Spg017468 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg017468
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionhomogentisate phytyltransferase 1, chloroplastic-like
Locationscaffold4: 41431888 .. 41432570 (-)
RNA-Seq ExpressionSpg017468
SyntenySpg017468
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGACCCAAAAGGGAAAGAAAAATAAAATCAATAATTTACAAACGCCTTCCAAGGCCGAAGTGTACTTCACAACTCGCTCTGAAAAATTCGACTGTTCAGAGCTTGGGCGAAGAAGACGAGAGATTGAGCAAAGTTTGCTTCTGCATTCTTCAAAGCTCCGAATCTCCACCATTTACTTTCTCCTTTCCAGAGGAGGAAGCCGTCTCGGTAATGGATTCCGTGTTCGTTAGAGCTTATCGAAGTCATATCACTCTTGCATCAGGTATGCCGTTTTGTTTTCTTCCAATCCGAGTGGTTTGAGACTGTTTCAGTTCAGTTCAATCTTCGATTTCTCCACCGGATGTTTAGCATCTTGTTTTGAGCTTCTTTTTTGCTCTTAGATTGGTGCATTCTGTTTATGGAGTCTGTTTTGATGCTTCGTTTTCATTTCCGCTTGAGGAGAAACATCAATAATGCTCTCGCGGTATTCATCAGATTGCTTGATTGAAGCTGATTCGAGTCTGTTTTGTTTATTTTGCTGGTTCTGTTTGATAGGTGGGATTGGAAACGGCTGGACGAATCGTGACGTCAGTAATGTTTGGCTTCCAAGTACGACCAATTCGTCTTTGAATCTTTATTTTTCTTTGCTTCTATCGCTTTCGCTTTCGCTTCTCGTCTTCTCTGTTATCCTTTAATTCGTC

mRNA sequence

AAAAGACCCAAAAGGGAAAGAAAAATAAAATCAATAATTTACAAACGCCTTCCAAGGCCGAAGTGTACTTCACAACTCGCTCTGAAAAATTCGACTGTTCAGAGCTTGGGCGAAGAAGACGAGAGATTGAGCAAAGTTTGCTTCTGCATTCTTCAAAGCTCCGAATCTCCACCATTTACTTTCTCCTTTCCAGAGGAGGAAGCCGTCTCGGTAATGGATTCCGTGTTCGTTAGAGCTTATCGAAGTCATATCACTCTTGCATCAGGTGGGATTGGAAACGGCTGGACGAATCGTGACGTCAGTAATGTTTGGCTTCCAAGTACGACCAATTCGTCTTTGAATCTTTATTTTTCTTTGCTTCTATCGCTTTCGCTTTCGCTTCTCGTCTTCTCTGTTATCCTTTAA

Coding sequence (CDS)

AAAAGACCCAAAAGGGAAAGAAAAATAAAATCAATAATTTACAAACGCCTTCCAAGGCCGAAGTGTACTTCACAACTCGCTCTGAAAAATTCGACTGTTCAGAGCTTGGGCGAAGAAGACGAGAGATTGAGCAAAGTTTGCTTCTGCATTCTTCAAAGCTCCGAATCTCCACCATTTACTTTCTCCTTTCCAGAGGAGGAAGCCGTCTCGGTAATGGATTCCGTGTTCGTTAGAGCTTATCGAAGTCATATCACTCTTGCATCAGGTGGGATTGGAAACGGCTGGACGAATCGTGACGTCAGTAATGTTTGGCTTCCAAGTACGACCAATTCGTCTTTGAATCTTTATTTTTCTTTGCTTCTATCGCTTTCGCTTTCGCTTCTCGTCTTCTCTGTTATCCTTTAA

Protein sequence

KRPKRERKIKSIIYKRLPRPKCTSQLALKNSTVQSLGEEDERLSKVCFCILQSSESPPFTFSFPEEEAVSVMDSVFVRAYRSHITLASGGIGNGWTNRDVSNVWLPSTTNSSLNLYFSLLLSLSLSLLVFSVIL
Homology
[Close]
BLAST of Spg017468 vs. NCBI nr
Match: KAG7029816.1 (Homogentisate phytyltransferase 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 74.7 bits (182), Expect = 6.7e-10
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 72  MDSVFVRAYRSHITLASGGIGNGWTNRDVSNVWLPSTTNSSLNLYF 118
           MDSVFVRAYRSH+    GGIG+GWTNRDV+NVWLPS TNS LN YF
Sbjct: 1   MDSVFVRAYRSHVV---GGIGSGWTNRDVNNVWLPSKTNSFLNPYF 43

[Close]
BLAST of Spg017468 vs. NCBI nr
Match: XP_038889438.1 (homogentisate phytyltransferase 1, chloroplastic isoform X3 [Benincasa hispida])

HSP 1 Score: 72.4 bits (176), Expect = 3.3e-09
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 72  MDSVFVRAYRSHITLASGGIGNGWTNRDVSNVWLPSTTNSSLNL 116
           MDSVFVRAYRSH TLA+GG+GNGWTNR V+NVWLPS    +L +
Sbjct: 1   MDSVFVRAYRSHFTLAAGGVGNGWTNRGVNNVWLPSPRPGALKI 44

[Close]
BLAST of Spg017468 vs. NCBI nr
Match: KAG6586087.1 (Homogentisate phytyltransferase 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-08
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 72  MDSVFVRAYRSHITLASGGIGNGWTNRDVSNVWLPSTTNSSL 114
           MDSVFVRAYRSHITLA+GGIG+GWTNRDV+NV LPS    +L
Sbjct: 1   MDSVFVRAYRSHITLATGGIGSGWTNRDVNNVSLPSPRPGAL 42

[Close]
BLAST of Spg017468 vs. NCBI nr
Match: XP_023537912.1 (homogentisate phytyltransferase 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-08
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 0 

Query: 72  MDSVFVRAYRSHITLASGGIGNGWTNRDVSNVWLPSTTNSSL 114
           MDSVFVRAYRSHITLA+GGIGNGW NRDV+NV LPS    +L
Sbjct: 1   MDSVFVRAYRSHITLATGGIGNGWMNRDVNNVSLPSPRPGAL 42

[Close]
BLAST of Spg017468 vs. NCBI nr
Match: XP_022153310.1 (homogentisate phytyltransferase 1, chloroplastic isoform X4 [Momordica charantia])

HSP 1 Score: 68.2 bits (165), Expect = 6.3e-08
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 72  MDSVFVRAYRSHITLASGGIGNGWTNRDVSNVWLPSTTNSSLNL 116
           MDSVFVRA+RS+ITLA+GG GNGWTNRD++N WLPS    +L +
Sbjct: 1   MDSVFVRAHRSYITLATGGSGNGWTNRDINNAWLPSLRLGALKI 44

[Close]
BLAST of Spg017468 vs. ExPASy TrEMBL
Match: A0A6J1DII7 (homogentisate phytyltransferase 1, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020832 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.0e-08
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 72  MDSVFVRAYRSHITLASGGIGNGWTNRDVSNVWLPSTTNSSLNL 116
           MDSVFVRA+RS+ITLA+GG GNGWTNRD++N WLPS    +L +
Sbjct: 1   MDSVFVRAHRSYITLATGGSGNGWTNRDINNAWLPSLRLGALKI 44

[Close]
BLAST of Spg017468 vs. ExPASy TrEMBL
Match: A0A6J1DGG3 (homogentisate phytyltransferase 1, chloroplastic isoform X4 OS=Momordica charantia OX=3673 GN=LOC111020832 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.0e-08
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 72  MDSVFVRAYRSHITLASGGIGNGWTNRDVSNVWLPSTTNSSLNL 116
           MDSVFVRA+RS+ITLA+GG GNGWTNRD++N WLPS    +L +
Sbjct: 1   MDSVFVRAHRSYITLATGGSGNGWTNRDINNAWLPSLRLGALKI 44

[Close]
BLAST of Spg017468 vs. ExPASy TrEMBL
Match: A0A6J1DIP5 (homogentisate phytyltransferase 1, chloroplastic isoform X3 OS=Momordica charantia OX=3673 GN=LOC111020832 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.0e-08
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 72  MDSVFVRAYRSHITLASGGIGNGWTNRDVSNVWLPSTTNSSLNL 116
           MDSVFVRA+RS+ITLA+GG GNGWTNRD++N WLPS    +L +
Sbjct: 1   MDSVFVRAHRSYITLATGGSGNGWTNRDINNAWLPSLRLGALKI 44

[Close]
BLAST of Spg017468 vs. ExPASy TrEMBL
Match: A0A6J1DK94 (homogentisate phytyltransferase 1, chloroplastic isoform X5 OS=Momordica charantia OX=3673 GN=LOC111020832 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.0e-08
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 72  MDSVFVRAYRSHITLASGGIGNGWTNRDVSNVWLPSTTNSSLNL 116
           MDSVFVRA+RS+ITLA+GG GNGWTNRD++N WLPS    +L +
Sbjct: 1   MDSVFVRAHRSYITLATGGSGNGWTNRDINNAWLPSLRLGALKI 44

[Close]
BLAST of Spg017468 vs. ExPASy TrEMBL
Match: A0A6J1FDD5 (homogentisate phytyltransferase 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111444351 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-07
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 0 

Query: 72  MDSVFVRAYRSHITLASGGIGNGWTNRDVSNVWLPSTTNSSL 114
           MDSV VRAYRSHITLA+GGIG+GWTNRDV+NV LPS    +L
Sbjct: 1   MDSVSVRAYRSHITLATGGIGSGWTNRDVNNVSLPSPRPGAL 42

The following BLAST results are available for this feature:
BLAST of Spg017468 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7029816.16.7e-1078.26Homogentisate phytyltransferase 1, chloroplastic, partial [Cucurbita argyrosperm... [more]
XP_038889438.13.3e-0972.73homogentisate phytyltransferase 1, chloroplastic isoform X3 [Benincasa hispida][more]
KAG6586087.12.8e-0878.57Homogentisate phytyltransferase 1, chloroplastic, partial [Cucurbita argyrosperm... [more]
XP_023537912.13.7e-0878.57homogentisate phytyltransferase 1, chloroplastic-like [Cucurbita pepo subsp. pep... [more]
XP_022153310.16.3e-0868.18homogentisate phytyltransferase 1, chloroplastic isoform X4 [Momordica charantia... [more]
BLAST of Spg017468 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg017468 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DII73.0e-0868.18homogentisate phytyltransferase 1, chloroplastic isoform X1 OS=Momordica charant... [more]
A0A6J1DGG33.0e-0868.18homogentisate phytyltransferase 1, chloroplastic isoform X4 OS=Momordica charant... [more]
A0A6J1DIP53.0e-0868.18homogentisate phytyltransferase 1, chloroplastic isoform X3 OS=Momordica charant... [more]
A0A6J1DK943.0e-0868.18homogentisate phytyltransferase 1, chloroplastic isoform X5 OS=Momordica charant... [more]
A0A6J1FDD51.2e-0776.19homogentisate phytyltransferase 1, chloroplastic-like OS=Cucurbita moschata OX=3... [more]
BLAST of Spg017468 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg017468.1Spg017468.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004659 prenyltransferase activity