Spg017235 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg017235
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon protein
Location	scaffold4: 39896603 .. 39902302 (-)
RNA-Seq Expression	Spg017235
Synteny	Spg017235

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCATGTTGGATTCGATGGGTTAGGACTTCGGGGAATGCGTGGTAGGGGGTAGTCGGAGTCCTTTCGAGCCTGGTGAGGGAGGTGTTTGAAGGTTTGTTCTCTATCCTTGGCCGGCCGATGATGAATGCCTTTGTGCTCTCTCTCTGATCTGTTTTTTTCCTTCTATTGTCGCTTTATTTGGTATCTGTTTATATATATATTTTTGAATGTTTACGTTTCTTGTTTTTTCTTTGCATAATTGTTGTCTGATTCGAATGTTTCTTGTTCCTTTTTTTATTTTTCTTGTTTATTTGTAGTCGACGATGAGTTTTTTCTGCCTCCTTTGCATATTGGTTCTCTGATTACATTAGGAGACCTTCTCCTTTTTGTTTTTTTTGCCGTCGATGCTGAGTATTTTTCTTCTTTCTTTTTTTGCATAATGGTTCTTTGATTCACGAGTCAGTGATGGGTTTTATTATTATTATTATTTTTTTTTGCATAGTTGTTCTCTGATCCGAAGGTTTCCATTTCCTTTCTTTTTTTTTTCCAGTCGATGATTGAATATTTTTCTTCTTTCTTTTTTTGCATAATGGTTCTTTGATTCACGAGTCAATGATGGGTTTTATTTTGCTTTTTTTTTTTTGCATAGTTGTTCTCTGATCCGAAGGTTTCCATTTCTTTCCTTTTTTTTTCCAGTCGATGATTGAGTATTTTTTTTCTTTTTTTTTTGTGGCATAATAATTATTTCATTCACGAGTCATAAGTTTAGATCTCTGTGTTGTTTGAATGTTCACCATGATTCTGTGTTGTCTGTCCTGTTTTGCATACTTCTTATTTGTTTTATGTATGTCCTCCGATTTATTGCCATATTTGAAATCTCTGTTTCTATTTTTTTTTGCATAATTGTACTCTGAGATCTCTGTGTTCTTTGCATATGTTTACCATAATTTTGTGATGCTTGTCCTGTTTTTGCATAATCGTTGTTTGCCTACGTATATTCTCTGGTTCATGGCCATATCTGAGGTCTTTGTTTTTGTTTTCCAACATTGTACATGAAATTCAATGTTCATGAATGAATTTCAAAGACCTGAGGCCGGCCAAATTTCCCACTCTTTAACAACTGTTTATTTATGAATGCATTGGTCTGTTGACATCTGCTTTGTAATAAATGTTCTTCTGCATACACTGTTGAGTTGACATTTGCTTTAAAAAAAATGATGATTGCTCTTCATAAATGCTGAAATTGTCAATGGGATTTGACATTATTCAATATCCCTTCTTCTACCATTGGAATGTTGGTTGGGTGCAATAAGTGCACCAACCAACATTGAAGACTACTCTCCACTTTCATTCTTTATATACATGTATCATTTTTACGTTGGTTCTTCAGGCAGCTCCATCTTGTTCTTCTCTTCCTCTACATACAATTAGGTTAGTCTCTTCTCTCTCCCTCCCTTCTTCTTAACTACTTCTTTGTACGTGGTCTTTGACATAATACTAATGCACTTCTCTCTTGCAACAGGGGCGGACTCCTTCCCCAAGGAAACTAGTTCTTGCCTCATACTTTGCTTCCCCATCTCCTCCTAGTAAGGTTAGTGTCCTTGTTCTGTATGTACTAAAAATTTGATAATTAGGTTCTAATCTTCATCGTTTTTTGTTTTCAGGATTTGGAAAACATACTTTCATCGACCTTACTTCGAGGTTCGTTTTTTTCTTAAAGATCAAATGATCCTTGTGTAATTTATTTATGTTGCACATTTTCTTTGTTCATGTATATGGATTGAACCTTGTTTTTTTTTTTATTATGGTTGTATTTATTTCATAGACTTTTTCATTCATAATCTATGTGGAGCATTGTATATTAAACATTGGTTCAAAGTTAGCTAAATTTTAACACAAATTTTATAACTTTAACAAATAACACAAATTTTAATATATGTTTGCTTATTCTCAATTTTAACACAATCTTTAACACAAATTTTAAATTTTTGTAAGGATCGTTTTAATTATTCCGTGAAAGCATGGAATTAGTCATTACCGAATGAGATTTAGGAGTTATAGTTAAATATAAAATAAAATAAAAGAGTTTGGTTTAGAAATAACAATTTAGAAAAGAAATAGATATTAGAAAAGAAATAAAATCTGTTTTAGAAAAGAAATAAAATATATTTTAGAAAAGAAATAGAGATTAATGAAGAAATATTTACGTGGCACATACTTTTGAAAAAACCAGATTTCGAATAACATATTTTTTTTTTTCAGAAAAACAGACTTTAGTAAACAAGTTGCACTAAAAAAAAGTTATTTAGTTACCCAGTTGAACTCTAAAGATATCAAAGTTATCTTGCAAAAGGAAAAAAGGTTTTTCGAAATGCACATTATTAAAAATAGTCAGTTGGACAAGGTTTTTATATTTTGGCCTAACAAGAATGTAAATCGTCATATTTTATTCTTCAAAAATGTTTCGTTATAATAAAGAAGAACTATAATAATTCGAACGAGTTTTTCAGATTATTACTCAAGGGACGAGAGAGAATTAATGAGTTATTTTATTTTAACAAAGATTATACATATTTTTAAACACAATATTTAACACAAATTAACATAATGATTTTAACACAATCTTGAACACAAAATAAAAATTTGGAAAAACAAGGTTTCAAATCATAATTCTATTTTTATTTTTTATTTCAAATCATTATACTTTTTAGAATCTTAACTAAAACTGATTTTTCCCAATTTGTTTTAACAAATGTTATACTTTCCTGTTCAACCCTTAAATAGAACTATTTTTTAAAATCCTAAATCGAAAGAGTGTATTTTCGTTTTTAATATTCTTTAATAAATCCATAAACAATTTGTTTATACAATTTCAACCTTTCTTTAAGCAATTACAATCAAAATTTGAACACTTACCCTAACGCTCTTTTTGAACGTATCTTTATGTTTTTACTATATATATTTTTATACGAAACCCCGGACCCCAAAGTTATGTTGTTTTCCTTTTTAACAAATCCTTTTCAACTTTTAATAACAAATCCATGATCGTAAGTTCCTTTTGGCCTCCTGATTTATTTATTACTTTTTTCCATTTTTCCTGTTTGAGTTAAACGATACCTTCGTCCATGATGACCTTTTTTTTTCCCTTTGTCTCCTAGTGTAATTATGGATCCCGATGAACTAGATCCCCATGAACTAGTGGCCATATTGGCAGCCTTCACCACAGCTCAAACTCAAATTCTCCTACTATTAGATCTATATATTAACGATCGTAGGAGAATAGAACACGAATCACCCTACATCCAACATCACATTAGGCAACTAGCATTCTTCAGACTTATACACGAGTTTGACTTACGTTGTCGAGAGAGTACAAGGATGGACAGAAGATGTTTTTCCATACTGTGCACCTTATTAAGAACAGTTGCCGGCTTATCCGGTACGGATGTCGTAGATGTAGAGGAGATGGTTGCCATGTTCTTACACATCATAGCCCACGACGTTAAGAACCGAGTAGTTCGTACGCAGTTCGCTAGGTCTGAGGAGACAGTTTCTAGGCATTTCAACACCGTCCTTCATGGGGTGTTACGACTACATGAAGTTCTATTGAAAAAACCTGAGCCAGTCACGACCTCTTGTACGGATCCTAGGTGGAAATGGTTTCAGGTATAGATCATAACTCATCCAACTTTATCTGAGTCTAGACTCACTTCTAGGGTTAGAAACGTGAACCAATATTGCCTCTACTATGTCGACGCAGAATTGCCTTGGTGCGTTAGATGGAACATACATCAAGGTCAATGTTAGTGTCCTCGATCGTCCGAGGTATAGAACAAGGAAAGGTGAAATTGCCACGAACGTGTTTGCTGTCTGTGATACAAACGGAGATTTCACATTCGTCTTACCAGGGTGGGAAGGGTCTGCCGCTGATTCCCGGGTGCTTAGAGATGCAATATCACGACCGAACGGACTCAAAGTTCCGAAGGGTAAATAATCATATATTTTTTTCCTTTCACCATACAACCCTTAGGAAGATGTACTGAGCCGCTATAACATTCCACAGGATATTATTATCTGTGCGATGCTGGGTACCCTAATGTAGAGGGTTTCCTAGCACTATATAGAGGGGAACGTTATCACCTCTCTGAATGGCGTGGTGCGGGGAATGCACCCACTAGTCCAAAGGAATTCTTCAACATGAAGCATTCATCTGCAACGAATGTGATTGAGAGGGCGTTCGGTTTGCTAAAAGGAAGGTGGGCTATCCTCCGAGCGAAATCGTACTATCCAGTTCGAATTCAAGGACGGACCATCGCAGCGTGCTGCTTACTTCACAATCTTATCAACAGGGAGATGGGTGAGCGTGAAATTCCCGATGAACTGGATGAGGTGGATTCTGCATCGGCTACAACTGATGGTGAGAATATTAATTTCATTGAGACTTCAGACGAATGGAGCCGGTGGAGGGATGAGTTGGCAAAACAGATGTTTTCGGAATGAGAGTTACGTCATAGCTAATGGATTAACATTGCTTTATAGATTTTATGAATTGCTTCTTCTAGTTCTAGTATTCAGAATCGCTAGTTGTATTGACTGTTTACATTCCAATCGTTAATGTAATTGTTTATCTTGGTTAATGCAATTTTCATTCATGAATCTATGTACATGATTTTTATTACGTTATAGTTTAACATTTCCACAATGTATGTATTCACATAGCAGAATGACCAGTTCGTCTAGAGCTCCAAGACACACGTGGACGAATAACGAGGACGCGAAGCTTGTGGAGTCCCTCGTGTCCTTAGTTCATGTGGGCGGTTGGAGGTCTGATAATGGGACGTTCAGATCTGGGTATCAAGCGCAACTGGAACACTTGATGAGGGAGAAACTGCCGGGACGGGACGTTCCAGCACAGAGCTGCATTGAATCCAGGGTTCGCAGCCTGAAGAAACAATATCAGGCTATTGTAGAGATGATGGGCCCTGGATGTAGTGGTTTTGGCTGGAACGAGGAATTTAAGTGCATCGAGGCGGAGAAAGAAACATTCGACCTGTGGGTGAAGGTAAGAACGTTTGATCGTGTTAACTACTCAAAATTTATTGCTTCCTAACATAAACTTTCGGGTGAATGCAGCATCATCCAATCGCAAAGGGCATGCTTAACAAGCCTTTCCCCCATTTTGAGGACCTGGCATATGTATTTGGGAAGGATAGAGCCACCGGGGGGGGGGGTGTCAGAGGTGATGGCAGAGATGGGGTCTAACGTACCAGATGATGCAGTAAACCTTAGTGGATCCCCGGACAACGACATCCCCATCCTGCCGTTCACCATGCCTAATGTGAACATGTCAGAGGATGAGCCTCAGGTGACGCCGAACAGTCAAACTTACGCAACTGGAAATTCGTCACGTGGTAGTAAGAGAAAGAGATCTGGGTCTAACATGCACATCGCAGAAGTTGTGAATCGAAGAATGGCCTCGTTCACAGAACAACTTAAGTCCATTGCTGACTGGCCAGACAAAAAACGTGCCACAGAGACAGAGTTCCAGGATAAAATTGTCTCCCACTTGATGGAGGTACCCGACCTGGACAACCGAAAAAGGGTGAAGCTCATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAGCTTCTTCTCCATTCCTGCTCCTCTGAAGTTGGAGTATTGTGAATACATCTTGGACAAACACAGTTGA

mRNA sequence

ATGTTGCATGTTGGATTCGATGGGTTAGGACTTCGGGGAATGCGTGTCGACGATGAGTTTTTTCTGCCTCCTTTGCATATTGGTTCTCTGATTACATTAGGAGACCTTCTCCTTTTTGGGCGGACTCCTTCCCCAAGGAAACTAGTTCTTGCCTCATACTTTGCTTCCCCATCTCCTCCTAGTAAGGTTAGTGTCCTTGTTCTAATGACCAGTTCGTCTAGAGCTCCAAGACACACGTGGACGAATAACGAGGACGCGAAGCTTGTGGAGTCCCTCGTGTCCTTAGTTCATGTGGGCGGTTGGAGGTCTGATAATGGGACGTTCAGATCTGGGTATCAAGCGCAACTGGAACACTTGATGAGGGAGAAACTGCCGGGACGGGACGTTCCAGCACAGAGCTGCATTGAATCCAGGGTTCGCAGCCTGAAGAAACAATATCAGGCTATTGTAGAGATGATGGGCCCTGGATTAAACCTTAGTGGATCCCCGGACAACGACATCCCCATCCTGCCGTTCACCATGCCTAATGTGAACATGTCAGAGGATGAGCCTCAGGTGACGCCGAACAGTCAAACTTACGCAACTGGAAATTCGTCACGTGGTAGTAAGAGAAAGAGATCTGGGTCTAACATGCACATCGCAGAAGTTGTGAATCGAAGAATGGCCTCGTTCACAGAACAACTTAAGTCCATTGCTGACTGGCCAGACAAAAAACGTGCCACAGAGACAGAGTTCCAGGATAAAATTGTCTCCCACTTGATGGAGGTACCCGACCTGGACAACCGAAAAAGGGTGAAGCTCATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAGCTTCTTCTCCATTCCTGCTCCTCTGAAGTTGGAGTATTGTGAATACATCTTGGACAAACACAGTTGA

Coding sequence (CDS)

ATGTTGCATGTTGGATTCGATGGGTTAGGACTTCGGGGAATGCGTGTCGACGATGAGTTTTTTCTGCCTCCTTTGCATATTGGTTCTCTGATTACATTAGGAGACCTTCTCCTTTTTGGGCGGACTCCTTCCCCAAGGAAACTAGTTCTTGCCTCATACTTTGCTTCCCCATCTCCTCCTAGTAAGGTTAGTGTCCTTGTTCTAATGACCAGTTCGTCTAGAGCTCCAAGACACACGTGGACGAATAACGAGGACGCGAAGCTTGTGGAGTCCCTCGTGTCCTTAGTTCATGTGGGCGGTTGGAGGTCTGATAATGGGACGTTCAGATCTGGGTATCAAGCGCAACTGGAACACTTGATGAGGGAGAAACTGCCGGGACGGGACGTTCCAGCACAGAGCTGCATTGAATCCAGGGTTCGCAGCCTGAAGAAACAATATCAGGCTATTGTAGAGATGATGGGCCCTGGATTAAACCTTAGTGGATCCCCGGACAACGACATCCCCATCCTGCCGTTCACCATGCCTAATGTGAACATGTCAGAGGATGAGCCTCAGGTGACGCCGAACAGTCAAACTTACGCAACTGGAAATTCGTCACGTGGTAGTAAGAGAAAGAGATCTGGGTCTAACATGCACATCGCAGAAGTTGTGAATCGAAGAATGGCCTCGTTCACAGAACAACTTAAGTCCATTGCTGACTGGCCAGACAAAAAACGTGCCACAGAGACAGAGTTCCAGGATAAAATTGTCTCCCACTTGATGGAGGTACCCGACCTGGACAACCGAAAAAGGGTGAAGCTCATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAGCTTCTTCTCCATTCCTGCTCCTCTGAAGTTGGAGTATTGTGAATACATCTTGGACAAACACAGTTGA

Protein sequence

MLHVGFDGLGLRGMRVDDEFFLPPLHIGSLITLGDLLLFGRTPSPRKLVLASYFASPSPPSKVSVLVLMTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRSLKKQYQAIVEMMGPGLNLSGSPDNDIPILPFTMPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGSNMHIAEVVNRRMASFTEQLKSIADWPDKKRATETEFQDKIVSHLMEVPDLDNRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYILDKHS

Homology

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BLAST of Spg017235 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 6.3e-40
Identity = 115/304 (37.83%), Postives = 141/304 (46.38%), Query Frame = 0


Query: 69  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRD 128
           M S SRAP+HTWT  E+ K VE LV LV  GGWRSDNGTF+ GY AQL+ +M EKLPG +
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 129 VPAQSCIESRVRSLKKQYQAIVEMMGP--------------------------------- 188
           +   S I+  V+SLKK Y AI EM GP                                 
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120

Query: 189 --------------------------------GLNLSG----------SPDNDIPILPFT 248
                                           G N+S           S D DIP +   
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTM--Y 180

Query: 249 MPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGSNMHIAEVVNRRMASFTEQLKSIAD 298
              V+MS DE       Q     N S  SKRKR        EV+   M    EQLK+IAD
Sbjct: 181 SQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIAD 240

[Close]

BLAST of Spg017235 vs. NCBI nr
Match: KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 170.6 bits (431), Expect = 2.0e-38
Identity = 103/262 (39.31%), Postives = 137/262 (52.29%), Query Frame = 0


Query: 69  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRD 128
           M SSSRA +H WT  E+AKLVE LV LV  GGWRSDNGTFR GY  QL+ +M EKLP  +
Sbjct: 1   MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTN 60

Query: 129 VPAQSCIESRVRSLKK--------QYQAIVEMMG--------------PGLNLSGSPDND 188
           +     I+ R     K         Y  +  + G               G N+S   ++ 
Sbjct: 61  IQGSPTIDCRSHPAAKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDG 120

Query: 189 IP--------ILPFTMPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGSNMHIAEVVN 248
           +P        IL      V+MS DE       Q     N S GSKRKR   +  + EV++
Sbjct: 121 VPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVIS 180

Query: 249 RRMASFTEQLKSIADWPDKKRATETEFQDKIVSHLMEVPDLDNRKRVKLMDILFNNMKAT 301
                  +QLK+I DWP +KRATE E + ++V  L ++P L ++ R KLM ILF +++A 
Sbjct: 181 SATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAI 240

[Close]

BLAST of Spg017235 vs. NCBI nr
Match: KAA0047233.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 147.5 bits (371), Expect = 1.8e-31
Identity = 97/301 (32.23%), Postives = 137/301 (45.51%), Query Frame = 0


Query: 69  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRD 128
           MTSSSR P+HTWT  E+A LVE LV LV+ GGWRSDNGTFR GY  QL  +M  K+PG +
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60

Query: 129 VPAQSCIESRVRSLKKQYQAIVEMMGPGLNLSGSPDN----------------------- 188
           + A S I+SR++ +K+ + A+ EM GP  +  G  D+                       
Sbjct: 61  IHA-STIDSRIKLMKRMFHALAEMRGPICSGFGWNDDKNASSLRKKSLTIGVIRRRKTSL 120

Query: 189 ----------------------------------------------DIPILPFTMPNVNM 248
                                                         D   LP   P +NM
Sbjct: 121 ISLVHYDELSYVFGKDRATGGRAESFANIGSNDPVGYDAFAADVVPDTDFLPMYSPGLNM 180

Query: 249 SEDEPQVTPNSQTYATGNSSRGSKRKRSGSNMHIAEVVNRRMASFTEQLKSIADWPDKKR 301
           S D+   T  ++     N S GSKRKR G      ++V   +    EQL  IA+WP  +R
Sbjct: 181 SPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRIAIEYGNEQLHRIAEWPILQR 240

[Close]

BLAST of Spg017235 vs. NCBI nr
Match: KAA0059630.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08162.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 143.7 bits (361), Expect = 2.6e-30
Identity = 84/229 (36.68%), Postives = 123/229 (53.71%), Query Frame = 0


Query: 69  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRD 128
           M++S+RAPRH WT  E+  LVE L+ LV +GGW+SDNGTFR GY AQL  +M EKLPG  
Sbjct: 1   MSTSNRAPRHVWTKEEEGTLVEHLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 129 VPAQSCIESRVRSLKKQYQAIVEMMGPGLNLSGSPDNDIPILPFTMPNVNMSEDEPQVTP 188
           V A + I+ R+++LK+ +QAI EM GP  +  G  D +  I+            E ++  
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSDFGWNDKEKCIIA-----------EKELFD 120

Query: 189 NSQTYATGNSSRGSKRKRSGSNMHIAEVVNRRMASFTEQLKSIADWPDKKRATETEFQDK 248
           N     TG+S  GSKRKR        E ++  +    +QL+ IA+WP +  A +   + +
Sbjct: 121 NWVRVRTGSS--GSKRKRGSQRDFDVEAIHLALDQTNKQLRQIAEWPARNLANDNHVRTE 180

Query: 249 IVSHLMEVPDLDNRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYIL 298
               L E+P+L +  R  L   L + M     F  +P   +  +C  +L
Sbjct: 181 FFRILCEMPELTSLDRALLQRHLLSRMDDFRGFVLMPEDEREGFCRVLL 216

[Close]

BLAST of Spg017235 vs. NCBI nr
Match: KAA0041444.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24318.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.9 bits (359), Expect = 4.5e-30
Identity = 92/272 (33.82%), Postives = 133/272 (48.90%), Query Frame = 0


Query: 69  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRD 128
           MTSS R P+H+WT  E+A LVE LV LV+ GGWR DNGTFR GY  QLE +M  K+   +
Sbjct: 55  MTSSLRLPKHSWTKEEEAGLVECLVELVNAGGWRFDNGTFRPGYLNQLERMMTFKILDCN 114

Query: 129 VPAQSCIESRVRSLKKQYQAIVEMMGP-------------------------------GL 188
           + A S  +SR++ +K+ + A+ EM GP                               G 
Sbjct: 115 IHA-SPNDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVAEKEVFNDWIKSFADVGS 174

Query: 189 N---------LSGSPDNDIPILPFTMPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSG 248
           N            +PD D P  P     +NMS D+   T  +      N S GSKRKR+G
Sbjct: 175 NDPAGYDAFLADAAPDMDFP--PMYNQGLNMSSDDLMGTRTAWVREHRNVSSGSKRKRAG 234

Query: 249 SNMHIAEVVNRRMASFTEQLKSIADWPDKKRATETEFQDKIVSHLMEVPDLDNRKRVKLM 301
            +    +++   +    EQL  IA+WP  +R   +E + ++V  L  +P+L    R +LM
Sbjct: 235 HSADSGDIIRTLIEYENEQLNHIAEWPALQRQDASETRQEVVRQLEAIPELTLMDRCRLM 294

[Close]

BLAST of Spg017235 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.0e-40
Identity = 115/304 (37.83%), Postives = 141/304 (46.38%), Query Frame = 0


Query: 69  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRD 128
           M S SRAP+HTWT  E+ K VE LV LV  GGWRSDNGTF+ GY AQL+ +M EKLPG +
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 129 VPAQSCIESRVRSLKKQYQAIVEMMGP--------------------------------- 188
           +   S I+  V+SLKK Y AI EM GP                                 
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120

Query: 189 --------------------------------GLNLSG----------SPDNDIPILPFT 248
                                           G N+S           S D DIP +   
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTM--Y 180

Query: 249 MPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGSNMHIAEVVNRRMASFTEQLKSIAD 298
              V+MS DE       Q     N S  SKRKR        EV+   M    EQLK+IAD
Sbjct: 181 SQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIAD 240

[Close]

BLAST of Spg017235 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.0e-40
Identity = 115/304 (37.83%), Postives = 141/304 (46.38%), Query Frame = 0


Query: 69  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRD 128
           M S SRAP+HTWT  E+ K VE LV LV  GGWRSDNGTF+ GY AQL+ +M EKLPG +
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 129 VPAQSCIESRVRSLKKQYQAIVEMMGP--------------------------------- 188
           +   S I+  V+SLKK Y AI EM GP                                 
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120

Query: 189 --------------------------------GLNLSG----------SPDNDIPILPFT 248
                                           G N+S           S D DIP +   
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTM--Y 180

Query: 249 MPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGSNMHIAEVVNRRMASFTEQLKSIAD 298
              V+MS DE       Q     N S  SKRKR        EV+   M    EQLK+IAD
Sbjct: 181 SQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIAD 240

[Close]

BLAST of Spg017235 vs. ExPASy TrEMBL
Match: A0A5D3BZU3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00280 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 9.8e-39
Identity = 103/262 (39.31%), Postives = 137/262 (52.29%), Query Frame = 0


Query: 69  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRD 128
           M SSSRA +H WT  E+AKLVE LV LV  GGWRSDNGTFR GY  QL+ +M EKLP  +
Sbjct: 1   MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTN 60

Query: 129 VPAQSCIESRVRSLKK--------QYQAIVEMMG--------------PGLNLSGSPDND 188
           +     I+ R     K         Y  +  + G               G N+S   ++ 
Sbjct: 61  IQGSPTIDCRSHPAAKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDG 120

Query: 189 IP--------ILPFTMPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGSNMHIAEVVN 248
           +P        IL      V+MS DE       Q     N S GSKRKR   +  + EV++
Sbjct: 121 VPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVIS 180

Query: 249 RRMASFTEQLKSIADWPDKKRATETEFQDKIVSHLMEVPDLDNRKRVKLMDILFNNMKAT 301
                  +QLK+I DWP +KRATE E + ++V  L ++P L ++ R KLM ILF +++A 
Sbjct: 181 SATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAI 240

[Close]

BLAST of Spg017235 vs. ExPASy TrEMBL
Match: A0A5A7TUJ7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G00240 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 8.9e-32
Identity = 97/301 (32.23%), Postives = 137/301 (45.51%), Query Frame = 0


Query: 69  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRD 128
           MTSSSR P+HTWT  E+A LVE LV LV+ GGWRSDNGTFR GY  QL  +M  K+PG +
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60

Query: 129 VPAQSCIESRVRSLKKQYQAIVEMMGPGLNLSGSPDN----------------------- 188
           + A S I+SR++ +K+ + A+ EM GP  +  G  D+                       
Sbjct: 61  IHA-STIDSRIKLMKRMFHALAEMRGPICSGFGWNDDKNASSLRKKSLTIGVIRRRKTSL 120

Query: 189 ----------------------------------------------DIPILPFTMPNVNM 248
                                                         D   LP   P +NM
Sbjct: 121 ISLVHYDELSYVFGKDRATGGRAESFANIGSNDPVGYDAFAADVVPDTDFLPMYSPGLNM 180

Query: 249 SEDEPQVTPNSQTYATGNSSRGSKRKRSGSNMHIAEVVNRRMASFTEQLKSIADWPDKKR 301
           S D+   T  ++     N S GSKRKR G      ++V   +    EQL  IA+WP  +R
Sbjct: 181 SPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRIAIEYGNEQLHRIAEWPILQR 240

[Close]

BLAST of Spg017235 vs. ExPASy TrEMBL
Match: A0A5A7UWW9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00480 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-30
Identity = 84/229 (36.68%), Postives = 123/229 (53.71%), Query Frame = 0


Query: 69  MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKLPGRD 128
           M++S+RAPRH WT  E+  LVE L+ LV +GGW+SDNGTFR GY AQL  +M EKLPG  
Sbjct: 1   MSTSNRAPRHVWTKEEEGTLVEHLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 129 VPAQSCIESRVRSLKKQYQAIVEMMGPGLNLSGSPDNDIPILPFTMPNVNMSEDEPQVTP 188
           V A + I+ R+++LK+ +QAI EM GP  +  G  D +  I+            E ++  
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSDFGWNDKEKCIIA-----------EKELFD 120

Query: 189 NSQTYATGNSSRGSKRKRSGSNMHIAEVVNRRMASFTEQLKSIADWPDKKRATETEFQDK 248
           N     TG+S  GSKRKR        E ++  +    +QL+ IA+WP +  A +   + +
Sbjct: 121 NWVRVRTGSS--GSKRKRGSQRDFDVEAIHLALDQTNKQLRQIAEWPARNLANDNHVRTE 180

Query: 249 IVSHLMEVPDLDNRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYIL 298
               L E+P+L +  R  L   L + M     F  +P   +  +C  +L
Sbjct: 181 FFRILCEMPELTSLDRALLQRHLLSRMDDFRGFVLMPEDEREGFCRVLL 216

The following BLAST results are available for this feature:

BLAST of Spg017235 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441954.1	6.3e-40	37.83	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
KAA0031678.1	2.0e-38	39.31	retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p...	[more]
KAA0047233.1	1.8e-31	32.23	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0059630.1	2.6e-30	36.68	retrotransposon protein [Cucumis melo var. makuwa] >TYK08162.1 retrotransposon p...	[more]
KAA0041444.1	4.5e-30	33.82	retrotransposon protein [Cucumis melo var. makuwa] >TYK24318.1 retrotransposon p...	[more]

BLAST of Spg017235 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg017235 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0H7	3.0e-40	37.83	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	3.0e-40	37.83	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
A0A5D3BZU3	9.8e-39	39.31	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TUJ7	8.9e-32	32.23	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UWW9	1.3e-30	36.68	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Spg017235 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..210
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..204
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 71..156
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 181..296 coord: 71..156
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 181..296

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg017235.1	Spg017235.1	mRNA