Spg017315 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg017315
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA ligase
Location	scaffold4: 40722248 .. 40725417 (-)
RNA-Seq Expression	Spg017315
Synteny	Spg017315

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGAAGGCAGACGCGCAATTGAGGAGCAAACGCGAATGGCTGAAGCGAACCGACGAAGAACCGGCGTGGGAGAACTCGCGAACGAACGAAGAACGGCGGAGACGAACGAACGAACCAGCAAACGGCGGTGGGAGAGGTTGCCGGTGAATGGGTCGTCGGGAGGTGGGCTTGCCGGTGAATGGGTCGTCGGGAGGTTGGCTCGCCGGTGAATGGGTCGACGGGAGGAAGACTTGCCGGAGGAATTAGGGTTTTGACGGCTAGGGTTTTATTTTAGGGTTTTGCTCTGATACCATGTGGTTTTTTAGGAGAAAATTGATTATTATTCACTAGCCTCCAAAAGACAAATATATAAAGAGTACAAAAATACATAAAAGGAAAAAACATCAAGATGGAATAGAATTTAATCTAAATAAGGGAAAAATAAAATTGAATGAAATAATCTACATATTTCAATTTAACTCATATTGCTGTGGGAAAATATAGTGCATCCAAAAATCAATTGGATGGTACTTCTGTAGTTCAGATGTCACTTTTTTGGTAATCTGAAAGATCAGGCATCGGAATTCATATTTTAGGAGCAGATGCCCAAACAATCCCTAGCTAATGGAATGAAGAGAGGGGAATGGGCTGAGGGATTGTACGCTACAAGCCTGCAAATATTTAGGATGTGTATGGGAAGTTGGTGAGAAGGAAGAACTGGTAAACAGTGAGGACTAAGTAACATTGCCAAATTGGATCTGAAGATTCTGAACCCAAATATGAATGGCCAATAACTCCGTCGAACAAAGACTATGTAAGGTATCTCCTTACAACGTATTGATATTCAGAGGAAGAAAATAGTCCTAAGGCTTTACAAAACCTCCCAGCCAATTCGAGAGGACAGGTAAGCTCTCCCTTCCTCACACTACAACCAGAATAAAAGAATGAAAATGAGAAGAGAAAATCCTACCAACTATATACTCCCTCACTCCCCTGCCTAACAGCTTTCACAGACCACACACCCACATTACGGGTTGAAAACAATACTAACAAATCATCAGAGCCTTTCCTTTCCGACCCTTTCTCTCATAATATTTGATAATTGGAGGCCTAACAGATTATTTACATAACGTAAGTTGAAAATGATACTATCAAATCATTTTAGATAAGACCAAAATATCCAAATACAACATTCTTAAGTCAGAAAAACCCGGATCAAAAATAATTCTTGTGAAATACAGAGCATGCCTTGTAATGGGCTCAAATGGTTTCAGCTTCATATTGGAGTTCAGCCTCAAAACAACATTAAGCTTTGCAATCATAGGTTTAACTGTGGTTCTTGCTTGTTGCTGAACACAAATTGATAGACACTTATTTATTTATTTATTATAATATATGATAATGATAGACACTCTTAACCGGTTGTTTTTAAGCTACAATATTCTGATATATCTTTTGAAGTACTTGCTGTCTCTTTTCAGGAAAAGTGAATATCCAAAGAAGACTGCACCGAGTTTTTACCAAGTTACGAATAATTCGAAAGAAAGGCCAGATGTTTGGGTTGAAAGCCCAGAGAAGTTAACATTCTTATAATTTTTCTGTCATACTCGTAAAGCTTTTGATGGTATTAGACAGACTGTAATCTTTTTTGCCTCGATTTTCTTCAATTTTGCAGATCAATCATTCTTTCTATTACCAGTGACATACGAACTATAAAATCTGAGGTGTGTTTTTCAATTACAATTTCTAATTTTTCTACTTATCTAGATATGTTATTATTCTTCAGGAATCAATGGGACTGTAGCTTTAAATATCTACTTAATGGCCAGGTTCTATTTAATATCATATGGAACTGTAGCTTTAAATATCTACTTAATGAGCCGGTTCTATTTATTTATGTTGTTCTAGGTCTTTGCAGCACCATATAGCCTAAGATTTCCACGTATAGACCGTGTTCGATATGACAAACCTTGGCATGAATGTCTTGATGTTCAATGTAAGAGATACTCTTTTTGAATGCTCTTGCTAATAAATTTAATTTAATCTTGATAAATAACCAACCTACTGTTAAAATTGTAGTACCATCCTCCAATCGTCTTCCTTTATCCACCTCATCATTATATTACTGAAGTAAGTTTTATTGGGAAATTACATTTATAGCTGCTTTTTCTTATAAGTTTTATGGTTGTAAGTTTTATAGGGAAATTACATTTATAGCTGCTTTTTCTTTTAGAAAACAACAACGTATCAGTATAACAAGAGAATAGGACAATTGATCCTCTATCTGAAATGAGAAATAAAAAACTTATAAGAAAGATCCATTTAGTACATTGAAGCCAAAAACACGAAATCTAATGATATATTCATTGTTCAGTATGCCTAACAAGGTAGCCAATATGTTGGAAAGAATCTTCAGGAATTTCCTTTGGAAAGATAGTCAGCACCTTATTAGGTGGAGCACCATTACATGCCCAATGAAGCAAGGTGGCCTTGGATTGCATTCCATGAGAGACAAGACAAGAACAAGGCTCTCCTTGCTAAATGGATTTGGAGGTTTAACTAACCATGAGAAGGGAGCATTAGGGAGGAAACTTATCAATGAAAAATATGGATCCTCCTCTTATTTGAATTGGGCATCTCTTGCCAAAACCAAAGGCCGATGGAAAGCCATTGTCAAACACCAAGAGCTTATTACTAGTAGAATTTGTCACCAAGGGGGGATGGAGCATCTATACGCTTTTGGTTTGACCCTTGGGTAACAAACCCCTCTTTGGCCACCCGCTTCCCCTATTGCACAGGCTCTCGTTGCAAAATTACCATGGTGAAAGAAGTGTGGAACCAGAGTTGTTCTTTTTGGGACCTATAGTTTGGTAGACATTTGAAGGATGACGAAGCTTCTGAATGGATTGACATGAATTATATCCTTGAATCCATTGTCCTCTCTCAAACCGAAGACTCGTGGAAATGGCTTTTTAGCTCCAACGACCTCTTCTCCACTAAATCTTTGATGGCCAATATGGGGATCGGGCTATTTGGAGAGGTAAATACCCAAGGAAGATCAAATTCTTCCTTTGGGAATGGGCACATAGAGCCATTAGTACCAAAGATAATTTATAGAGACACATGCCTACTTTGGCCCTATCCCCGAGTTGGTGTTCATTGTGCAAGCAAAACGACAAAACTCTAG

mRNA sequence

ATGAACGAAGGCAGACGCGCAATTGAGGAGCAAACGCGAATGGCTGAAGCGAACCGACGAAGAACCGGCGTGGGAGAACTCGCGAACGAACGAAGAACGGCGGAGACGAACGAACGAACCAGCAAACGGCGGTGGGAGAGGTTGCCGGTGAATGGGTCGTCGGGAGGTGGGCTTGCCGGTGAATGGGTCGTCGGGAGGAAAAGTGAATATCCAAAGAAGACTGCACCGAGTTTTTACCAAGTTACGAATAATTCGAAAGAAAGGCCAGATGTTTGGGTTGAAAGCCCAGAGAAATCAATCATTCTTTCTATTACCAGTGACATACGAACTATAAAATCTGAGGTCTTTGCAGCACCATATAGCCTAAGATTTCCACGTATAGACCGTGTTCGATATGACAAACCTTGGCATGAATGTCTTGATGTTCAATCCAATATGTTGGAAAGAATCTTCAGGAATTTCCTTTGGAAAGATAGTCAGCACCTTATTAGGTGGAGCACCATTACATGCCCAATGAAGCAAGGTGGCCTTGGATTGCATTCCATGAGAGACAAGACAAGAACAAGGCTCTCCTTGCTAAATGGATTTGGAGGTTTAACTAACCATGAGAAGGGAGCATTAGGGAGGAAACTTATCAATGAAAAATATGGATCCTCCTCTTATTTGAATTGGGCATCTCTTGCCAAAACCAAAGGCCGATGGAAAGCCATTGTCAAACACCAAGAGCTTATTACTAGTAGAATTTGTCACCAAGGGGGGATGGAGCATCTATACGCTTTTGGTTTGACCCTTGGACATTTGAAGGATGACGAAGCTTCTGAATGGATTGACATGAATTATATCCTTGAATCCATTGTCCTCTCTCAAACCGAAGACTCGTGGAAATGGCTTTTTAGCTCCAACGACCTCTTCTCCACTAAATCTTTGATGGCCAATATGGGGATCGGGCTATTTGGAGAGGTAAATACCCAAGGAAGATCAAATTCTTCCTTTGGGAATGGGCACATAGAGCCATTAGTACCAAAGATAATTTATAGAGACACATGCCTACTTTGGCCCTATCCCCGAGTTGGTGTTCATTGTGCAAGCAAAACGACAAAACTCTAG

Coding sequence (CDS)

ATGAACGAAGGCAGACGCGCAATTGAGGAGCAAACGCGAATGGCTGAAGCGAACCGACGAAGAACCGGCGTGGGAGAACTCGCGAACGAACGAAGAACGGCGGAGACGAACGAACGAACCAGCAAACGGCGGTGGGAGAGGTTGCCGGTGAATGGGTCGTCGGGAGGTGGGCTTGCCGGTGAATGGGTCGTCGGGAGGAAAAGTGAATATCCAAAGAAGACTGCACCGAGTTTTTACCAAGTTACGAATAATTCGAAAGAAAGGCCAGATGTTTGGGTTGAAAGCCCAGAGAAATCAATCATTCTTTCTATTACCAGTGACATACGAACTATAAAATCTGAGGTCTTTGCAGCACCATATAGCCTAAGATTTCCACGTATAGACCGTGTTCGATATGACAAACCTTGGCATGAATGTCTTGATGTTCAATCCAATATGTTGGAAAGAATCTTCAGGAATTTCCTTTGGAAAGATAGTCAGCACCTTATTAGGTGGAGCACCATTACATGCCCAATGAAGCAAGGTGGCCTTGGATTGCATTCCATGAGAGACAAGACAAGAACAAGGCTCTCCTTGCTAAATGGATTTGGAGGTTTAACTAACCATGAGAAGGGAGCATTAGGGAGGAAACTTATCAATGAAAAATATGGATCCTCCTCTTATTTGAATTGGGCATCTCTTGCCAAAACCAAAGGCCGATGGAAAGCCATTGTCAAACACCAAGAGCTTATTACTAGTAGAATTTGTCACCAAGGGGGGATGGAGCATCTATACGCTTTTGGTTTGACCCTTGGACATTTGAAGGATGACGAAGCTTCTGAATGGATTGACATGAATTATATCCTTGAATCCATTGTCCTCTCTCAAACCGAAGACTCGTGGAAATGGCTTTTTAGCTCCAACGACCTCTTCTCCACTAAATCTTTGATGGCCAATATGGGGATCGGGCTATTTGGAGAGGTAAATACCCAAGGAAGATCAAATTCTTCCTTTGGGAATGGGCACATAGAGCCATTAGTACCAAAGATAATTTATAGAGACACATGCCTACTTTGGCCCTATCCCCGAGTTGGTGTTCATTGTGCAAGCAAAACGACAAAACTCTAG

Protein sequence

MNEGRRAIEEQTRMAEANRRRTGVGELANERRTAETNERTSKRRWERLPVNGSSGGGLAGEWVVGRKSEYPKKTAPSFYQVTNNSKERPDVWVESPEKSIILSITSDIRTIKSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSNMLERIFRNFLWKDSQHLIRWSTITCPMKQGGLGLHSMRDKTRTRLSLLNGFGGLTNHEKGALGRKLINEKYGSSSYLNWASLAKTKGRWKAIVKHQELITSRICHQGGMEHLYAFGLTLGHLKDDEASEWIDMNYILESIVLSQTEDSWKWLFSSNDLFSTKSLMANMGIGLFGEVNTQGRSNSSFGNGHIEPLVPKIIYRDTCLLWPYPRVGVHCASKTTKL

Homology

[Close]

BLAST of Spg017315 vs. NCBI nr
Match: XP_011648962.1 (DNA ligase 4 isoform X3 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 1.8e-36
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 66  RKSEYPKKTAPSFYQVTNNSKERPDVWVESPEKSIILSITSDIRTIKSEVFAAPYSLRFP 125
           RKSEYP+KTAPSFYQVTNNSKERPDVW+ESPEKSIILSITSDIRTIKSEVFAAPYSLRFP
Sbjct: 355 RKSEYPRKTAPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIKSEVFAAPYSLRFP 414

Query: 126 RIDRVRYDKPWHECLDVQS 145
           RIDRVRYDKPWHECLDVQS
Sbjct: 415 RIDRVRYDKPWHECLDVQS 433

[Close]

BLAST of Spg017315 vs. NCBI nr
Match: XP_016901805.1 (PREDICTED: DNA ligase 4 isoform X4 [Cucumis melo])

HSP 1 Score: 164.5 bits (415), Expect = 1.8e-36
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 66  RKSEYPKKTAPSFYQVTNNSKERPDVWVESPEKSIILSITSDIRTIKSEVFAAPYSLRFP 125
           RKSEYP+KTAPSFYQVTNNSKERPDVW+ESPEKSIILSITSDIRTIKSEVFAAPYSLRFP
Sbjct: 456 RKSEYPRKTAPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIKSEVFAAPYSLRFP 515

Query: 126 RIDRVRYDKPWHECLDVQS 145
           RIDRVRYDKPWHECLDVQS
Sbjct: 516 RIDRVRYDKPWHECLDVQS 534

[Close]

BLAST of Spg017315 vs. NCBI nr
Match: XP_011648959.1 (DNA ligase 4 isoform X1 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 1.8e-36
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 66  RKSEYPKKTAPSFYQVTNNSKERPDVWVESPEKSIILSITSDIRTIKSEVFAAPYSLRFP 125
           RKSEYP+KTAPSFYQVTNNSKERPDVW+ESPEKSIILSITSDIRTIKSEVFAAPYSLRFP
Sbjct: 515 RKSEYPRKTAPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIKSEVFAAPYSLRFP 574

Query: 126 RIDRVRYDKPWHECLDVQS 145
           RIDRVRYDKPWHECLDVQS
Sbjct: 575 RIDRVRYDKPWHECLDVQS 593

[Close]

BLAST of Spg017315 vs. NCBI nr
Match: XP_008451172.1 (PREDICTED: DNA ligase 4 isoform X2 [Cucumis melo])

HSP 1 Score: 164.5 bits (415), Expect = 1.8e-36
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 66  RKSEYPKKTAPSFYQVTNNSKERPDVWVESPEKSIILSITSDIRTIKSEVFAAPYSLRFP 125
           RKSEYP+KTAPSFYQVTNNSKERPDVW+ESPEKSIILSITSDIRTIKSEVFAAPYSLRFP
Sbjct: 514 RKSEYPRKTAPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIKSEVFAAPYSLRFP 573

Query: 126 RIDRVRYDKPWHECLDVQS 145
           RIDRVRYDKPWHECLDVQS
Sbjct: 574 RIDRVRYDKPWHECLDVQS 592

[Close]

BLAST of Spg017315 vs. NCBI nr
Match: XP_016901803.1 (PREDICTED: DNA ligase 4 isoform X3 [Cucumis melo])

HSP 1 Score: 164.5 bits (415), Expect = 1.8e-36
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 66  RKSEYPKKTAPSFYQVTNNSKERPDVWVESPEKSIILSITSDIRTIKSEVFAAPYSLRFP 125
           RKSEYP+KTAPSFYQVTNNSKERPDVW+ESPEKSIILSITSDIRTIKSEVFAAPYSLRFP
Sbjct: 508 RKSEYPRKTAPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIKSEVFAAPYSLRFP 567

Query: 126 RIDRVRYDKPWHECLDVQS 145
           RIDRVRYDKPWHECLDVQS
Sbjct: 568 RIDRVRYDKPWHECLDVQS 586

[Close]

BLAST of Spg017315 vs. ExPASy Swiss-Prot
Match: Q9LL84 (DNA ligase 4 OS=Arabidopsis thaliana OX=3702 GN=LIG4 PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.5e-35
Identity = 68/79 (86.08%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 66  RKSEYPKKTAPSFYQVTNNSKERPDVWVESPEKSIILSITSDIRTIKSEVFAAPYSLRFP 125
           RK+E+PKK  PSFYQVTN+SKERPDVW++SPEKSIILSITSDIRTI+SEVF APYSLRFP
Sbjct: 517 RKNEHPKKAPPSFYQVTNHSKERPDVWIDSPEKSIILSITSDIRTIRSEVFVAPYSLRFP 576

Query: 126 RIDRVRYDKPWHECLDVQS 145
           RID+VRYDKPWHECLDVQ+
Sbjct: 577 RIDKVRYDKPWHECLDVQA 595

[Close]

BLAST of Spg017315 vs. ExPASy Swiss-Prot
Match: Q7X7E9 (Putative DNA ligase 4 OS=Oryza sativa subsp. japonica OX=39947 GN=LIG4 PE=2 SV=2)

HSP 1 Score: 132.9 bits (333), Expect = 7.5e-30
Identity = 66/96 (68.75%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 66  RKSEYPKKTAPSFYQVTNNSKERPDVWVESPEK-----------------SIILSITSDI 125
           RK+EYPKK  P FY+VTN+SKERPDVW+ESP+K                 S+I+SITSDI
Sbjct: 596 RKNEYPKK-PPRFYEVTNHSKERPDVWIESPDKQSVRFRKHLIYCITKCRSVIISITSDI 655

Query: 126 RTIKSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQS 145
           RTIKSEVFAAPYSLRFPRI R+RYDKPWHECLDVQ+
Sbjct: 656 RTIKSEVFAAPYSLRFPRIQRLRYDKPWHECLDVQA 690

[Close]

BLAST of Spg017315 vs. ExPASy Swiss-Prot
Match: Q1DKE7 (DNA ligase 4 OS=Coccidioides immitis (strain RS) OX=246410 GN=LIG4 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 9.8e-06
Identity = 31/89 (34.83%), Postives = 46/89 (51.69%), Query Frame = 0


Query: 60  GEWVVGRKSEYPKKTAPSFYQVTNNSK--ERPDVWVESPEKSIILSITSDIRTIKSEVFA 119
           G+W    K   PKK    F ++       ERPDVW+  P++S++L + +   T  S+ F 
Sbjct: 580 GKW----KDWNPKKPPTEFIELAGGDAQYERPDVWIR-PDESVVLCVKAASVT-PSDQFR 639

Query: 120 APYSLRFPRIDRVRYDKPWHECLDVQSNM 147
              ++RFPR  R+R DK W   L +Q  M
Sbjct: 640 LGLTVRFPRFKRLRMDKDWKSALSIQEFM 662

[Close]

BLAST of Spg017315 vs. ExPASy Swiss-Prot
Match: Q54CR9 (DNA ligase 4 OS=Dictyostelium discoideum OX=44689 GN=lig4 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.7e-05
Identity = 23/64 (35.94%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 76  PSFYQVTNNSKERPDVWVESPEKSIILSITSDIRTIKSEVFAAPYSLRFPRIDRVRYDKP 135
           PS  Q+    KE+PDVW++    S +L I +  + + ++ +   Y+LRFPR+ ++R DK 
Sbjct: 697 PSIIQLAEPFKEKPDVWIDPRVYSKVLQIKAS-QIVVTDKYKCGYTLRFPRVLKIRDDKG 756

Query: 136 WHEC 140
           W +C
Sbjct: 757 WKDC 759

[Close]

BLAST of Spg017315 vs. ExPASy Swiss-Prot
Match: Q8BTF7 (DNA ligase 4 OS=Mus musculus OX=10090 GN=Lig4 PE=2 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 1.7e-05
Identity = 26/71 (36.62%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 70  YPKKTAPSFYQVTNNSKERPDVWVESPEKSIILSITSDIRTIKSEVFAAPYSLRFPRIDR 129
           + KK+ PS         E+P+V++E P+ S+I+ I +    + S+++    +LRFPRI++
Sbjct: 529 FHKKSPPSSILC---GTEKPEVYIE-PQNSVIVQIKA-AEIVPSDMYKTGSTLRFPRIEK 588

Query: 130 VRYDKPWHECL 141
           +R DK WHEC+
Sbjct: 589 IRDDKEWHECM 594

[Close]

BLAST of Spg017315 vs. ExPASy TrEMBL
Match: A0A0A0LHC7 (DNA ligase OS=Cucumis sativus OX=3659 GN=Csa_2G061570 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 8.6e-37
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 66  RKSEYPKKTAPSFYQVTNNSKERPDVWVESPEKSIILSITSDIRTIKSEVFAAPYSLRFP 125
           RKSEYP+KTAPSFYQVTNNSKERPDVW+ESPEKSIILSITSDIRTIKSEVFAAPYSLRFP
Sbjct: 515 RKSEYPRKTAPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIKSEVFAAPYSLRFP 574

Query: 126 RIDRVRYDKPWHECLDVQS 145
           RIDRVRYDKPWHECLDVQS
Sbjct: 575 RIDRVRYDKPWHECLDVQS 593

[Close]

BLAST of Spg017315 vs. ExPASy TrEMBL
Match: A0A1S3BQX9 (DNA ligase OS=Cucumis melo OX=3656 GN=LOC103492544 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 8.6e-37
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 66  RKSEYPKKTAPSFYQVTNNSKERPDVWVESPEKSIILSITSDIRTIKSEVFAAPYSLRFP 125
           RKSEYP+KTAPSFYQVTNNSKERPDVW+ESPEKSIILSITSDIRTIKSEVFAAPYSLRFP
Sbjct: 514 RKSEYPRKTAPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIKSEVFAAPYSLRFP 573

Query: 126 RIDRVRYDKPWHECLDVQS 145
           RIDRVRYDKPWHECLDVQS
Sbjct: 574 RIDRVRYDKPWHECLDVQS 592

[Close]

BLAST of Spg017315 vs. ExPASy TrEMBL
Match: A0A1S3BRM3 (DNA ligase OS=Cucumis melo OX=3656 GN=LOC103492544 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 8.6e-37
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 66  RKSEYPKKTAPSFYQVTNNSKERPDVWVESPEKSIILSITSDIRTIKSEVFAAPYSLRFP 125
           RKSEYP+KTAPSFYQVTNNSKERPDVW+ESPEKSIILSITSDIRTIKSEVFAAPYSLRFP
Sbjct: 514 RKSEYPRKTAPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIKSEVFAAPYSLRFP 573

Query: 126 RIDRVRYDKPWHECLDVQS 145
           RIDRVRYDKPWHECLDVQS
Sbjct: 574 RIDRVRYDKPWHECLDVQS 592

[Close]

BLAST of Spg017315 vs. ExPASy TrEMBL
Match: A0A1S3BRY5 (DNA ligase OS=Cucumis melo OX=3656 GN=LOC103492544 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 8.6e-37
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 66  RKSEYPKKTAPSFYQVTNNSKERPDVWVESPEKSIILSITSDIRTIKSEVFAAPYSLRFP 125
           RKSEYP+KTAPSFYQVTNNSKERPDVW+ESPEKSIILSITSDIRTIKSEVFAAPYSLRFP
Sbjct: 354 RKSEYPRKTAPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIKSEVFAAPYSLRFP 413

Query: 126 RIDRVRYDKPWHECLDVQS 145
           RIDRVRYDKPWHECLDVQS
Sbjct: 414 RIDRVRYDKPWHECLDVQS 432

[Close]

BLAST of Spg017315 vs. ExPASy TrEMBL
Match: A0A1S4E0Q0 (DNA ligase OS=Cucumis melo OX=3656 GN=LOC103492544 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 8.6e-37
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 66  RKSEYPKKTAPSFYQVTNNSKERPDVWVESPEKSIILSITSDIRTIKSEVFAAPYSLRFP 125
           RKSEYP+KTAPSFYQVTNNSKERPDVW+ESPEKSIILSITSDIRTIKSEVFAAPYSLRFP
Sbjct: 508 RKSEYPRKTAPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIKSEVFAAPYSLRFP 567

Query: 126 RIDRVRYDKPWHECLDVQS 145
           RIDRVRYDKPWHECLDVQS
Sbjct: 568 RIDRVRYDKPWHECLDVQS 586

[Close]

BLAST of Spg017315 vs. TAIR 10
Match: AT5G57160.1 (DNA ligase IV )

HSP 1 Score: 150.6 bits (379), Expect = 2.5e-36
Identity = 68/79 (86.08%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 66  RKSEYPKKTAPSFYQVTNNSKERPDVWVESPEKSIILSITSDIRTIKSEVFAAPYSLRFP 125
           RK+E+PKK  PSFYQVTN+SKERPDVW++SPEKSIILSITSDIRTI+SEVF APYSLRFP
Sbjct: 517 RKNEHPKKAPPSFYQVTNHSKERPDVWIDSPEKSIILSITSDIRTIRSEVFVAPYSLRFP 576

Query: 126 RIDRVRYDKPWHECLDVQS 145
           RID+VRYDKPWHECLDVQ+
Sbjct: 577 RIDKVRYDKPWHECLDVQA 595

The following BLAST results are available for this feature:

BLAST of Spg017315 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648962.1	1.8e-36	97.47	DNA ligase 4 isoform X3 [Cucumis sativus]	[more]
XP_016901805.1	1.8e-36	97.47	PREDICTED: DNA ligase 4 isoform X4 [Cucumis melo]	[more]
XP_011648959.1	1.8e-36	97.47	DNA ligase 4 isoform X1 [Cucumis sativus]	[more]
XP_008451172.1	1.8e-36	97.47	PREDICTED: DNA ligase 4 isoform X2 [Cucumis melo]	[more]
XP_016901803.1	1.8e-36	97.47	PREDICTED: DNA ligase 4 isoform X3 [Cucumis melo]	[more]

BLAST of Spg017315 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LL84	3.5e-35	86.08	DNA ligase 4 OS=Arabidopsis thaliana OX=3702 GN=LIG4 PE=1 SV=1	[more]
Q7X7E9	7.5e-30	68.75	Putative DNA ligase 4 OS=Oryza sativa subsp. japonica OX=39947 GN=LIG4 PE=2 SV=2	[more]
Q1DKE7	9.8e-06	34.83	DNA ligase 4 OS=Coccidioides immitis (strain RS) OX=246410 GN=LIG4 PE=3 SV=1	[more]
Q54CR9	1.7e-05	35.94	DNA ligase 4 OS=Dictyostelium discoideum OX=44689 GN=lig4 PE=3 SV=1	[more]
Q8BTF7	1.7e-05	36.62	DNA ligase 4 OS=Mus musculus OX=10090 GN=Lig4 PE=2 SV=2	[more]

BLAST of Spg017315 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHC7	8.6e-37	97.47	DNA ligase OS=Cucumis sativus OX=3659 GN=Csa_2G061570 PE=3 SV=1	[more]
A0A1S3BQX9	8.6e-37	97.47	DNA ligase OS=Cucumis melo OX=3656 GN=LOC103492544 PE=3 SV=1	[more]
A0A1S3BRM3	8.6e-37	97.47	DNA ligase OS=Cucumis melo OX=3656 GN=LOC103492544 PE=3 SV=1	[more]
A0A1S3BRY5	8.6e-37	97.47	DNA ligase OS=Cucumis melo OX=3656 GN=LOC103492544 PE=3 SV=1	[more]
A0A1S4E0Q0	8.6e-37	97.47	DNA ligase OS=Cucumis melo OX=3656 GN=LOC103492544 PE=3 SV=1	[more]

BLAST of Spg017315 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57160.1	2.5e-36	86.08	DNA ligase IV	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 58..152 e-value: 2.2E-17 score: 65.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
IPR029710	DNA ligase 4	PANTHER	PTHR45997	DNA LIGASE 4	coord: 66..144
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 74..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg017315.1	Spg017315.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0051103	DNA ligation involved in DNA repair
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006260	DNA replication
biological_process	GO:0006303	double-strand break repair via nonhomologous end joining
biological_process	GO:0006297	nucleotide-excision repair, DNA gap filling
biological_process	GO:0010165	response to X-ray
biological_process	GO:0006281	DNA repair
cellular_component	GO:0032807	DNA ligase IV complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003910	DNA ligase (ATP) activity