Spg017472 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg017472
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA ligase
Location	scaffold4: 40765691 .. 40767730 (-)
RNA-Seq Expression	Spg017472
Synteny	Spg017472

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAAATTGGAGTTATTTCAAATAAATTCTTAAAAAAGAAAAAAAAAAAACTCGTTTTTAATAATAACGAGAGAGAGAGAGGGAGGGGAAAAAAAAAAAGAAATAGCAGTGCAATTCTTCCTGGGCAAGCCACGCAAATGATTCAGGGAGGAGTATACCAATGCGGTTCATGTTCATCCATGGACCGTCTTGACTTCTCACTTCCGACCGACGAATTCCAACTTCCATCACTCGGAACAATCTCAAACCTCGAAGCCGACGATCTTCTTCTCTGGCCATGACGGAACTGATCAAGTTCAGCGTGCTTTCGAGTCTGTTTGATTGGATTCAGCGGAGCAAGCCTTCCGCCAAGAAGCGTTCCAAGTTCCGCAAGTTTCTCGACACCTTCTGCAGCTCTTCCGACTATTTTTCTGCCATCCGCTTGATTCTGCCTAGCCTCGATCGAGAGCGCGGCACCTATGGCCTCAAGGAGTCTGTTCTCGCCACTTGCCTTATTGACGCTCTTGGCATGTCTAGAGAGTCTGATGACGCTCTTCGTCTTATCAACTGGCGCAAAGGTGGTGCTAAGACTGGTGCTAATGCCGGTAATTTCGCTCTTGTTGCGGCTGAGGTGAGCCTTGTTTTTTCTTTCATTTCCAATAGTCAATTTGTTGGCGAATTCGTGTGCTTTAGGTGTATATATTCGAGTTATTAATGAATTCCTTCATTTCGGCTTTTGTTCACTTTGAAACTTCGGCATTTATTGTAGGCAGAGTTCCTATTTGTTTATTTTTTTTTAGAAAGGAAAGGGCGAATTGAAGATTCTAAACCACGATAGATGCTTTTAAATCAACCGGCTTTTGCCACTTGAGATCAAGCAACACTTTTAATTGATGAGTTGATAAGTTACAATCAAGACTCCATAACATTCCTGTTAGGAGCTTATATAAAACTGAAGTACTCTAACGTGTTAATTACACGAGCACAAAATATACGGTCCCAAACTCTTCAAGAGGCCTGGACTCTCCCTCCTAGCATGAACTTTAGGCAAAAAAGGAACAACTAGCCGAATGCCCCTCAAAGGAACAACCTGTACAAAATATACCCTCCCCTAACAGACTACTATCATGTCCGATCTAATACAAATTGGTGAAATATCTCTATTAGATTTCTAGCACACCCTGTTTTCTTATATTTTGTAGTCTACTCATATCATCCTTTCCATAAACGCTAGCCACCATGCTATGCGGCAATGGGTTTTTTTTGAACTCCATATGAAAATCTCCTCCACAATTTGTCAATAAGCCCGATTCTTTTTGACTTTCAGTACCCGAACCTCTACATTCGTAGGGTCTTGGAAATTGTATGCCAACAAGCCAACGCCAAAGCAAGTTAAATGCCAATAATGCACTGCATATAACTTTTCTACTACTTCCACTACATTTTCTGAAGGAATGCCTACAACTTTTGATTCATGGAGGGAGGTTTACTTTGAGTCTTAAATTTTGTTTGAAAATGTGGATACTTTAGATTAGATCATTTGGTCACTTTTGAATTGAGTGTTCCTCTAATCTATTTCCCGATGGTCTCAACACTAGTGATAATGTTCAAAGTAAAGGCGATAATAGACCACCTTGTCTCAAGCCTCCAAGTCTCTGTCTTTCTTCTAAGTTTTCCATCAATAATTATATAAAGATTAATTGGTACGAAACCAATTCTCTATCTGTCACCAAAACCCTTATTTTTTAGGATAGCATCTAGGAGGTCTCAATCTATGCGAACATAACCTTTTTCAAGGTCTAGCTTGAAGATAGACTACTTCATTTTATTCTAGTCCTCAACCAAATTGGCAGCTGGAATGGTTCAATGATTCCCTTTTTCTCTGTAAAAGCTGCTTGAAACTCAAAGATAGTAGTAGAAAGTGTATGTTATCCCATGAATAGTTTGTAAGAGCAACTTCAAGACAATTGGGCATCTATTTCTCTTTTGACAATTCTTGGGAAGGTTGTTGAATCATATCCACATCGACTTCCAACTTCGTCTTCCCCTTGGCTTGATTAA

mRNA sequence

ATGACGGAACTGATCAAGTTCAGCGTGCTTTCGAGTCTGTTTGATTGGATTCAGCGGAGCAAGCCTTCCGCCAAGAAGCGTTCCAAGTTCCGCAAGTTTCTCGACACCTTCTGCAGCTCTTCCGACTATTTTTCTGCCATCCGCTTGATTCTGCCTAGCCTCGATCGAGAGCGCGGCACCTATGGCCTCAAGGAGTCTGTTCTCGCCACTTGCCTTATTGACGCTCTTGGCATGTCTAGAGAGTCTGATGACGCTCTTCGTCTTATCAACTGGCGCAAAGGTGGTGCTAAGACTGGTGCTAATGCCGGTAATTTCGCTCTTGTTGCGGCTGAGGTTGTTGAATCATATCCACATCGACTTCCAACTTCGTCTTCCCCTTGGCTTGATTAA

Coding sequence (CDS)

ATGACGGAACTGATCAAGTTCAGCGTGCTTTCGAGTCTGTTTGATTGGATTCAGCGGAGCAAGCCTTCCGCCAAGAAGCGTTCCAAGTTCCGCAAGTTTCTCGACACCTTCTGCAGCTCTTCCGACTATTTTTCTGCCATCCGCTTGATTCTGCCTAGCCTCGATCGAGAGCGCGGCACCTATGGCCTCAAGGAGTCTGTTCTCGCCACTTGCCTTATTGACGCTCTTGGCATGTCTAGAGAGTCTGATGACGCTCTTCGTCTTATCAACTGGCGCAAAGGTGGTGCTAAGACTGGTGCTAATGCCGGTAATTTCGCTCTTGTTGCGGCTGAGGTTGTTGAATCATATCCACATCGACTTCCAACTTCGTCTTCCCCTTGGCTTGATTAA

Protein sequence

MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGANAGNFALVAAEVVESYPHRLPTSSSPWLD

Homology

[Close]

BLAST of Spg017472 vs. NCBI nr
Match: KAG7029849.1 (DNA ligase 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 212.6 bits (540), Expect = 2.0e-51
Identity = 106/114 (92.98%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGT 60
           MTELIKFSVLSSLFDWIQRSK SAKKRSKFRKF+DTFCS +DYFSAIRLILPSLDRERGT
Sbjct: 1   MTELIKFSVLSSLFDWIQRSKSSAKKRSKFRKFIDTFCSPADYFSAIRLILPSLDRERGT 60

Query: 61  YGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGANAGNFALVAAEVVE 115
           YGLKESVLATCLIDALGMSRES+DALRLINWRKGGAKTGAN GNFALVAAEV++
Sbjct: 61  YGLKESVLATCLIDALGMSRESEDALRLINWRKGGAKTGANVGNFALVAAEVLQ 114

[Close]

BLAST of Spg017472 vs. NCBI nr
Match: XP_022929706.1 (DNA ligase 4 [Cucurbita moschata] >XP_022929708.1 DNA ligase 4 [Cucurbita moschata])

HSP 1 Score: 212.6 bits (540), Expect = 2.0e-51
Identity = 106/114 (92.98%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGT 60
           MTELIKFSVLSSLFDWIQRSK SAKKRSKFRKF+DTFCS +DYFSAIRLILPSLDRERGT
Sbjct: 1   MTELIKFSVLSSLFDWIQRSKSSAKKRSKFRKFIDTFCSPADYFSAIRLILPSLDRERGT 60

Query: 61  YGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGANAGNFALVAAEVVE 115
           YGLKESVLATCLIDALGMSRES+DALRLINWRKGGAKTGAN GNFALVAAEV++
Sbjct: 61  YGLKESVLATCLIDALGMSRESEDALRLINWRKGGAKTGANVGNFALVAAEVLQ 114

[Close]

BLAST of Spg017472 vs. NCBI nr
Match: KAG6598897.1 (DNA ligase 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 212.6 bits (540), Expect = 2.0e-51
Identity = 106/114 (92.98%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGT 60
           MTELIKFSVLSSLFDWIQRSK SAKKRSKFRKF+DTFCS +DYFSAIRLILPSLDRERGT
Sbjct: 1   MTELIKFSVLSSLFDWIQRSKSSAKKRSKFRKFIDTFCSPADYFSAIRLILPSLDRERGT 60

Query: 61  YGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGANAGNFALVAAEVVE 115
           YGLKESVLATCLIDALGMSRES+DALRLINWRKGGAKTGAN GNFALVAAEV++
Sbjct: 61  YGLKESVLATCLIDALGMSRESEDALRLINWRKGGAKTGANVGNFALVAAEVLQ 114

[Close]

BLAST of Spg017472 vs. NCBI nr
Match: XP_023546649.1 (DNA ligase 4 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 212.6 bits (540), Expect = 2.0e-51
Identity = 106/114 (92.98%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGT 60
           MTELIKFSVLSSLFDWIQRSK SAKKRSKFRKF+DTFCS +DYFSAIRLILPSLDRERGT
Sbjct: 1   MTELIKFSVLSSLFDWIQRSKSSAKKRSKFRKFIDTFCSPADYFSAIRLILPSLDRERGT 60

Query: 61  YGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGANAGNFALVAAEVVE 115
           YGLKESVLATCLIDALGMSRES+DALRLINWRKGGAKTGAN GNFALVAAEV++
Sbjct: 61  YGLKESVLATCLIDALGMSRESEDALRLINWRKGGAKTGANVGNFALVAAEVLQ 114

[Close]

BLAST of Spg017472 vs. NCBI nr
Match: XP_022996609.1 (DNA ligase 4 [Cucurbita maxima])

HSP 1 Score: 212.6 bits (540), Expect = 2.0e-51
Identity = 106/114 (92.98%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGT 60
           MTELIKFSVLSSLFDWIQRSK SAKKRSKFRKF+DTFCS +DYFSAIRLILPSLDRERGT
Sbjct: 1   MTELIKFSVLSSLFDWIQRSKSSAKKRSKFRKFIDTFCSPADYFSAIRLILPSLDRERGT 60

Query: 61  YGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGANAGNFALVAAEVVE 115
           YGLKESVLATCLIDALGMSRES+DALRLINWRKGGAKTGAN GNFALVAAEV++
Sbjct: 61  YGLKESVLATCLIDALGMSRESEDALRLINWRKGGAKTGANVGNFALVAAEVLQ 114

[Close]

BLAST of Spg017472 vs. ExPASy Swiss-Prot
Match: Q9LL84 (DNA ligase 4 OS=Arabidopsis thaliana OX=3702 GN=LIG4 PE=1 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.9e-45
Identity = 89/115 (77.39%), Postives = 106/115 (92.17%), Query Frame = 0


Query: 1   MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGT 60
           MTE IKFSVL SLF+WIQ+SK S++KRSKFRKFLDT+C  SDYF A+RLI+PSLDRERG+
Sbjct: 1   MTEEIKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCKPSDYFVAVRLIIPSLDRERGS 60

Query: 61  YGLKESVLATCLIDALGMSRESDDALRLINWRKGG-AKTGANAGNFALVAAEVVE 115
           YGLKESVLATCLIDALG+SR++ DA+RL+NWRKGG AK GANAGNF+L+AAEV++
Sbjct: 61  YGLKESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQ 115

[Close]

BLAST of Spg017472 vs. ExPASy Swiss-Prot
Match: Q7X7E9 (Putative DNA ligase 4 OS=Oryza sativa subsp. japonica OX=39947 GN=LIG4 PE=2 SV=2)

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-26
Identity = 61/117 (52.14%), Postives = 85/117 (72.65%), Query Frame = 0


Query: 1   MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFC---SSSDYFSAIRLILPSLDRE 60
           M   ++F +L ++F  + R + +AKKR++ R  LD         DYFSA+RL+LP LDRE
Sbjct: 1   MAATVRFGLLVAMFQAMSRDRTAAKKRARLRALLDRAYGPGGRDDYFSALRLVLPGLDRE 60

Query: 61  RGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGANAGNFALVAAEVVE 115
           RG+YGLKE+ LA+ L+DALG++++S DA+RL NWR+GG     NAGNFALVAAEV++
Sbjct: 61  RGSYGLKEAALASVLVDALGIAKDSPDAVRLTNWRRGGG--FRNAGNFALVAAEVLQ 115

[Close]

BLAST of Spg017472 vs. ExPASy Swiss-Prot
Match: P49917 (DNA ligase 4 OS=Homo sapiens OX=9606 GN=LIG4 PE=1 SV=2)

HSP 1 Score: 79.0 bits (193), Expect = 4.5e-14
Identity = 47/122 (38.52%), Postives = 74/122 (60.66%), Query Frame = 0


Query: 5   IKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSD------------YFSAIRLILP 64
           + F+ L S  + IQ+SK  A+K   FR+FLD++    D            ++ A+RLILP
Sbjct: 14  VPFADLCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRLILP 73

Query: 65  SLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGANAGNFALVAAEV 115
            L+RER  YG+KE++LA   I+ L + R+  DAL+L+N+R     T  +AG+FA++A  V
Sbjct: 74  QLERERMAYGIKETMLAKLYIELLNLPRDGKDALKLLNYRT-PTGTHGDAGDFAMIAYFV 133

[Close]

BLAST of Spg017472 vs. ExPASy Swiss-Prot
Match: Q5R6L3 (DNA ligase 4 OS=Pongo abelii OX=9601 GN=DNL4 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.5e-14
Identity = 47/122 (38.52%), Postives = 74/122 (60.66%), Query Frame = 0


Query: 5   IKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSD------------YFSAIRLILP 64
           + F+ L S  + IQ+SK  A+K   FR+FLD++    D            ++ A+RLILP
Sbjct: 14  VPFADLCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDAFHKNQKDVTDSFYPAMRLILP 73

Query: 65  SLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGANAGNFALVAAEV 115
            L+RER  YG+KE++LA   I+ L + R+  DAL+L+N+R     T  +AG+FA++A  V
Sbjct: 74  QLERERMAYGIKETMLAKLYIELLNLPRDGKDALKLLNYRT-PTGTHGDAGDFAMIAYFV 133

[Close]

BLAST of Spg017472 vs. ExPASy Swiss-Prot
Match: Q8BTF7 (DNA ligase 4 OS=Mus musculus OX=10090 GN=Lig4 PE=2 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-13
Identity = 47/123 (38.21%), Postives = 75/123 (60.98%), Query Frame = 0


Query: 5   IKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSD------------YFSAIRLILP 64
           + F+ L S  + IQ+ K  A+K   F++FLD++    D            ++ A+RLILP
Sbjct: 14  VPFADLCSTLERIQKGKDRAEKIRHFKEFLDSWRKFHDALHKNRKDVTDSFYPAMRLILP 73

Query: 65  SLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWR-KGGAKTGANAGNFALVAAE 115
            L+RER  YG+KE++LA   I+ L + RE  DA +L+N+R   GA+T  +AG+FA++A  
Sbjct: 74  QLERERMAYGIKETMLAKLYIELLNLPREGKDAQKLLNYRTPSGART--DAGDFAMIAYF 133

[Close]

BLAST of Spg017472 vs. ExPASy TrEMBL
Match: A0A6J1ENX2 (DNA ligase OS=Cucurbita moschata OX=3662 GN=LOC111436208 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 9.6e-52
Identity = 106/114 (92.98%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGT 60
           MTELIKFSVLSSLFDWIQRSK SAKKRSKFRKF+DTFCS +DYFSAIRLILPSLDRERGT
Sbjct: 1   MTELIKFSVLSSLFDWIQRSKSSAKKRSKFRKFIDTFCSPADYFSAIRLILPSLDRERGT 60

Query: 61  YGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGANAGNFALVAAEVVE 115
           YGLKESVLATCLIDALGMSRES+DALRLINWRKGGAKTGAN GNFALVAAEV++
Sbjct: 61  YGLKESVLATCLIDALGMSRESEDALRLINWRKGGAKTGANVGNFALVAAEVLQ 114

[Close]

BLAST of Spg017472 vs. ExPASy TrEMBL
Match: A0A6J1K974 (DNA ligase OS=Cucurbita maxima OX=3661 GN=LOC111491798 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 9.6e-52
Identity = 106/114 (92.98%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGT 60
           MTELIKFSVLSSLFDWIQRSK SAKKRSKFRKF+DTFCS +DYFSAIRLILPSLDRERGT
Sbjct: 1   MTELIKFSVLSSLFDWIQRSKSSAKKRSKFRKFIDTFCSPADYFSAIRLILPSLDRERGT 60

Query: 61  YGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGANAGNFALVAAEVVE 115
           YGLKESVLATCLIDALGMSRES+DALRLINWRKGGAKTGAN GNFALVAAEV++
Sbjct: 61  YGLKESVLATCLIDALGMSRESEDALRLINWRKGGAKTGANVGNFALVAAEVLQ 114

[Close]

BLAST of Spg017472 vs. ExPASy TrEMBL
Match: A0A5D3BTU0 (DNA ligase 4 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001900 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.8e-50
Identity = 105/114 (92.11%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGT 60
           M+E IKF+VLSSLFDWIQRSK SAKKRSKFRKFLDTFCS S YFSAIRLILPSLDRERGT
Sbjct: 1   MSEPIKFAVLSSLFDWIQRSKSSAKKRSKFRKFLDTFCSPSHYFSAIRLILPSLDRERGT 60

Query: 61  YGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGANAGNFALVAAEVVE 115
           YGLKESVLATCLIDALGMSR+SDDALRLINWRKGGAKTGANAGNFALVAAEV++
Sbjct: 61  YGLKESVLATCLIDALGMSRDSDDALRLINWRKGGAKTGANAGNFALVAAEVLQ 114

[Close]

BLAST of Spg017472 vs. ExPASy TrEMBL
Match: A0A1S3BQX9 (DNA ligase OS=Cucumis melo OX=3656 GN=LOC103492544 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.8e-50
Identity = 105/114 (92.11%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGT 60
           M+E IKF+VLSSLFDWIQRSK SAKKRSKFRKFLDTFCS S YFSAIRLILPSLDRERGT
Sbjct: 1   MSEPIKFAVLSSLFDWIQRSKSSAKKRSKFRKFLDTFCSPSHYFSAIRLILPSLDRERGT 60

Query: 61  YGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGANAGNFALVAAEVVE 115
           YGLKESVLATCLIDALGMSR+SDDALRLINWRKGGAKTGANAGNFALVAAEV++
Sbjct: 61  YGLKESVLATCLIDALGMSRDSDDALRLINWRKGGAKTGANAGNFALVAAEVLQ 114

[Close]

BLAST of Spg017472 vs. ExPASy TrEMBL
Match: A0A1S3BRM3 (DNA ligase OS=Cucumis melo OX=3656 GN=LOC103492544 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.8e-50
Identity = 105/114 (92.11%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGT 60
           M+E IKF+VLSSLFDWIQRSK SAKKRSKFRKFLDTFCS S YFSAIRLILPSLDRERGT
Sbjct: 1   MSEPIKFAVLSSLFDWIQRSKSSAKKRSKFRKFLDTFCSPSHYFSAIRLILPSLDRERGT 60

Query: 61  YGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGANAGNFALVAAEVVE 115
           YGLKESVLATCLIDALGMSR+SDDALRLINWRKGGAKTGANAGNFALVAAEV++
Sbjct: 61  YGLKESVLATCLIDALGMSRDSDDALRLINWRKGGAKTGANAGNFALVAAEVLQ 114

[Close]

BLAST of Spg017472 vs. TAIR 10
Match: AT5G57160.1 (DNA ligase IV )

HSP 1 Score: 182.6 bits (462), Expect = 2.1e-46
Identity = 89/115 (77.39%), Postives = 106/115 (92.17%), Query Frame = 0


Query: 1   MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGT 60
           MTE IKFSVL SLF+WIQ+SK S++KRSKFRKFLDT+C  SDYF A+RLI+PSLDRERG+
Sbjct: 1   MTEEIKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCKPSDYFVAVRLIIPSLDRERGS 60

Query: 61  YGLKESVLATCLIDALGMSRESDDALRLINWRKGG-AKTGANAGNFALVAAEVVE 115
           YGLKESVLATCLIDALG+SR++ DA+RL+NWRKGG AK GANAGNF+L+AAEV++
Sbjct: 61  YGLKESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQ 115

The following BLAST results are available for this feature:

BLAST of Spg017472 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029849.1	2.0e-51	92.98	DNA ligase 4 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022929706.1	2.0e-51	92.98	DNA ligase 4 [Cucurbita moschata] >XP_022929708.1 DNA ligase 4 [Cucurbita moscha...	[more]
KAG6598897.1	2.0e-51	92.98	DNA ligase 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023546649.1	2.0e-51	92.98	DNA ligase 4 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022996609.1	2.0e-51	92.98	DNA ligase 4 [Cucurbita maxima]	[more]

BLAST of Spg017472 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LL84	2.9e-45	77.39	DNA ligase 4 OS=Arabidopsis thaliana OX=3702 GN=LIG4 PE=1 SV=1	[more]
Q7X7E9	1.3e-26	52.14	Putative DNA ligase 4 OS=Oryza sativa subsp. japonica OX=39947 GN=LIG4 PE=2 SV=2	[more]
P49917	4.5e-14	38.52	DNA ligase 4 OS=Homo sapiens OX=9606 GN=LIG4 PE=1 SV=2	[more]
Q5R6L3	4.5e-14	38.52	DNA ligase 4 OS=Pongo abelii OX=9601 GN=DNL4 PE=2 SV=1	[more]
Q8BTF7	1.3e-13	38.21	DNA ligase 4 OS=Mus musculus OX=10090 GN=Lig4 PE=2 SV=2	[more]

BLAST of Spg017472 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ENX2	9.6e-52	92.98	DNA ligase OS=Cucurbita moschata OX=3662 GN=LOC111436208 PE=3 SV=1	[more]
A0A6J1K974	9.6e-52	92.98	DNA ligase OS=Cucurbita maxima OX=3661 GN=LOC111491798 PE=3 SV=1	[more]
A0A5D3BTU0	1.8e-50	92.11	DNA ligase 4 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BQX9	1.8e-50	92.11	DNA ligase OS=Cucumis melo OX=3656 GN=LOC103492544 PE=3 SV=1	[more]
A0A1S3BRM3	1.8e-50	92.11	DNA ligase OS=Cucumis melo OX=3656 GN=LOC103492544 PE=3 SV=1	[more]

BLAST of Spg017472 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57160.1	2.1e-46	77.39	DNA ligase IV	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012308	DNA ligase, ATP-dependent, N-terminal	PFAM	PF04675	DNA_ligase_A_N	coord: 6..119 e-value: 1.1E-16 score: 61.7
IPR036599	DNA ligase, ATP-dependent, N-terminal domain superfamily	GENE3D	1.10.3260.10		coord: 1..127 e-value: 8.6E-30 score: 106.1
IPR029710	DNA ligase 4	PANTHER	PTHR45997	DNA LIGASE 4	coord: 3..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg017472.1	Spg017472.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0051103	DNA ligation involved in DNA repair
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006260	DNA replication
biological_process	GO:0006303	double-strand break repair via nonhomologous end joining
biological_process	GO:0006297	nucleotide-excision repair, DNA gap filling
biological_process	GO:0010165	response to X-ray
biological_process	GO:0006281	DNA repair
cellular_component	GO:0032807	DNA ligase IV complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003910	DNA ligase (ATP) activity