Spg017451 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg017451
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationscaffold4: 40581454 .. 40584300 (+)
RNA-Seq ExpressionSpg017451
SyntenySpg017451
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AACTCTTTAGTGGATGCTAATGGAGACACAACTCCAGATTATATGGGATGGTATCAGAATATTACTAGACGCTTCATCACTCGAAAGGGGGCCTCATATGGTCACGTGGTAAAGTTTTAATCCAAATTGTTAAATCTTATTATTTGATGTTTAAGTTTAATCTTATTTTATTCATTATTTCTTAGAGGTCATGTTTTCAACAAATCCGTGATATAAGTGAAGATCTAGACGTTCTTAATCTGTGCACTAGTGGTGAGGCCAGTATGGAACAACTTCAGCATATGTACCGCATACCTATGCCACCTCCCCTGGGTCCTAGGCGTAGACGACGTGCTCGAGAGGAGGACATTCCAGTTGTGCATGATGAAGTGCACCATAATGTTGAAGATGTACCTCCTCTCACTCAAACACAAGATGGTGGTACTCCTTTCACTCAACTTGTTTTGATCCCAACTCCTGGTATGTAGTATTTTCAAACTCTGATTCCACCATACTATGAGGCTGGTCCATCATCATCACATGAGACAGGTCCCTCATCGTCATATGCTCATAGAGAGCAACCAGAAGAACAAGAGGAACATGAGGTACAAGAGGAGCAAGCGGTACAAGATGAACAAGATTAGGCACCAAGGGGACATCGTCGTCAACCACCTCGTAAACGGTGACGTCCACATTGTGGAACTCATTAGCATTTTTGCATTTTTCTTTTGTTTAGGTGAACTCATTAGCCTTTTATTATGATCATGTGTATTGTTGAACATTTTATTTTATAAACTAAATTTTAATTTTTAATTTATATGTGTCATTAATTTTTTGCAAAATTTTGAAAGAAATTACTTATTCTTTAAAAAGATGAAAATATTAAAGATTTTTTTTTTTAAATATTGTTAGAAAAACTTAATGACATTCAAACTTAATATTGAAGAAAGTGGAACTTTAAAAAAAACTTAATAAATGTATATAAAAAAAAGACAAGATTGTTAAGATATCTTCACATTTTTTACAAGATTATGTCACAATTGTATAAAATATAAAATAAAATAAATGTCTATAAAATAAAGGGAAATTGTGTTGAATAACTACAAATAAAAGGCATCCTTGATTTTTGGCTACGAAAGTTTCGATTTTGCAGGTGTGGCTACCGGTATTTTAGGAACCGTTTCCTTTTTTTTTTTAACGTTTTTACCCCTAGTATATACGGCTATATACAAACGCCGTTAACAGTCTTTTTTGTTGCAAACGTCCCCTTTTTGCGTGGTGGATGGATCCCTACTTACATGAGATCGGTTGGCGGTTTGTTTTGATCCCGATTTACCTATTTTTCAGGCTTAGGCTTTATAACGGTAAAAAAATTATTTTTTTCTCCACATTTTTTCCCATCATATAAATGTCACAGTTTATTATCGTTTTGTTGAATATCACGTTCACATTGTCGTGGGTAATTGCCGTTGTAATTGCCAATGGTTAAAAGGGTAAGAATAAGGTCACACACACAAAAAAGCACACTAACATAGTTCAATCCATACAGACAAGAAGATGCAGGGTTAGCTGGAAACAGTAGATGTATATACTAGTACATACAGATGTATAGAATGTGAGTATTTCCTTTTATACAAACTTGCCAATGTATAGAATGTAAGATTGGGGGGGGGGGGTATTATGGGTGCACACAGCAGCACAAAGGAAATACTCCGAACAACAGATGTACAATACACAGCAACACATTCAGCAGCATGAAGCAGTCAACAGATGGATTACCCCAAAAAAAATACATCAAACAATTCTATAATTGTATGTAACAGTTCAATCTACATAGACAACAGACGTACGATATCATAGATGTATATACTAATACATACACGTTCACAGGCAGACAATGGAGGGTATATAACTGTTCAAACACACGTACATACGAGCATATATGTATATAGATGTACGAGATAGTAGTTGTACATATCAGTATATAAATGTATGAGATCATGGATGTATATACTAATACATACACGTTCACAGGCAGACAATGTACACAGACTTGCCAATACATAGATTGTAAGGTGCAGGGGGGTATATAACTCCTCTCACACACTTTCATATGACCACACCCCAACATACTTTCCAGAGGAGTTTGCAACAATGATGGAATAGTATTTATCAGTACATACCGCTCTGGTGGGTTCGACCTCCTCACTTTCATCCCTTTTTGTCCGTCTGTCCTTTCCTTTGGGTCTCTTCGCATCCTGGATGTTAATTAGGGAGTTTAATTCTCTAATTTGTAATTCACAAGGGGGATGATGTGGGTGATCTTTTTTACCTTTTTGTCTACCGTTTTCTTTTTCTTGCTATCTCCTTCGTCTCCGCTATCGCTTGAGAAGTAATCGTCTTCAATAGAATGGTATTCCCCCGTATCGGCGCTTGCGTCAACTTCTTCCTGTTTTTTAACACAATTACACGAGTAATTACAGCATGTTTTACACAACCTAAAGAGTAAATACAGAGTCTTACCTCCACGGGCTTAGTCTTTTTTGGCCTCTGCTTACAATGGAGCGTAATATTCTTGGATTGCATGGATGAAACGAAATCCCTCAAATCTCGGGGGAATGTATCAGTTTGTTGCTAATATAAGGGAATGGGAATGAAGCTGTTACCTTAGTTTGAATTTCTGAGAAATTGTATAGTCCTCGCACAGAAGGAGAATCGATGGAGGATGTGGGGCGAGCAAGAGTCTCGACGGCGCGACGGAAGAAGGTCGTCGGCACGGCGGATGTGGGTCGTCGGCGCGATGCAAGAGGTAGGGATTGGTATACGCTCTGTGTTGGGGGTGGAAAATGGTGGGAAATGGAGGATTAA

mRNA sequence

AACTCTTTAGTGGATGCTAATGGAGACACAACTCCAGATTATATGGGATGGTATCAGAATATTACTAGACGCTTCATCACTCGAAAGGGGGCCTCATATGGTCACGTGAGGTCATGTTTTCAACAAATCCGTGATATAAGTGAAGATCTAGACGTTCTTAATCTGTGCACTAGTGGTGAGGCCAGTATGGAACAACTTCAGCATATGTACCGCATACCTATGCCACCTCCCCTGGGTCCTAGGCGTAGACGACGTGCTCGAGAGGAGGACATTCCAGTTGTGCATGATGAAGTGCACCATAATGTTGAAGATGTACCTCCTCTCACTCAAACACAAGATGGTGGTACTCCTTTCACTCAACTTGTTTTGATCCCAACTCCTGAGAGCAACCAGAAGAACAAGAGGAACATGAGGTACAAGAGGAGCAAGCGGTACAAGATGAACAAGATTAGGCACCAAGGGGACATCGTCGTCAACCACCTCGTAAACGGTGACGTCCACATTGTGGAACTCATTAGCATTTTTGCATTTTTCTTTTGTTTAGGTGTGGCTACCGAAGGAGAATCGATGGAGGATGTGGGGCGAGCAAGAGTCTCGACGGCGCGACGGAAGAAGGTCGTCGGCACGGCGGATGTGGGTCGTCGGCGCGATGCAAGAGGTAGGGATTGGTATACGCTCTGTGTTGGGGGTGGAAAATGGTGGGAAATGGAGGATTAA

Coding sequence (CDS)

AACTCTTTAGTGGATGCTAATGGAGACACAACTCCAGATTATATGGGATGGTATCAGAATATTACTAGACGCTTCATCACTCGAAAGGGGGCCTCATATGGTCACGTGAGGTCATGTTTTCAACAAATCCGTGATATAAGTGAAGATCTAGACGTTCTTAATCTGTGCACTAGTGGTGAGGCCAGTATGGAACAACTTCAGCATATGTACCGCATACCTATGCCACCTCCCCTGGGTCCTAGGCGTAGACGACGTGCTCGAGAGGAGGACATTCCAGTTGTGCATGATGAAGTGCACCATAATGTTGAAGATGTACCTCCTCTCACTCAAACACAAGATGGTGGTACTCCTTTCACTCAACTTGTTTTGATCCCAACTCCTGAGAGCAACCAGAAGAACAAGAGGAACATGAGGTACAAGAGGAGCAAGCGGTACAAGATGAACAAGATTAGGCACCAAGGGGACATCGTCGTCAACCACCTCGTAAACGGTGACGTCCACATTGTGGAACTCATTAGCATTTTTGCATTTTTCTTTTGTTTAGGTGTGGCTACCGAAGGAGAATCGATGGAGGATGTGGGGCGAGCAAGAGTCTCGACGGCGCGACGGAAGAAGGTCGTCGGCACGGCGGATGTGGGTCGTCGGCGCGATGCAAGAGGTAGGGATTGGTATACGCTCTGTGTTGGGGGTGGAAAATGGTGGGAAATGGAGGATTAA

Protein sequence

NSLVDANGDTTPDYMGWYQNITRRFITRKGASYGHVRSCFQQIRDISEDLDVLNLCTSGEASMEQLQHMYRIPMPPPLGPRRRRRAREEDIPVVHDEVHHNVEDVPPLTQTQDGGTPFTQLVLIPTPESNQKNKRNMRYKRSKRYKMNKIRHQGDIVVNHLVNGDVHIVELISIFAFFFCLGVATEGESMEDVGRARVSTARRKKVVGTADVGRRRDARGRDWYTLCVGGGKWWEMED
Homology
BLAST of Spg017451 vs. NCBI nr
Match: TYK11193.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 3.5e-17
Identity = 53/117 (45.30%), Postives = 77/117 (65.81%), Query Frame = 0

Query: 9   DTTPDYMGWYQNITRRFITRKGASYGHVRSCFQQIRDISED-LDVLNLCTSGEASMEQLQ 68
           D T +Y+ WY NITR +ITR GA+ GH+RS   ++RD+++D   VLN+C + +  ME++ 
Sbjct: 112 DVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLRDVADDPQQVLNICNNNKRYMEEIH 171

Query: 69  HMYRIPMPPPLGPRRRRRAREEDIPVVHDEVHHNVEDVPPLTQTQDG---GTPFTQL 122
           +MY + + PP  P  R R R E+  +  DEV+HNVE+VPP TQTQ     G+P T +
Sbjct: 172 NMYDLSIVPP--PVHRGRVRVEEAEL--DEVYHNVEEVPPTTQTQSQTGYGSPMTMM 224

BLAST of Spg017451 vs. NCBI nr
Match: KAA0038951.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 2.9e-16
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 0

Query: 9   DTTPDYMGWYQNITRRFITRKGASYGHVRSCFQQIRDISED-LDVLNLCTSGEASMEQLQ 68
           D T +Y+ WY NITR +ITR  A+ GH+RS   ++RD+++D   VLN+C + +  ME++ 
Sbjct: 121 DVTQEYIHWYNNITRLYITRPRAAVGHLRSNNARLRDVADDPQQVLNICNNNKRYMEEIH 180

Query: 69  HMYRIPMPPPLGPRRRRRAREEDIPVVHDEVHHNVEDVPPLTQTQDG---GTPFTQL 122
           +MY + + PP  P  R R R E+  +  DEV+HNVE+VPP TQTQ     G+P T +
Sbjct: 181 NMYDLSIVPP--PVHRGRVRVEEAEL--DEVYHNVEEVPPTTQTQSQTGYGSPMTMM 233

BLAST of Spg017451 vs. NCBI nr
Match: TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.9e-15
Identity = 51/117 (43.59%), Postives = 73/117 (62.39%), Query Frame = 0

Query: 9   DTTPDYMGWYQNITRRFITRKGASYGHVRSCFQQIRDISED-LDVLNLCTSGEASMEQLQ 68
           D T +Y+  Y NITR +ITR GA  GH+RS   ++RD+  D   VL++C + E  ME++ 
Sbjct: 289 DVTQEYIHLYNNITRLYITRPGAIVGHLRSNNARLRDVVNDPQQVLDICNNNERYMEKIH 348

Query: 69  HMYRIPMPPPLGPRRRRRAREEDIPVVHDEVHHNVEDVPPLTQTQDG---GTPFTQL 122
           ++Y +P+ PP   R R R  E ++    DEV+HNVE+VPP TQTQ     G+P T +
Sbjct: 349 NIYDLPIVPPPVHRERFRVEEAEL----DEVYHNVEEVPPTTQTQSQTGYGSPMTMM 401

BLAST of Spg017451 vs. NCBI nr
Match: KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 8.0e-14
Identity = 51/129 (39.53%), Postives = 80/129 (62.02%), Query Frame = 0

Query: 2   SLVDANGDTTPDYMGWYQNITRRFITRKGASYGHVRSCFQQIRDISEDL-DVLNLCTSGE 61
           S+   + D T +Y+ WY NITR +ITR GA+ G  RS   ++RD+++DL   L++C + E
Sbjct: 6   SIQQFDKDVTQEYIHWYSNITRLYITRPGAAVG--RSNNARLRDVADDLQQFLDICNNNE 65

Query: 62  ASMEQLQHMYRIPMPPPLGPRRRRRAREEDIPVVHDEVHHNVEDVPPLTQTQDGGTPFTQ 121
             ME++ +MY +P+ PP  P  R   R E+  +  D+V+HNVE+VP  TQTQ      + 
Sbjct: 66  RYMEEIHNMYDLPIVPP--PVHRGCVRVEEAEL--DKVYHNVEEVPSTTQTQSQTGYGSP 125

Query: 122 LVLIPTPES 130
           + ++PT E+
Sbjct: 126 MTMMPTFEA 128

BLAST of Spg017451 vs. NCBI nr
Match: KAA0067080.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 8.8e-13
Identity = 44/119 (36.97%), Postives = 73/119 (61.34%), Query Frame = 0

Query: 9   DTTPDYMGWYQNITRRFITRKGASYGHVRSCFQQIRDISED-LDVLNLCTSGEASMEQLQ 68
           D T +Y+ WY+NI++ +IT+ GA   H+RS   ++R++++D   VLN+C   E  ME + 
Sbjct: 387 DVTQEYINWYKNISKLYITQPGAVMSHLRSNNIRLRNVADDPQQVLNICNDNEQYMENIH 446

Query: 69  HMYRIPMPPPLGPRRRRRAREEDIPVVHDEVHHNVEDVPPLTQTQDGGTPFTQLVLIPT 127
           +MY +P+ P    RRR   +E D     +EV  + E+VPP+TQTQ      + ++++PT
Sbjct: 447 YMYDVPIVPAPVQRRRPLVQEPD---QLEEVDQHGEEVPPMTQTQSEHNYVSPVMMMPT 502

BLAST of Spg017451 vs. ExPASy TrEMBL
Match: A0A5D3CH23 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00320 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-17
Identity = 53/117 (45.30%), Postives = 77/117 (65.81%), Query Frame = 0

Query: 9   DTTPDYMGWYQNITRRFITRKGASYGHVRSCFQQIRDISED-LDVLNLCTSGEASMEQLQ 68
           D T +Y+ WY NITR +ITR GA+ GH+RS   ++RD+++D   VLN+C + +  ME++ 
Sbjct: 112 DVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLRDVADDPQQVLNICNNNKRYMEEIH 171

Query: 69  HMYRIPMPPPLGPRRRRRAREEDIPVVHDEVHHNVEDVPPLTQTQDG---GTPFTQL 122
           +MY + + PP  P  R R R E+  +  DEV+HNVE+VPP TQTQ     G+P T +
Sbjct: 172 NMYDLSIVPP--PVHRGRVRVEEAEL--DEVYHNVEEVPPTTQTQSQTGYGSPMTMM 224

BLAST of Spg017451 vs. ExPASy TrEMBL
Match: A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-16
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 0

Query: 9   DTTPDYMGWYQNITRRFITRKGASYGHVRSCFQQIRDISED-LDVLNLCTSGEASMEQLQ 68
           D T +Y+ WY NITR +ITR  A+ GH+RS   ++RD+++D   VLN+C + +  ME++ 
Sbjct: 121 DVTQEYIHWYNNITRLYITRPRAAVGHLRSNNARLRDVADDPQQVLNICNNNKRYMEEIH 180

Query: 69  HMYRIPMPPPLGPRRRRRAREEDIPVVHDEVHHNVEDVPPLTQTQDG---GTPFTQL 122
           +MY + + PP  P  R R R E+  +  DEV+HNVE+VPP TQTQ     G+P T +
Sbjct: 181 NMYDLSIVPP--PVHRGRVRVEEAEL--DEVYHNVEEVPPTTQTQSQTGYGSPMTMM 233

BLAST of Spg017451 vs. ExPASy TrEMBL
Match: A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.2e-16
Identity = 51/117 (43.59%), Postives = 73/117 (62.39%), Query Frame = 0

Query: 9   DTTPDYMGWYQNITRRFITRKGASYGHVRSCFQQIRDISED-LDVLNLCTSGEASMEQLQ 68
           D T +Y+  Y NITR +ITR GA  GH+RS   ++RD+  D   VL++C + E  ME++ 
Sbjct: 289 DVTQEYIHLYNNITRLYITRPGAIVGHLRSNNARLRDVVNDPQQVLDICNNNERYMEKIH 348

Query: 69  HMYRIPMPPPLGPRRRRRAREEDIPVVHDEVHHNVEDVPPLTQTQDG---GTPFTQL 122
           ++Y +P+ PP   R R R  E ++    DEV+HNVE+VPP TQTQ     G+P T +
Sbjct: 349 NIYDLPIVPPPVHRERFRVEEAEL----DEVYHNVEEVPPTTQTQSQTGYGSPMTMM 401

BLAST of Spg017451 vs. ExPASy TrEMBL
Match: A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.9e-14
Identity = 51/129 (39.53%), Postives = 80/129 (62.02%), Query Frame = 0

Query: 2   SLVDANGDTTPDYMGWYQNITRRFITRKGASYGHVRSCFQQIRDISEDL-DVLNLCTSGE 61
           S+   + D T +Y+ WY NITR +ITR GA+ G  RS   ++RD+++DL   L++C + E
Sbjct: 6   SIQQFDKDVTQEYIHWYSNITRLYITRPGAAVG--RSNNARLRDVADDLQQFLDICNNNE 65

Query: 62  ASMEQLQHMYRIPMPPPLGPRRRRRAREEDIPVVHDEVHHNVEDVPPLTQTQDGGTPFTQ 121
             ME++ +MY +P+ PP  P  R   R E+  +  D+V+HNVE+VP  TQTQ      + 
Sbjct: 66  RYMEEIHNMYDLPIVPP--PVHRGCVRVEEAEL--DKVYHNVEEVPSTTQTQSQTGYGSP 125

Query: 122 LVLIPTPES 130
           + ++PT E+
Sbjct: 126 MTMMPTFEA 128

BLAST of Spg017451 vs. ExPASy TrEMBL
Match: A0A5A7VIP6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001330 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.3e-13
Identity = 44/119 (36.97%), Postives = 73/119 (61.34%), Query Frame = 0

Query: 9   DTTPDYMGWYQNITRRFITRKGASYGHVRSCFQQIRDISED-LDVLNLCTSGEASMEQLQ 68
           D T +Y+ WY+NI++ +IT+ GA   H+RS   ++R++++D   VLN+C   E  ME + 
Sbjct: 387 DVTQEYINWYKNISKLYITQPGAVMSHLRSNNIRLRNVADDPQQVLNICNDNEQYMENIH 446

Query: 69  HMYRIPMPPPLGPRRRRRAREEDIPVVHDEVHHNVEDVPPLTQTQDGGTPFTQLVLIPT 127
           +MY +P+ P    RRR   +E D     +EV  + E+VPP+TQTQ      + ++++PT
Sbjct: 447 YMYDVPIVPAPVQRRRPLVQEPD---QLEEVDQHGEEVPPMTQTQSEHNYVSPVMMMPT 502

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK11193.13.5e-1745.30mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0038951.12.9e-1644.44mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK23842.11.9e-1543.59serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0062642.18.0e-1439.53mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0067080.18.8e-1336.97mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CH231.7e-1745.30Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7TBF81.4e-1644.44Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3DJV79.2e-1643.59Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7V3423.9e-1439.53Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7VIP64.3e-1336.97Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg017451.1Spg017451.1mRNA