTLFIFCCFNLIILIILFTSSPVFSSFHHQNGDDFDMPLSIAIHS 60
           MADS +LE+AA+A SSTLFIFC FNLIIL+I FTS P  SSF  QN DD DMPLSI IHS
Sbjct: 1   MADS-ILELAADATSSTLFIFCFFNLIILVIFFTSRPATSSFDQQN-DDNDMPLSIVIHS 60

Query: 61  NTH-TQQNFMLQKNATV-------DEPEPDRCMNFNCSDNVE--DDDHE-------EDEE 116
            T+ T+QN MLQK+  V        + E +RC+NFNC+ +VE  DDD+E       EDE+
Sbjct: 61  KTNTTEQNSMLQKDPIVGVCEVIESQNETERCVNFNCNVDVEQSDDDNEDDYEDEDEDED 120

[Close]
BLAST of Spg017965 vs. ExPASy TrEMBL
Match: K7N4U7 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_20G212300 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.4e-04
Identity = 48/128 (37.50%), Postives = 63/128 (49.22%), Query Frame = 0 

Query: 1   MADSFVLEVAAEAASSTLFIFCCFNLIILIILFTSSPVFSSFHHQNGDDFDMPLSIAI-- 60
           M DS V+E   +AASS  FIFC  NLII+IIL    P  S           MP +I I  
Sbjct: 1   MLDS-VIEYITQAASSYAFIFCFCNLIIVIILVDLKPKLSFDQESEEIPLSMPTNIGIQE 60

Query: 61  -------HSNTHTQQNFMLQKNA----TVDEPEPDRCMNFNCSDNVEDDDHEEDEEDFRR 116
                  + NT + Q   + ++A     VD+ E +   N NC+   EDDD      + +R
Sbjct: 61  ANSKSLANKNTFSPQAIEVSQHAKEEVVVDKVENEGSDNCNCNSTEEDDD------ELKR 120

[Close]
BLAST of Spg017965 vs. ExPASy TrEMBL
Match: A0A445F8B4 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_054771 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.4e-04
Identity = 48/128 (37.50%), Postives = 63/128 (49.22%), Query Frame = 0 

Query: 1   MADSFVLEVAAEAASSTLFIFCCFNLIILIILFTSSPVFSSFHHQNGDDFDMPLSIAI-- 60
           M DS V+E   +AASS  FIFC  NLII+IIL    P  S           MP +I I  
Sbjct: 1   MLDS-VIEYITQAASSYAFIFCFCNLIIVIILVDLKPKLSFDQESEEIPLSMPTNIGIQE 60

Query: 61  -------HSNTHTQQNFMLQKNA----TVDEPEPDRCMNFNCSDNVEDDDHEEDEEDFRR 116
                  + NT + Q   + ++A     VD+ E +   N NC+   EDDD      + +R
Sbjct: 61  ANSKSLANKNTFSPQAIEVSQHAKEEVVVDKVENEGSDNCNCNSTEEDDD------ELKR 120

The following BLAST results are available for this feature:
BLAST of Spg017965 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6605668.13.1e-2565.35hypothetical protein SDJN03_02985, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_031742158.11.3e-2360.61probable ATP-dependent RNA helicase ddx52 [Cucumis sativus][more]
BLAST of Spg017965 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg017965 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
K7N4U79.4e-0437.50Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_20G212300 PE=4 SV=1[more]
A0A445F8B49.4e-0437.50Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_054771 PE=4 SV=1[more]
BLAST of Spg017965 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg017965.1Spg017965.1mRNA