Spg017367 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg017367
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionnifU-like protein 3, chloroplastic
Locationscaffold4: 41262652 .. 41264927 (+)
RNA-Seq ExpressionSpg017367
SyntenySpg017367
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGGCGCTCTCTCGACTCGAGCTCAAGGTCTCAAAGCAACTCCAAGGGCTGCGATTGTGTATCCTTCACCTTCTGCGCGAACTTCAGCTTCCCATTTGTCGCTCTTCAAGGTCGGTTTCTGGATTCTTGTTTGTAATCTTGAGCAATTTCTTTGTTCGTTTGGGTAAATTTTAGTTATGCAACTGACGGGCTGATACTCTTCGAAACAGAGTTCGTTCTTCAGAGGTCAATTTTGTTGCCGGCGCTTTCTTCGATTGAATTCAAATTTTACTCGTACGCGTCATATAGGTAGCATTTCTGGATTTCACTTTTACGATGATCCATGACGAAAATGAAAATTGGGCTATTCTTGGAGTTATAAGATGATGTTTTAGTTAGTTGAACTGATTTAAATGCAAAAGTTTTGAGTAAAAAGATCATTTAGCAGTGTTACAAGCAACTTCTCTTCCAAATTTGTAGTAAATTCTTAGAACTTGAGCAATTTGGTTTGTGCCAATTTGATGGAGTCTATCCAGTATCCAAGGGTTCACAAAAAATTTCTTCTATCCATCCTAATACTAAGGCCCTATGCATAGAGAAACCACCAACTAACTAAAGTTAGTAAGAAACTAAAACAATTGCACCCAAATAACTGTTTAACAAACAAGCTAATTAACAAATTCTCTAACTCATTACATCACAATCTATGCAATGTGGTTAGTTTTTACTCCAATTTGATTGGATTTTGTGGGTTTTGTGTTGCTAAGGGAGTGTGGTGGTATCACCCAGTTGTGTTCTGCCATTGACTGAGGAAAATGTGGAGAAGGTGTTGGATGAGGTAAGGCCAAGCCTGATGGCTGATGGAGGGAATGTTGCTTTGCATGAGATAGATGGGCTTGTTGTGATATTGAAGCTTCAAGGAGCATGTGGCTCTTGCCCAAGCTCAACAATGACACTGAAAATGGGAATTGAGACCAGACTCAGAGACAAGATTCCTGAAATTTTGGAAGTTGAGCAGATCATGGACACTGAAACAGGACTTGAACTCAATGAGGAAAATGTTGAAAAGGTAAAGAGTCTCTCAATTCAATTTTCAGCCATGTAGAAAGGAATTTAAAAACACTTGCATAGATGATCATAGAATTGTTTTGCAAGAACTCAACTGACAGAAGAAGCATGCTTACATAGATGATCATAGAATTTTCATCTATCTAGATATAAATGTTCTAATATATTTCTAAATTCTACACTGCTGCTTATCCATATAGGCATCTTAGGTTGGTGGTAATTTAACAAACTGAAAACTTATCCATTGGAAAGAGAAGTCATTTTACAATCAATCTTTACAGAGATTTTCTATCTGTTTGTTCTGCAAACAATATGAGTGTGGTTTTTTTATGATTTCATTTTGGTTGGTGCTGAGGACAATTGAGAGAGAACAAGAAAACGATTATGTTTCATTGAATACTTAATTGATCTAGAAGCATGACATATAATAGCCTATTTATACCAACAAGATATGAGTAAACAACCAATCTACCCATAGGAGAGAAACTTCAAACCAATTCGAAAAAAAACCTATGGACATCTGAATACCAAATGGGTTTCCACAAAAAGTTGCCCAAAGGCACATAAGATTAAACGAAAAGAGATTTGGGCTTTGAAGTGTTTTCATAAACTTTCTGTACCCCATTTGTTTCTAGTGTGTTTGCTCCACTAGGAAGAAAAGAAATGAGAAGATGAAGGATAAAAGTGTTTGTTTTTTAGCTACTTGCAGAGATTAGGCCATACTTGGCAGGCACAGGAGGTGGAATTTTGGAACTTATGGAGATAAAAGATTATGTTGTTAAGGTGCGGCTAAGTGGACCTGCAGCTGGAGTTATGACAGTTCGAGTTGCTCTCACACAGAAGTTGAGAGAGAAAATTCCAGCCATTGCAGCTGTTCAGCTTGTAGAGTAGCAGCAGCTTTGAAGTGAAAGTGAAGTTTTACTTGCTCATATACTCAATAGATGCTGAGTTAAAGTTGTGACATCTTTTTCTCTTTCTTTTACTTCATTTTTTTTATTTTTACAATTGTAATCAGGTTGGTGGTGAATGTTGAGAATGGAGAAATATGTAGAGTTTTTTTTTTGGTTGGCATTTTCTGTTGTAGCCATTGTTGGATGTTGGAATTTCTCTCATTAATTTATTATACAGAGAGGCAGAGAAAGTGCAAATGAAAATTGAAAAAAGAGAAAAGGAAAAACCTTTCCGTTGCCGGGAATCGAACCCGGGTCTCCTGGGTGAAAGCCAG

mRNA sequence

ATGGTGGGCGCTCTCTCGACTCGAGCTCAAGGTCTCAAAGCAACTCCAAGGGCTGCGATTGTGTATCCTTCACCTTCTGCGCGAACTTCAGCTTCCCATTTGTCGCTCTTCAAGGTCGGTTTCTGGATTCTTGTTTGTAATCTTGAGCAATTTCTTTGTTCGTTTGGTGTGGTGGTATCACCCAGTTGTGTTCTGCCATTGACTGAGGAAAATGTGGAGAAGGTGTTGGATGAGGTAAGGCCAAGCCTGATGGCTGATGGAGGGAATGTTGCTTTGCATGAGATAGATGGGCTTGTTGTGATATTGAAGCTTCAAGGAGCATGTGGCTCTTGCCCAAGCTCAACAATGACACTGAAAATGGGAATTGAGACCAGACTCAGAGACAAGATTCCTGAAATTTTGGAAGTTGAGCAGATCATGGACACTGAAACAGGACTTGAACTCAATGAGGAAAATGTTGAAAAGCTACTTGCAGAGATTAGGCCATACTTGGCAGGCACAGGAGGTGGAATTTTGGAACTTATGGAGATAAAAGATTATGTTGTTAAGGTGCGGCTAAGTGGACCTGCAGCTGGAGTTATGACAGTTCGAGTTGCTCTCACACAGAAGTTGAGAGAGAAAATTCCAGCCATTGCAGCTGTTCAGCTTGTAGAGTAG

Coding sequence (CDS)

ATGGTGGGCGCTCTCTCGACTCGAGCTCAAGGTCTCAAAGCAACTCCAAGGGCTGCGATTGTGTATCCTTCACCTTCTGCGCGAACTTCAGCTTCCCATTTGTCGCTCTTCAAGGTCGGTTTCTGGATTCTTGTTTGTAATCTTGAGCAATTTCTTTGTTCGTTTGGTGTGGTGGTATCACCCAGTTGTGTTCTGCCATTGACTGAGGAAAATGTGGAGAAGGTGTTGGATGAGGTAAGGCCAAGCCTGATGGCTGATGGAGGGAATGTTGCTTTGCATGAGATAGATGGGCTTGTTGTGATATTGAAGCTTCAAGGAGCATGTGGCTCTTGCCCAAGCTCAACAATGACACTGAAAATGGGAATTGAGACCAGACTCAGAGACAAGATTCCTGAAATTTTGGAAGTTGAGCAGATCATGGACACTGAAACAGGACTTGAACTCAATGAGGAAAATGTTGAAAAGCTACTTGCAGAGATTAGGCCATACTTGGCAGGCACAGGAGGTGGAATTTTGGAACTTATGGAGATAAAAGATTATGTTGTTAAGGTGCGGCTAAGTGGACCTGCAGCTGGAGTTATGACAGTTCGAGTTGCTCTCACACAGAAGTTGAGAGAGAAAATTCCAGCCATTGCAGCTGTTCAGCTTGTAGAGTAG

Protein sequence

MVGALSTRAQGLKATPRAAIVYPSPSARTSASHLSLFKVGFWILVCNLEQFLCSFGVVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGGILELMEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLVE
Homology
BLAST of Spg017367 vs. NCBI nr
Match: XP_022929559.1 (nifU-like protein 3, chloroplastic [Cucurbita moschata] >KAG6598879.1 NifU-like protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 339.7 bits (870), Expect = 1.8e-89
Identity = 188/227 (82.82%), Postives = 196/227 (86.34%), Query Frame = 0

Query: 1   MVGALSTRAQGLKATPRAAIVYPSPSARTSASHLSLFKVGFWILVCNLEQFL-----CS- 60
           MV A STRAQ LK TP  A +Y SPS RTSASHLS FK  F+       +FL     C+ 
Sbjct: 1   MVAAFSTRAQALKPTPTTATLYRSPSERTSASHLSFFKSSFFRGQFCSRRFLGFNSSCTR 60

Query: 61  ---FGVVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120
               G VVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC
Sbjct: 61  RRHLGNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120

Query: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGGI 180
           PSSTMTLKMGIETRLRDKIPEILEVEQI+DTETGLELN +NVEKLLAEIRPYLAGTGGGI
Sbjct: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGGI 180

Query: 181 LELMEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLVE 219
           LEL+EIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQL+E
Sbjct: 181 LELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

BLAST of Spg017367 vs. NCBI nr
Match: KAG7029821.1 (NifU-like protein 3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 339.7 bits (870), Expect = 1.8e-89
Identity = 188/227 (82.82%), Postives = 196/227 (86.34%), Query Frame = 0

Query: 1   MVGALSTRAQGLKATPRAAIVYPSPSARTSASHLSLFKVGFWILVCNLEQFL-----CS- 60
           MV A STRAQ LK TP  A +Y SPS RTSASHLS FK  F+       +FL     C+ 
Sbjct: 1   MVAAFSTRAQALKPTPTTATLYRSPSERTSASHLSFFKSSFFRGQFCRRRFLGFNSSCTR 60

Query: 61  ---FGVVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120
               G VVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC
Sbjct: 61  RRHLGNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120

Query: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGGI 180
           PSSTMTLKMGIETRLRDKIPEILEVEQI+DTETGLELN +NVEKLLAEIRPYLAGTGGGI
Sbjct: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGGI 180

Query: 181 LELMEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLVE 219
           LEL+EIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQL+E
Sbjct: 181 LELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

BLAST of Spg017367 vs. NCBI nr
Match: XP_022997561.1 (nifU-like protein 3, chloroplastic [Cucurbita maxima] >XP_023545672.1 nifU-like protein 3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 339.0 bits (868), Expect = 3.1e-89
Identity = 188/227 (82.82%), Postives = 196/227 (86.34%), Query Frame = 0

Query: 1   MVGALSTRAQGLKATPRAAIVYPSPSARTSASHLSLFKVGFWILVCNLEQFL-----CS- 60
           MV A STRAQ LK TP  A +Y SPS RTSASHLS FK  F+       +FL     C+ 
Sbjct: 1   MVAAFSTRAQALKPTPTTAPLYRSPSERTSASHLSFFKSSFFRGQFCSRRFLGFNSSCTR 60

Query: 61  ---FGVVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120
               G VVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC
Sbjct: 61  RRHLGNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120

Query: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGGI 180
           PSSTMTLKMGIETRLRDKIPEILEVEQI+DTETGLELN +NVEKLLAEIRPYLAGTGGGI
Sbjct: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGGI 180

Query: 181 LELMEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLVE 219
           LEL+EIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQL+E
Sbjct: 181 LELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

BLAST of Spg017367 vs. NCBI nr
Match: XP_038889481.1 (nifU-like protein 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 338.2 bits (866), Expect = 5.3e-89
Identity = 188/227 (82.82%), Postives = 197/227 (86.78%), Query Frame = 0

Query: 1   MVGALSTRAQGLKATPRAAIVYPSPSARTSASHLSLFKVGFWILVCNLEQFL-----CS- 60
           MV A STRA  LK+TP AA +Y SPS  TS SHLSLFK  F+       +FL     C+ 
Sbjct: 1   MVAAFSTRAHPLKSTPIAATLYCSPSEPTSPSHLSLFKTSFFRGQFCSRRFLRFNSSCTQ 60

Query: 61  ---FGVVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120
               G VVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC
Sbjct: 61  RRHLGNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120

Query: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGGI 180
           PSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEK+LAEIRPYLAGTGGGI
Sbjct: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVLAEIRPYLAGTGGGI 180

Query: 181 LELMEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLVE 219
           LE++EIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQL+E
Sbjct: 181 LEVIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

BLAST of Spg017367 vs. NCBI nr
Match: TYK01397.1 (nifU-like protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 335.5 bits (859), Expect = 3.4e-88
Identity = 186/227 (81.94%), Postives = 196/227 (86.34%), Query Frame = 0

Query: 1   MVGALSTRAQGLKATPRAAIVYPSPSARTSASHLSLFKVGFWILVCNLEQFL-----CS- 60
           MV   STRAQ  K+TP AA +YPS S  TS SHLSLFK  F+       +FL     C+ 
Sbjct: 1   MVATFSTRAQPFKSTPIAATLYPSSSHPTSPSHLSLFKSSFFRGQFCSRRFLRFNPSCTR 60

Query: 61  ---FGVVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120
               G VVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC
Sbjct: 61  IRRLGNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120

Query: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGGI 180
           PSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEK+L+EIRPYLAGTGGGI
Sbjct: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVLSEIRPYLAGTGGGI 180

Query: 181 LELMEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLVE 219
           LE++EIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQL+E
Sbjct: 181 LEVIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

BLAST of Spg017367 vs. ExPASy Swiss-Prot
Match: Q84RQ7 (NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU3 PE=2 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 7.0e-68
Identity = 131/158 (82.91%), Postives = 150/158 (94.94%), Query Frame = 0

Query: 62  SCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMG 121
           SCV+PLTEENVE+VLDEVRPSLMADGGNVALHEIDGLVV+LKLQGACGSCPSS+MTLKMG
Sbjct: 79  SCVMPLTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMG 138

Query: 122 IETRLRDKIPEILEVEQIMDTET-GLELNEENVEKLLAEIRPYLAGTGGGILELMEIKDY 181
           IE+RLRDKIPEI+ VEQ +++ET GLELN+EN+EK+L+E+RPYL+GTGGG LEL+EI  Y
Sbjct: 139 IESRLRDKIPEIMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGGGGLELVEIDGY 198

Query: 182 VVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLVE 219
           VVKVRL+GPAAGVMTVRVALTQKLRE IP+I AVQL+E
Sbjct: 199 VVKVRLTGPAAGVMTVRVALTQKLRETIPSIGAVQLLE 236

BLAST of Spg017367 vs. ExPASy Swiss-Prot
Match: Q93W20 (NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU2 PE=1 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 3.1e-60
Identity = 131/222 (59.01%), Postives = 161/222 (72.52%), Query Frame = 0

Query: 7   TRAQGLKATPRAAIVYPSPSARTSASHLSLFKVGFWILVCNLEQFLCS---------FGV 66
           T  Q +  +  ++++ P P   +S   L L       L   L +FL S            
Sbjct: 14  TPPQAIDPSSSSSLLLPFPQILSSQRALGLVARPCNPLRRGLSRFLSSRQLFRRSKVVKA 73

Query: 67  VVSPSCVL--PLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSCPSST 126
           V +P  +L  PLTEENVE VLDE+RP LM+DGGNVALHEIDG +V +KLQGACGSCPSST
Sbjct: 74  VATPDPILEVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSST 133

Query: 127 MTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGGILELM 186
           MT+KMGIE RL +KIPEI+ VE + D ETGLELNEEN+EK+L EIRPYL GT  G L+L+
Sbjct: 134 MTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLV 193

Query: 187 EIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLV 218
           EI+D +VK+R++GPAAGVMTVRVA+TQKLREKIP+IAAVQL+
Sbjct: 194 EIEDPIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLI 235

BLAST of Spg017367 vs. ExPASy Swiss-Prot
Match: Q84LK7 (NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.6e-51
Identity = 107/153 (69.93%), Postives = 126/153 (82.35%), Query Frame = 0

Query: 65  LPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIET 124
           LPLT  NVE VLD+VRP L ADGG+VALHEI G VV LKLQGACGSCPSS +T+K GIE 
Sbjct: 73  LPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIER 132

Query: 125 RLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGGILELMEIKDYVVKV 184
           RL +KIP++  VE + D ETGLELNEENVEK+L EIRPYLAGTGGG L+ + IK  +VKV
Sbjct: 133 RLMEKIPDVAAVEPVTDKETGLELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKV 192

Query: 185 RLSGPAAGVMTVRVALTQKLREKIPAIAAVQLV 218
           RL+GPAA V TVR+A+++KLREKIP+I  VQL+
Sbjct: 193 RLTGPAAVVRTVRIAVSKKLREKIPSIQIVQLL 225

BLAST of Spg017367 vs. ExPASy Swiss-Prot
Match: Q93W77 (NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.1e-18
Identity = 54/141 (38.30%), Postives = 88/141 (62.41%), Query Frame = 0

Query: 67  LTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRL 126
           LT +NV+ VL++VRP L++DGGNV +  ++  VV LKLQGAC SCPSS+ T+ MGIE  L
Sbjct: 85  LTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVL 144

Query: 127 RDKIPEIL-EVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGGILELMEIKDYVVKVR 186
           ++K  + L ++ Q+ D E   ++  E V   L  +RP +   GG + E++ ++     V+
Sbjct: 145 KEKFGDALKDIRQVFDEEV-KQITVEAVNAHLDILRPAIKNYGGSV-EVLSVEGEDCVVK 204

Query: 187 LSGPAAGVMTVRVALTQKLRE 207
             GP +  M ++ A+ +K ++
Sbjct: 205 YVGPESIGMGIQAAIKEKFKD 223

BLAST of Spg017367 vs. ExPASy Swiss-Prot
Match: P33179 (Nitrogen fixation protein NifU (Fragment) OS=Anabaena sp. (strain L31) OX=29412 GN=nifU PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-15
Identity = 43/69 (62.32%), Postives = 56/69 (81.16%), Query Frame = 0

Query: 72  VEKVLD-EVRPSLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKI 131
           ++KVLD EVRP L+ADGG+V L+++DG +V + LQGACGSCPSST TLK+ IE+RLRD+I
Sbjct: 44  IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCPSSTATLKIAIESRLRDRI 103

Query: 132 PEILEVEQI 140
              L VE +
Sbjct: 104 NPSLVVEAV 112

BLAST of Spg017367 vs. ExPASy TrEMBL
Match: A0A6J1EP39 (nifU-like protein 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111436107 PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 8.8e-90
Identity = 188/227 (82.82%), Postives = 196/227 (86.34%), Query Frame = 0

Query: 1   MVGALSTRAQGLKATPRAAIVYPSPSARTSASHLSLFKVGFWILVCNLEQFL-----CS- 60
           MV A STRAQ LK TP  A +Y SPS RTSASHLS FK  F+       +FL     C+ 
Sbjct: 1   MVAAFSTRAQALKPTPTTATLYRSPSERTSASHLSFFKSSFFRGQFCSRRFLGFNSSCTR 60

Query: 61  ---FGVVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120
               G VVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC
Sbjct: 61  RRHLGNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120

Query: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGGI 180
           PSSTMTLKMGIETRLRDKIPEILEVEQI+DTETGLELN +NVEKLLAEIRPYLAGTGGGI
Sbjct: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGGI 180

Query: 181 LELMEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLVE 219
           LEL+EIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQL+E
Sbjct: 181 LELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

BLAST of Spg017367 vs. ExPASy TrEMBL
Match: A0A6J1K7T6 (nifU-like protein 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111492451 PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.5e-89
Identity = 188/227 (82.82%), Postives = 196/227 (86.34%), Query Frame = 0

Query: 1   MVGALSTRAQGLKATPRAAIVYPSPSARTSASHLSLFKVGFWILVCNLEQFL-----CS- 60
           MV A STRAQ LK TP  A +Y SPS RTSASHLS FK  F+       +FL     C+ 
Sbjct: 1   MVAAFSTRAQALKPTPTTAPLYRSPSERTSASHLSFFKSSFFRGQFCSRRFLGFNSSCTR 60

Query: 61  ---FGVVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120
               G VVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC
Sbjct: 61  RRHLGNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120

Query: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGGI 180
           PSSTMTLKMGIETRLRDKIPEILEVEQI+DTETGLELN +NVEKLLAEIRPYLAGTGGGI
Sbjct: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGGI 180

Query: 181 LELMEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLVE 219
           LEL+EIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQL+E
Sbjct: 181 LELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

BLAST of Spg017367 vs. ExPASy TrEMBL
Match: A0A5D3BPX3 (NifU-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00910 PE=3 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.7e-88
Identity = 186/227 (81.94%), Postives = 196/227 (86.34%), Query Frame = 0

Query: 1   MVGALSTRAQGLKATPRAAIVYPSPSARTSASHLSLFKVGFWILVCNLEQFL-----CS- 60
           MV   STRAQ  K+TP AA +YPS S  TS SHLSLFK  F+       +FL     C+ 
Sbjct: 1   MVATFSTRAQPFKSTPIAATLYPSSSHPTSPSHLSLFKSSFFRGQFCSRRFLRFNPSCTR 60

Query: 61  ---FGVVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120
               G VVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC
Sbjct: 61  IRRLGNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120

Query: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGGI 180
           PSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEK+L+EIRPYLAGTGGGI
Sbjct: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVLSEIRPYLAGTGGGI 180

Query: 181 LELMEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLVE 219
           LE++EIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQL+E
Sbjct: 181 LEVIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

BLAST of Spg017367 vs. ExPASy TrEMBL
Match: A0A5A7U598 (NifU-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1484G00030 PE=3 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 2.2e-88
Identity = 185/227 (81.50%), Postives = 196/227 (86.34%), Query Frame = 0

Query: 1   MVGALSTRAQGLKATPRAAIVYPSPSARTSASHLSLFKVGFWILVCNLEQFL-----CS- 60
           MV   STRAQ  K+TP AA +YPS S  TS SHLSLFK  F+       +FL     C+ 
Sbjct: 1   MVATFSTRAQPFKSTPIAATLYPSSSHPTSPSHLSLFKSSFFRGQFCSRRFLRFNPSCTR 60

Query: 61  ---FGVVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120
               G V+SPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC
Sbjct: 61  IRRLGNVISPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120

Query: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGGI 180
           PSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEK+L+EIRPYLAGTGGGI
Sbjct: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVLSEIRPYLAGTGGGI 180

Query: 181 LELMEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLVE 219
           LE++EIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQL+E
Sbjct: 181 LEVIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

BLAST of Spg017367 vs. ExPASy TrEMBL
Match: A0A1S3BRP8 (nifU-like protein 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492775 PE=3 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 2.2e-88
Identity = 185/227 (81.50%), Postives = 196/227 (86.34%), Query Frame = 0

Query: 1   MVGALSTRAQGLKATPRAAIVYPSPSARTSASHLSLFKVGFWILVCNLEQFL-----CS- 60
           MV   STRAQ  K+TP AA +YPS S  TS SHLSLFK  F+       +FL     C+ 
Sbjct: 1   MVATFSTRAQPFKSTPIAATLYPSSSHPTSPSHLSLFKSSFFRGQFCSRRFLRFNPSCTR 60

Query: 61  ---FGVVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120
               G V+SPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC
Sbjct: 61  IRRLGNVISPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120

Query: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGGI 180
           PSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEK+L+EIRPYLAGTGGGI
Sbjct: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVLSEIRPYLAGTGGGI 180

Query: 181 LELMEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLVE 219
           LE++EIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQL+E
Sbjct: 181 LEVIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

BLAST of Spg017367 vs. TAIR 10
Match: AT4G25910.1 (NFU domain protein 3 )

HSP 1 Score: 258.5 bits (659), Expect = 5.0e-69
Identity = 131/158 (82.91%), Postives = 150/158 (94.94%), Query Frame = 0

Query: 62  SCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMG 121
           SCV+PLTEENVE+VLDEVRPSLMADGGNVALHEIDGLVV+LKLQGACGSCPSS+MTLKMG
Sbjct: 79  SCVMPLTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMG 138

Query: 122 IETRLRDKIPEILEVEQIMDTET-GLELNEENVEKLLAEIRPYLAGTGGGILELMEIKDY 181
           IE+RLRDKIPEI+ VEQ +++ET GLELN+EN+EK+L+E+RPYL+GTGGG LEL+EI  Y
Sbjct: 139 IESRLRDKIPEIMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGGGGLELVEIDGY 198

Query: 182 VVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLVE 219
           VVKVRL+GPAAGVMTVRVALTQKLRE IP+I AVQL+E
Sbjct: 199 VVKVRLTGPAAGVMTVRVALTQKLRETIPSIGAVQLLE 236

BLAST of Spg017367 vs. TAIR 10
Match: AT5G49940.1 (NIFU-like protein 2 )

HSP 1 Score: 233.0 bits (593), Expect = 2.2e-61
Identity = 131/222 (59.01%), Postives = 161/222 (72.52%), Query Frame = 0

Query: 7   TRAQGLKATPRAAIVYPSPSARTSASHLSLFKVGFWILVCNLEQFLCS---------FGV 66
           T  Q +  +  ++++ P P   +S   L L       L   L +FL S            
Sbjct: 14  TPPQAIDPSSSSSLLLPFPQILSSQRALGLVARPCNPLRRGLSRFLSSRQLFRRSKVVKA 73

Query: 67  VVSPSCVL--PLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSCPSST 126
           V +P  +L  PLTEENVE VLDE+RP LM+DGGNVALHEIDG +V +KLQGACGSCPSST
Sbjct: 74  VATPDPILEVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSST 133

Query: 127 MTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGGILELM 186
           MT+KMGIE RL +KIPEI+ VE + D ETGLELNEEN+EK+L EIRPYL GT  G L+L+
Sbjct: 134 MTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLV 193

Query: 187 EIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLV 218
           EI+D +VK+R++GPAAGVMTVRVA+TQKLREKIP+IAAVQL+
Sbjct: 194 EIEDPIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLI 235

BLAST of Spg017367 vs. TAIR 10
Match: AT5G49940.2 (NIFU-like protein 2 )

HSP 1 Score: 147.1 bits (370), Expect = 1.6e-35
Identity = 86/161 (53.42%), Postives = 106/161 (65.84%), Query Frame = 0

Query: 7   TRAQGLKATPRAAIVYPSPSARTSASHLSLFKVGFWILVCNLEQFLCS---------FGV 66
           T  Q +  +  ++++ P P   +S   L L       L   L +FL S            
Sbjct: 14  TPPQAIDPSSSSSLLLPFPQILSSQRALGLVARPCNPLRRGLSRFLSSRQLFRRSKVVKA 73

Query: 67  VVSPSCVL--PLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSCPSST 126
           V +P  +L  PLTEENVE VLDE+RP LM+DGGNVALHEIDG +V +KLQGACGSCPSST
Sbjct: 74  VATPDPILEVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSST 133

Query: 127 MTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKL 157
           MT+KMGIE RL +KIPEI+ VE + D ETGLELNEEN+EK+
Sbjct: 134 MTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKV 174

BLAST of Spg017367 vs. TAIR 10
Match: AT4G01940.1 (NFU domain protein 1 )

HSP 1 Score: 92.8 bits (229), Expect = 3.6e-19
Identity = 54/141 (38.30%), Postives = 88/141 (62.41%), Query Frame = 0

Query: 67  LTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRL 126
           LT +NV+ VL++VRP L++DGGNV +  ++  VV LKLQGAC SCPSS+ T+ MGIE  L
Sbjct: 85  LTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVL 144

Query: 127 RDKIPEIL-EVEQIMDTETGLELNEENVEKLLAEIRPYLAGTGGGILELMEIKDYVVKVR 186
           ++K  + L ++ Q+ D E   ++  E V   L  +RP +   GG + E++ ++     V+
Sbjct: 145 KEKFGDALKDIRQVFDEEV-KQITVEAVNAHLDILRPAIKNYGGSV-EVLSVEGEDCVVK 204

Query: 187 LSGPAAGVMTVRVALTQKLRE 207
             GP +  M ++ A+ +K ++
Sbjct: 205 YVGPESIGMGIQAAIKEKFKD 223

BLAST of Spg017367 vs. TAIR 10
Match: AT1G51390.1 (NFU domain protein 5 )

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-08
Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = 0

Query: 79  VRPSLMADGGNVAL--HEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEV 138
           +RPS+  DGG++     + +  +V L++QGAC  CPSS++TLK GIE  L   + E+  V
Sbjct: 199 IRPSVQDDGGDIEYCGFDTETGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYVSEVKGV 258

Query: 139 EQIMDTE 144
           EQ  D E
Sbjct: 259 EQEFDGE 265

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022929559.11.8e-8982.82nifU-like protein 3, chloroplastic [Cucurbita moschata] >KAG6598879.1 NifU-like ... [more]
KAG7029821.11.8e-8982.82NifU-like protein 3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022997561.13.1e-8982.82nifU-like protein 3, chloroplastic [Cucurbita maxima] >XP_023545672.1 nifU-like ... [more]
XP_038889481.15.3e-8982.82nifU-like protein 3, chloroplastic [Benincasa hispida][more]
TYK01397.13.4e-8881.94nifU-like protein 3 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Q84RQ77.0e-6882.91NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU3 PE=2... [more]
Q93W203.1e-6059.01NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU2 PE=1... [more]
Q84LK71.6e-5169.93NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=N... [more]
Q93W775.1e-1838.30NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU1 PE=1... [more]
P331791.4e-1562.32Nitrogen fixation protein NifU (Fragment) OS=Anabaena sp. (strain L31) OX=29412 ... [more]
Match NameE-valueIdentityDescription
A0A6J1EP398.8e-9082.82nifU-like protein 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111436107... [more]
A0A6J1K7T61.5e-8982.82nifU-like protein 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111492451 P... [more]
A0A5D3BPX31.7e-8881.94NifU-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G0... [more]
A0A5A7U5982.2e-8881.50NifU-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1484... [more]
A0A1S3BRP82.2e-8881.50nifU-like protein 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492775 PE=3 ... [more]
Match NameE-valueIdentityDescription
AT4G25910.15.0e-6982.91NFU domain protein 3 [more]
AT5G49940.12.2e-6159.01NIFU-like protein 2 [more]
AT5G49940.21.6e-3553.42NIFU-like protein 2 [more]
AT4G01940.13.6e-1938.30NFU domain protein 1 [more]
AT1G51390.13.7e-0843.28NFU domain protein 5 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001075NIF system FeS cluster assembly, NifU, C-terminalPFAMPF01106NifUcoord: 72..137
e-value: 1.7E-26
score: 92.1
coord: 153..215
e-value: 5.6E-12
score: 45.7
IPR034904Fe-S cluster assembly domain superfamilyGENE3D3.30.300.130coord: 64..146
e-value: 2.0E-32
score: 113.1
IPR034904Fe-S cluster assembly domain superfamilyGENE3D3.30.300.130coord: 147..218
e-value: 1.1E-21
score: 78.7
IPR034904Fe-S cluster assembly domain superfamilySUPERFAMILY117916Fe-S cluster assembly (FSCA) domain-likecoord: 69..144
IPR034904Fe-S cluster assembly domain superfamilySUPERFAMILY117916Fe-S cluster assembly (FSCA) domain-likecoord: 147..217
NoneNo IPR availablePANTHERPTHR11178IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATEDcoord: 55..218
NoneNo IPR availablePANTHERPTHR11178:SF25NIFU-LIKE PROTEIN 3, CHLOROPLASTICcoord: 55..218

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg017367.1Spg017367.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0048564 photosystem I assembly
biological_process GO:0097428 protein maturation by iron-sulfur cluster transfer
cellular_component GO:0009507 chloroplast
cellular_component GO:0005739 mitochondrion
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0060090 molecular adaptor activity
molecular_function GO:0051536 iron-sulfur cluster binding