Spg017218 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg017218
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	U3 small nucleolar RNA-associated protein 21 homolog
Location	scaffold4: 39732705 .. 39733730 (+)
RNA-Seq Expression	Spg017218
Synteny	Spg017218

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTATATTAAACTAATAGGTAAACTAGCTAAAAATTAGTAAAAACATTGTTGGTATTATACATAATCTAAAAACTTTTCCATACAAAAATCATACTAAACAAACATAGTTATTCCGATGATCTAGATTAAAAAAAAAAAAAAAAACAAACCACCCTAAATTTCAATACCTAAACAACATTTGATAAAAGGGCATTTTGGTACAAAATATGACATTATTGCTTAAACCTCCGTTGTGGTCGGCGGCCACAAAACCCTGAAAACGCTAAGCCGCGCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTTGCCAAAAGGGAACACAGCTGAAGAAAAGCCTAAACGTTTCTCAGTTCCTCTTCCTGTTACACTCTGTGCGCTTCTCAAGCTTCAGGAATCCTCGGGGAGTGACTGAGAAAATGGGAATATTTGAACCTTATAGAGCAATTGGTTACATAACAACCAGCGTCCCCTTCTCGGTGCAGAGACTCGGAACCGAAACCTTCGTCACTGTTAGCGTTGGCAAAGCTTTTCAAGTTTACAATGTAAGATCATTGTTTGATTGTACTTCTTTCCCTTGTGAAATTTCCATTATGGCGACCCTTTCTCCCCGTTAATTGCTCGAACCGTATAAGTTTCCAATCTTACTGTTAGTATTGTTTTGTAATTTTCACTTCAGTGCTTAATCGTTGTTATGTTCTTTTTCTTTTTCTTATTCCAGTGCGCGAAGTTGAACTTGGTGCTTGTTGGTATGTAGTTTTTTTTTTTAGTTTCAGTTTCTATCTGGATATATGCCCATATTGTTTGTCTTTAGAAATTTTCTTATATGTGGGGTGTTTCTATAATTTTCTTTTTGCTTTACCTATTCATGTTGATGCTTGATGTTAAGGCCCTCAATTGCCAAAGAAGATTCGAGCTCTTGCTTCCTACCGTGAGTACACGTTTGCTGCTTATGGGTCTGACATTGCAGTTTTCAAGCGTGCCCATCAGGTTTGCTCGTTTGGAATATATGTATAA

mRNA sequence

ATGGGAATATTTGAACCTTATAGAGCAATTGGTTACATAACAACCAGCGTCCCCTTCTCGGTGCAGAGACTCGGAACCGAAACCTTCGTCACTGTTAGCGTTGGCAAAGCTTTTCAAGTTTACAATTGCGCGAAGTTGAACTTGGTGCTTGTTGGCCCTCAATTGCCAAAGAAGATTCGAGCTCTTGCTTCCTACCGTGAGTACACGTTTGCTGCTTATGGGTCTGACATTGCAGTTTTCAAGCGTGCCCATCAGGTTTGCTCGTTTGGAATATATGTATAA

Coding sequence (CDS)

ATGGGAATATTTGAACCTTATAGAGCAATTGGTTACATAACAACCAGCGTCCCCTTCTCGGTGCAGAGACTCGGAACCGAAACCTTCGTCACTGTTAGCGTTGGCAAAGCTTTTCAAGTTTACAATTGCGCGAAGTTGAACTTGGTGCTTGTTGGCCCTCAATTGCCAAAGAAGATTCGAGCTCTTGCTTCCTACCGTGAGTACACGTTTGCTGCTTATGGGTCTGACATTGCAGTTTTCAAGCGTGCCCATCAGGTTTGCTCGTTTGGAATATATGTATAA

Protein sequence

MGIFEPYRAIGYITTSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIRALASYREYTFAAYGSDIAVFKRAHQVCSFGIYV

Homology

[Close]

BLAST of Spg017218 vs. NCBI nr
Match: XP_004152858.1 (WD repeat-containing protein 36 [Cucumis sativus] >KGN61205.1 hypothetical protein Csa_006788 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 2.8e-39
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MGIFEPYRAIGYITTSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60
          MGIFEPYRAIGYIT SVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR
Sbjct: 1  MGIFEPYRAIGYITNSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60

Query: 61 ALASYREYTFAAYGSDIAVFKRAHQVCSF 90
          ALASYREYTFAAYGSDIAVFKRAHQV ++
Sbjct: 61 ALASYREYTFAAYGSDIAVFKRAHQVANW 89

[Close]

BLAST of Spg017218 vs. NCBI nr
Match: XP_022149908.1 (U3 small nucleolar RNA-associated protein 21 homolog [Momordica charantia])

HSP 1 Score: 171.8 bits (434), Expect = 2.8e-39
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MGIFEPYRAIGYITTSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60
          MGIFEPYRAIGYIT SVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR
Sbjct: 1  MGIFEPYRAIGYITNSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60

Query: 61 ALASYREYTFAAYGSDIAVFKRAHQVCSF 90
          ALASYREYTFAAYGSDIAVFKRAHQV ++
Sbjct: 61 ALASYREYTFAAYGSDIAVFKRAHQVANW 89

[Close]

BLAST of Spg017218 vs. NCBI nr
Match: KAG7029868.1 (hypothetical protein SDJN02_08211 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171.8 bits (434), Expect = 2.8e-39
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MGIFEPYRAIGYITTSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60
          MGIFEPYRAIGYIT SVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR
Sbjct: 1  MGIFEPYRAIGYITNSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60

Query: 61 ALASYREYTFAAYGSDIAVFKRAHQVCSF 90
          ALASYREYTFAAYGSDIAVFKRAHQV ++
Sbjct: 61 ALASYREYTFAAYGSDIAVFKRAHQVANW 89

[Close]

BLAST of Spg017218 vs. NCBI nr
Match: XP_038890988.1 (U3 small nucleolar RNA-associated protein 21 homolog [Benincasa hispida])

HSP 1 Score: 171.8 bits (434), Expect = 2.8e-39
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MGIFEPYRAIGYITTSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60
          MGIFEPYRAIGYIT SVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR
Sbjct: 1  MGIFEPYRAIGYITNSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60

Query: 61 ALASYREYTFAAYGSDIAVFKRAHQVCSF 90
          ALASYREYTFAAYGSDIAVFKRAHQV ++
Sbjct: 61 ALASYREYTFAAYGSDIAVFKRAHQVANW 89

[Close]

BLAST of Spg017218 vs. NCBI nr
Match: KAG6598913.1 (hypothetical protein SDJN03_08691, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 171.8 bits (434), Expect = 2.8e-39
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MGIFEPYRAIGYITTSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60
          MGIFEPYRAIGYIT SVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR
Sbjct: 1  MGIFEPYRAIGYITNSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60

Query: 61 ALASYREYTFAAYGSDIAVFKRAHQVCSF 90
          ALASYREYTFAAYGSDIAVFKRAHQV ++
Sbjct: 61 ALASYREYTFAAYGSDIAVFKRAHQVANW 89

[Close]

BLAST of Spg017218 vs. ExPASy Swiss-Prot
Match: O14053 (U3 small nucleolar RNA-associated protein 21 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC1672.07 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-15
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 3   IFEPYRAIGYITTSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIRAL 62
           I+ P+R+IG+++ +VPF ++  GT   VT SVG  FQ Y+C KLNL+ VG QL K+I  L
Sbjct: 23  IYAPFRSIGHVSNAVPFDIEARGTHFLVTTSVGNTFQTYDCEKLNLLFVGKQLDKEITCL 82

Query: 63  ASYREYTFAAYGSDIAVFKR 83
            S++++   A GS I  +KR
Sbjct: 83  KSFKDFMLVAAGSKIFAYKR 102

[Close]

BLAST of Spg017218 vs. ExPASy Swiss-Prot
Match: Q06078 (U3 small nucleolar RNA-associated protein 21 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UTP21 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-10
Identity = 30/81 (37.04%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 3   IFEPYRAIGYITTSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVG-PQLPKKIRA 62
           IF P+R IG ++  VPF+   LG+  ++   VGK FQ+Y+   L+L+ V   + P  I A
Sbjct: 23  IFSPFRIIGNVSNGVPFATGTLGSTFYIVTCVGKTFQIYDANTLHLLFVSEKETPSSIVA 82

Query: 63  LASYREYTFAAYGSDIAVFKR 83
           L+++  Y +AAY + + ++KR
Sbjct: 83  LSAHFHYVYAAYENKVGIYKR 103

[Close]

BLAST of Spg017218 vs. ExPASy TrEMBL
Match: A0A5D3CA77 (WD repeat-containing protein 36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00200 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.4e-39
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MGIFEPYRAIGYITTSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60
          MGIFEPYRAIGYIT SVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR
Sbjct: 1  MGIFEPYRAIGYITNSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60

Query: 61 ALASYREYTFAAYGSDIAVFKRAHQVCSF 90
          ALASYREYTFAAYGSDIAVFKRAHQV ++
Sbjct: 61 ALASYREYTFAAYGSDIAVFKRAHQVANW 89

[Close]

BLAST of Spg017218 vs. ExPASy TrEMBL
Match: A0A6J1K4Z0 (U3 small nucleolar RNA-associated protein 21 homolog OS=Cucurbita maxima OX=3661 GN=LOC111491730 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.4e-39
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MGIFEPYRAIGYITTSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60
          MGIFEPYRAIGYIT SVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR
Sbjct: 1  MGIFEPYRAIGYITNSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60

Query: 61 ALASYREYTFAAYGSDIAVFKRAHQVCSF 90
          ALASYREYTFAAYGSDIAVFKRAHQV ++
Sbjct: 61 ALASYREYTFAAYGSDIAVFKRAHQVANW 89

[Close]

BLAST of Spg017218 vs. ExPASy TrEMBL
Match: A0A0A0LGY1 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G070230 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.4e-39
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MGIFEPYRAIGYITTSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60
          MGIFEPYRAIGYIT SVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR
Sbjct: 1  MGIFEPYRAIGYITNSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60

Query: 61 ALASYREYTFAAYGSDIAVFKRAHQVCSF 90
          ALASYREYTFAAYGSDIAVFKRAHQV ++
Sbjct: 61 ALASYREYTFAAYGSDIAVFKRAHQVANW 89

[Close]

BLAST of Spg017218 vs. ExPASy TrEMBL
Match: A0A6J1D810 (U3 small nucleolar RNA-associated protein 21 homolog OS=Momordica charantia OX=3673 GN=LOC111018210 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.4e-39
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MGIFEPYRAIGYITTSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60
          MGIFEPYRAIGYIT SVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR
Sbjct: 1  MGIFEPYRAIGYITNSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60

Query: 61 ALASYREYTFAAYGSDIAVFKRAHQVCSF 90
          ALASYREYTFAAYGSDIAVFKRAHQV ++
Sbjct: 61 ALASYREYTFAAYGSDIAVFKRAHQVANW 89

[Close]

BLAST of Spg017218 vs. ExPASy TrEMBL
Match: A0A6J1EPQ3 (U3 small nucleolar RNA-associated protein 21 homolog OS=Cucurbita moschata OX=3662 GN=LOC111436253 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.4e-39
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MGIFEPYRAIGYITTSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60
          MGIFEPYRAIGYIT SVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR
Sbjct: 1  MGIFEPYRAIGYITNSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60

Query: 61 ALASYREYTFAAYGSDIAVFKRAHQVCSF 90
          ALASYREYTFAAYGSDIAVFKRAHQV ++
Sbjct: 61 ALASYREYTFAAYGSDIAVFKRAHQVANW 89

[Close]

BLAST of Spg017218 vs. TAIR 10
Match: AT4G04940.1 (transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 158.7 bits (400), Expect = 2.3e-39
Identity = 74/93 (79.57%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MGIFEPYRAIGYITTSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60
          MGIFEP+RAIGYIT++VPFSVQRLGTETFVTVSVGKAFQ+YNCAKLNLV++ PQLPKKIR
Sbjct: 1  MGIFEPFRAIGYITSTVPFSVQRLGTETFVTVSVGKAFQIYNCAKLNLVIISPQLPKKIR 60

Query: 61 ALASYREYTFAAYGSDIAVFKRAHQVCSFGIYV 94
          ALASYR+YTF A+G++IAVF+RAHQV ++  +V
Sbjct: 61 ALASYRDYTFVAFGNEIAVFRRAHQVATWSKHV 93

The following BLAST results are available for this feature:

BLAST of Spg017218 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152858.1	2.8e-39	95.51	WD repeat-containing protein 36 [Cucumis sativus] >KGN61205.1 hypothetical prote...	[more]
XP_022149908.1	2.8e-39	95.51	U3 small nucleolar RNA-associated protein 21 homolog [Momordica charantia]	[more]
KAG7029868.1	2.8e-39	95.51	hypothetical protein SDJN02_08211 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038890988.1	2.8e-39	95.51	U3 small nucleolar RNA-associated protein 21 homolog [Benincasa hispida]	[more]
KAG6598913.1	2.8e-39	95.51	hypothetical protein SDJN03_08691, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Spg017218 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O14053	1.3e-15	46.25	U3 small nucleolar RNA-associated protein 21 homolog OS=Schizosaccharomyces pomb...	[more]
Q06078	2.8e-10	37.04	U3 small nucleolar RNA-associated protein 21 OS=Saccharomyces cerevisiae (strain...	[more]

BLAST of Spg017218 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CA77	1.4e-39	95.51	WD repeat-containing protein 36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A6J1K4Z0	1.4e-39	95.51	U3 small nucleolar RNA-associated protein 21 homolog OS=Cucurbita maxima OX=3661...	[more]
A0A0A0LGY1	1.4e-39	95.51	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G...	[more]
A0A6J1D810	1.4e-39	95.51	U3 small nucleolar RNA-associated protein 21 homolog OS=Momordica charantia OX=3...	[more]
A0A6J1EPQ3	1.4e-39	95.51	U3 small nucleolar RNA-associated protein 21 homolog OS=Cucurbita moschata OX=36...	[more]

BLAST of Spg017218 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G04940.1	2.3e-39	79.57	transducin family protein / WD-40 repeat family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 13..92 e-value: 9.5E-17 score: 63.2
None	No IPR available	PANTHER	PTHR22840	WD REPEAT-CONTAINING PROTEIN 36	coord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg017218.1	Spg017218.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0034388	Pwp2p-containing subcomplex of 90S preribosome
cellular_component	GO:0032040	small-subunit processome
molecular_function	GO:0005515	protein binding