Spg017087 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg017087
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNA-binding protein
Location	scaffold4: 37525635 .. 37534207 (-)
RNA-Seq Expression	Spg017087
Synteny	Spg017087

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGTCCTTCTTCCTCGACTCCATCTGCAGCTTCTTCTTCATCAGGTGCCCAATTTACGTATTCAAACGGTTCTTACTTTCCTTTACCATTCCACCTCCAGCAGTCTGCCCCAGCAGCGCCAGCTCCCCAGTACCCCACTCCCTATGTCGCTGCTCCGGGTCCTTCGGCAGTTCCGCTTCCCGTCGCATCAGTTTATCCAGCTCCTACCCCGGCTCCGGCTGTATATACTCTCCCTCAGTACCAGCAGGTAAGCAAAATTTGCATATTATTTGAATTTGTTTTGTGGAATTGTTGTTTTGTTTTTTTTCTAGCTAGGGTTTGCGGGAAAATGTTATTCGACAAGACATTTATGATGGATTGGGGATTCTTTTAGTTCAATTTATGGCTTTGGTATGCTTGTAAATTTTTTGTTTTGTTTTGTTTTGTTTTTTTTCAAATTTTCCTGATTGTAAACAGGCCCAACAACTGTTTCAAAGGGATGCCCAAACGATAACACCAGAAGCTCTTGAGAGTGTTAAAGCTGCACTTGCGAGTAGTGAGATCGAGCATAAAGCGGAAACCAAAAAGAAAGCTATTCCTCGCAAAGCTGCCGGGCAATCGTGGGAGGACCCAACACTTGCTGAGTGGCCAGAAAGTATGTATTATCTACTGTCTTTGGTTTCATGTATTTCCAATCATTAGGCTTTATTTGGCGTGTATGAAATGCATGTTTCTCATTCGAGCTTTAGGAGTTAGTTAGAATTAACTCGGCATCCATTAATCGGGCTTTTTGTAAATTTAGCACACTATTTGTTGTTACCATGGGCTCCTGAAATACAAGAAGATTTTATTCGTTGATATCTAGTAGGTGGTTGGTGGACTTTTGTTGCTTGCCATGGTGTGAGTGCAAATTGTGCAAGCGAAGTTAGGAAATGGATACGGGCCTAACAACTAGCCTTGCTACCTCGATTGGTAAGCAAGATTTAGGGAGTAACAATCACCTAATTTACTAAACCCTTATAAAGGGTTGATATCCAATAATAGGGCTCTAAAGAAATGTAAAATGGCAACTAGGCTTGTTACCTCAATTGGTAAGCAAGATTTAGAGAGTAACAATCACCTAATTTCTTAGACCTTAAAAAGTGTTGATATCTAATAATAGGGCTCTCAAGAAACGTAAGGATGACAACTAACCTTGTCACCTCAATTGGTAAGCAAGATTTAGCGAGTAACAATCACCTAATTTATTAGACCCTTAGAAAGGTTGATATCTAATAATAGGGCTCTAAACTCGAAACTCATTTTTACTTAAGATGAGATTCAAGATTATTCAATTGTCATAAACAAAAATTTTCCTTAGCGTTTAAGATAGAGATAGCCATAGAATTAGCATTGTTTTAGCCTCAAAGCTAAAGGTATGTTGATCTCCTCAATTTCGTGAATGGGAAGTTGTCCCGTATTGATGTATTTTGACCTCCCACCATTTTGGCAGATCTTTGGGACCCATTCATCTTCAATGCAAATGGGCAAATCATATAACACTCCATGTCCTTATTCTAAGTTCTCAAGCATGTGGCTATTAATTTGGTGGGGGAAGATTACCAATTTCCTATGGGATGGGGGTGAACAAAGAAGAATGGACCACCTTGTCTATAATTTGTGAATAACTACATTTTTGTATAAGAAACTAAGGGCCTCTTAGGTAGGCAATCCGGATTCTGTTTTATGTTTTCAGATTCACTGAATTCAGTGAATATGCGTTTGGCAGACGTGTTTCTGAAAACTGTTTTCGGATTCTGTGATCCAAATAGTGGAAATTCTGAAAACAACTTTTTTTATGTTTTCGTTATATCCAGATTTTGAATTTCAAAATTTTAAATGCAGAATTAATTTAAAAAAGACAAAACTTTAATAAATATAGTATTTCATGTTATAAACTCAATTTATTTTTGCGAAGCTAAAATTTGTATAATATAATGTATTATAAATTATATGATATTGTAAAATAATAATAATAATAAATTTATAAAATATAACATTTTTATAAATTAATTGATAATATTTTATATTCAACTTAGTATTTAGTTGATAACTACAAATAATTTATTGTTTATAAATATATTATCAAACACATTTTGAACCATTATTTAAATTCAGATCCAATTTCTAAATTTGCTACCAAACGCATATCTGAAAACATGAAATACAACCCTGTTTTCATTGAATCCCTTGTTTTCAAATTCCTGTTTTCAGATCACCAACCAAACGAACCCTAAGCTTCTATCTCTCTCTTTTTTTTTTTCTTTGATAGGAAACAAAAACCATTTCATTGATGTATGAAGTAGATACAAAAAGGGTCGTATCAAGGATAATTACAAAAAACTTCTCCAATGAGATATAAGGGTAGGAAACTAAGCTTCTATCAAGAAAAATAAAATAATATACAAGGATGTACAAAAAACAACCCCACAAAAAGGAGTCCTAAAACTAACTTGGAAATCTCCTATCCAAAAGAATAAGGCCTATCTGTTAATTACAAAAAAGTGGAGTTACCAACACCTACGACGAAGTGTTTACGGTTAAATCTCATAATATCCAACCCTCATTCGCGGACCTCTCCCCACCCCTAAAAATACTACATTACTAATGGGTAGTAGAGGCCTTTGAATTGGCAACTTGAAAAGTAGAATTGAAGCTCTTTTGGCTAAGCATTTTGTCCTTTGAGGGTATGCAGGGGTTGAAGATTAATAGAGAAGTGCCAACTTTTGGGTTTGAATTGCGACATTGTTAAGTTGAATAGATAGGTTGCCTTGGTTAGGTGTGATATTGGGTCATTTCCTACATTTTATTTAGATCTCCCTTTGGGTCATTACCCTAGAAACAATTTGTTCCGAGATTCAATTGGGAGTAAGATTCGTAGGAGGCTTTCATTTGGGAAGAATAGCATCTTTTAGAAAGGAGGTAGACTCACTCTCATTTAGATTGTGTTGAGTGGTATCTCAAGCTACATGTCCCTTTTCAATCCTGTGTCTATAGATAAGCTTACTAGAGATTTCCTTTGGGAAGGGATTGAAGAAGGGAAAGGGTCGCATTTAGTTAGGTCGGAGGTGATGACAAAATTGGTTCATGAGGGGTGTTCGTGGGGGGGGGGGGGGGGTTGGATATAGGGAATTTAAGGGCCGGGAATGTTCCTAGCTAAATGACTTTGGCATTTCCATTAGAGAGTTATTGTGAGTAAACATGGGGCACTCCCTTGCAAATGGATTGGGTTGGGGGAGGGGTTGAAGGACTTCCAAAAACCCTTGAACGTGTATATTTTAGGGGCTTCCTTTCTTTTCTTAGTTTGTTCAATGTTCGATGGGTGATGGGAGAGAGACTTTTTTCTGGGAGGATAAGTGGTTGGTAGACCTTTTTGCTCTTTTTTCCCTCATTTGTATCATTTATCCTCGATGAAGAATCGTTAGGTGGTGGATGTGAGGCCAAACTCTCTGACCTTTCCTTCACTCGTTTTGGGGTTTCGACGTTCTTTGTCCAATAGGAAAACATCGGATGTTGTTGCCTCTTGTTGATTGGGGAGTTTTGGAGTCTCGGTCTGTTTGAAGGCTTTTCTTGCAAATCCTTCTTCCTTTGCTTGGTCAATCCCTCTCCTTGAGTGGTGTCTTTGCCTTGTTGTGGAAGGTGATTTTCGAAGAAGGTTGAATTTTTTGTGGTGTCTTTGCCTTGGTTGGGCTGCTATGTTGCATTGTTTGCAGGCGAGTGGCTGAGGACCATGATCATATCTTCTAGAGTTGTGACTTAGCCCATGTTGTTTGGATCTATTTCTTCGAGGAGCTTGGGCGGAGTTTGGCTAGACATAGGGATTGCAGAGAGATGATCGTGGAGTTTCTTCTCCACCCTCATAAGAAAGGAAAGTTTTTGTGGTAGGTTGGGGTGTGTGTTGTTTTGTGGGATTTGTAGGGGGAGAAATAATAGTCTTCAAAGGGCTTGAGTGGTCTTGGAGGGATGTTTGGGCTCACTAAAACGTTTTGTAATTATTCGTTAGGTTTTGTTTTGCTTGATTGAAGGCCCTTTCTCTTTAGTTTACTCCTCTTTTTGTGGGCACTTTTTTTTAATGTCCTTGTATTCTTTCATTTTTTTTTTCACGGGAAGTTTGGTTTTTCATCCAAAAAAAAAAAAAAAAGAAGCTAAGCCCAATGAGTTCTCCCCTATGATAATTGGTGATGGGAGAGGACGTCAAATTGCAACATGGACACACTCCAACACACCCAATTATCTCATTGAAAGTGAAAGACCCAATAGAAAATGAAGGTAATAAAATGGCCCACTACCCAATAGAAAATGAAGGTAATAGAATGGCCAGCTCAAAAAGATACCTAAGCTAAATATGTCAAAAATAAAAGAGCAATTGCACTTGTTTTCAAGTTTGTTTTGTAAACCTTTTTGGATAATGGATATTGTTGGTTGTCTAGCACTGTTTTAATGAATTGAATTGTTTTTTGATGTCGAACTTTAGATATCAAATTTACTTTTACATTATTAAATACTCAAAGTATTTGTGCATACACATATATAACATTTATTTTTTTGAAGGAAGAACTATTGTATCCTCAATGTATCATCTACCTTTTTAGAAATTGACGTTGCTGTGTTAGTGTCATACTGTACTAGTGTCACGTTTCATGTTTCTTAGGTAGTTACTGGCCTACCATATTCTTAGTCTTATATTTTTTCATTGTGATTTTGATGGATTTCCTTTTCCCGTCGACTTTTTAGAAATATTGATTACTATAGGATAGGGATGAATTTGGCTCCCTGAATGTCTTTTGGTTGTACTCACTCAAATTTCTTAGATATGTATTTTGTGCTATCATCTTTAGCTAGAAGGATCTCTTACTTTGGAAAAATGTCCATTGTTATTTGCAGATGACTACCGTCTATTTTGTGGTGATCTTGGCAATGAAGTGAATGATGACGTGCTCTCTAAAGCATTCTCACGTTTTCCTTCATTTAACATGGCTAGAGTAAGTTTATTTTGTCCAATATCTACACATTTCTTATTTTTATCAATTTTTGTTCTTGGCATTCTGCATGATGATTAGTTTCCTTGAAGTGTGCCGGCTTGTTTAAAAGGTGTTATGCATCTAGGTTACTCTTTTTTGTACATTTACGTATGGTTGTTATTATGGAAGCATTTGTCCTAGTGATATTCCTTAAATTTCATTCCATTTTTATGTTCTTTTGGTTTAGTCCTTTTCTTTTTGCTCCAAAAAACTTTTATAGTTATTTGTTTGGGTTTCTAAACGTTTAAATATTCTATTTTGATCCTCAAGTTTTCAAATGTTCAATTTCCGTGCCTAGAACTTTGCATAATAAACTAATTTAGTCATTGCTGTTATTTGTTTTTTTTTTTCTCCCTTTGTTAATCATTTAGAATTTGCTAACCTGCTGTGTGACTCCCAAATTTATCTACATAGACACTCAACAGATAACGGAATAAAAGATGTCATATCAAGTTTCTGTAAGTGATTTCTAGAAATTAATGGAAAATTAATGACCATGCTAAAATGATCTTCTTATGCAAAGCTGAAGGACTAACATTGAATCATTTGAAAGACCAAAATGAAAGAAGTATAAAACTTCGAGTAGTATAAATAGGATTTAAACCTATATTTTGTGTTCCTTCAATATTATTTATGAGATCAAGAGTTTTATTTAAGAAGGACGTGATCATCTGATTGGGACTTGTGCAGCTGGAACCTCTTTATGGAGCTTGTATCCCTTAGAATTTACCGAGTTCATGGACTAGCATGAGTTGTAACATGGTTGGGTCATTTAAGCTTGTCAGATACAGGTTAGCCCTCGAGCTTTTAAAAGTGGGTCTTCTTTTCCTTGGTAGTTTTGACTATCTTACTGCTTGTGGGGGGTACTAGGGAAGTCCCCTAGAATTTTTGGCACGACCACTATCCATGGAATTTTTCAACAGAGGGGCATGAAGATTATGGCAGCCCCCTATTACTAGCAATGTTTTGAGATATTTCTCTTTTGATATTTACTCGTGAATCTTGAAAGTAGGAACTGTTGTAGCAGTGTTTTAAAAGGCGCGCGCCCGGGTGCACCTAGGCACACCTAGGCGCAAGGCGCAACCTTAGCGTAGAAGCGAGGCGCAGTGAGGAAGGCGAGGCCAAGGCGCGCGCCTTCCTCGAAGCCCCCGAGGCGCGCGCCTTAGGAACCTCTGGGGCTTCACAATTTTATATATGTTTTAAATTTTTTTAAACATAAATACTTGTTATGAAGCTAATTTTAAATTTAGCTTCTGGGTCTTGGTCATTCGGAGTGTCAAATATCATATTCAAGCTTGTAAGCGAAGAAAGAATCCAAGAATACCACCTCTTATGTTGTACATACATGAGTGAATAAACAGATGAGCAAACAACAAGGAAGGCATATTAACAATACTAAACTCATTGTTTTTTGTGGAGTATTGACATTTGACTCTATGTTGGAAGACTAATATTTGAACCTTATTTATCTTTTATCTATTTTTCTTGGTTAAAAACTTCATTACTTGCCATGAAAGTGTTTTATATACATGTATATATTTTTGTAAATTTTTTTTCTATATAGTGCGCCTTACATAATAAAGCCCGCGCCTTTTTGTGCGCCTTGCGCCTAGGCCCCAGGAGGCCATTGCGCCTTAGTGCGCCTTGAGCCTTTTAAAACACTGTGTTGTAGTGATCGCTCCAGTGGTGATTGTATGGTCATGCCATGAAATACGATTATCTTCTCTCCCATGTTATATATGGTATTGGGTTATATCATGGAAGAGTTTCTTGCTTTGTATTATTATTTGGTCAATTATATTTTACCGGGTGAGCTCATAATTTAATTCTCACAAACATTTGGGGTTTTGAACTAGTCGAGTTCAAGTACATTGCCAAAGTGTTTAAAAGGATCCCCATGTATTCTCATTAAAAGAAAAAGGGTCCCCATGTTTTAATGTTTTTTGGAAGTAGCTTTGACCAATATATGCATCTTTTATAGGAAACAATTTCAATTCCGTAGCTTGGAAAATATACTAGTTGTGATGGCTTTGCGGATTGGCATAAGATATTTTGATAGTTTATTAATGGTTTATGTTTGTTATTGATTATACTTTTCTCTGTAGAATATTTTCTTTTTACCAATGGATTAACATGCATATAATTTTTTTAGGTTGTTAGAGATAAGCGAACTGGTAAAACGAAGGGCTATGGATTTGTTAGCTTCTCCAATCCTACCGACCTTGCTGGAGCACTTAAAGAAATGAATGGTAATACTCTGATTTTAGTTCCACATGGGTCCTGCAGTTCTTTCATCTCTCTGTTGGACTTGTGCTTCTTGATTAGTTCTCATGACATGTAGATGTACTGTTATATCAGAAACCCTTACCTTTTTTTTTTTATAAACGAGCTTTCATGAAGAAATATGACATTGTTGGTAAGAAACCATTCCTCATTGGTGAAGTACTATGTGCTATAGCTTGACAAATTCAATTTAGGTTGTTATATATATAACATTGTTGTTCAAAAGAGTTTGATTTTTTTTGCGAGGTTGATGAAGTTATAATTTCTTTTATTTTCTCCTGTTTTTTTCTTTCACATTTTGAAGACAAATTTTAAGATTTTAAAATGTAGGTTTTGAAAAAAAATATGTATTTTTTTTGTATTCACAATTTGGTCACGATTTTAACAAGTATTTCTAAAAAGTAGAAATACGGAATTACTTTCTGAAAAAACAAAACAAAACAAACAATTTTTAGCTAGACTCCAGAATCTTCTTTTCACCTCCCTTGGAGGAATTCACCCTATGAACGACATCAATCTGTATGAACTAGCATGGGTGAATCTCATGGTCTAATGCTCAAGCTTTTAGGTGTCTTCTATGGTGTGTGGTAGCTAGAGTTTTGAAAGAAGATCTGGAGTTTGGCATGCTTCATTGTGTCTTCCTTGTGTTTTCAAGAAAATCTCTGGTTCTTTAACCCTTGAAGTCTTACTTTTACTCCTCTTTGGTATAGTTAATGTGCTTAAACCCTTCTTGATTGCAGGCAAGTACGTCGGAAATAGGCCGATAAAACTAAGAAAAAGCAATTGGAAGGAGAGGACAGACTATGAAGCCCTGGAAAGACACAAGGTAAAAAATTATGTTTCGTGGGGGTGTTCTTTTGCACATTCTTAATTTTTGATTTTTCGACTCAGACAAGTTTTTGAATCTTCTAATTTAATGACAGAACCACACTCAAAAGAAATCAAAGCTTCCAAAGAAGAGCATCTTGCACAAATAAAGACTGTTCTGCATCCTTGTTTCTCTGTTTACTCCCAGAGTATAATCGCCAATCGAGTGATCGGTATCTTATGTCGAACCTGTGTTCGAAAATTTGGTTAAGTTAGTATCTGATTGAGCTTTCTTGTCTCTGCTGCACTCTTTTTAAGTGAAGTGATTGTGCATTAGAGAAGATGTTTACTTTCTAAGGAATCAATCTTGTAAAGTGCTGTGCATTCTCCATTCTCTTTGGCAATTTAATGAATCAATGGGAAATTAATACTGTCCATA

mRNA sequence

ATGGCGGGTCCTTCTTCCTCGACTCCATCTGCAGCTTCTTCTTCATCAGGTGCCCAATTTACGTATTCAAACGGTTCTTACTTTCCTTTACCATTCCACCTCCAGCAGTCTGCCCCAGCAGCGCCAGCTCCCCAGTACCCCACTCCCTATGTCGCTGCTCCGGGTCCTTCGGCAGTTCCGCTTCCCGTCGCATCAGTTTATCCAGCTCCTACCCCGGCTCCGGCTGTATATACTCTCCCTCAGTACCAGCAGGCCCAACAACTGTTTCAAAGGGATGCCCAAACGATAACACCAGAAGCTCTTGAGAGTGTTAAAGCTGCACTTGCGAGTAGTGAGATCGAGCATAAAGCGGAAACCAAAAAGAAAGCTATTCCTCGCAAAGCTGCCGGGCAATCGTGGGAGGACCCAACACTTGCTGAGTGGCCAGAAATCTCGGTCTGTTTGAAGGCTTTTCTTGCAAATCCTTCTTCCTTTGCTTGGTCAATCCCTCTCCTTGAGTGGTGTCTTTGCCTTGTTGTGGAAGATGACTACCGTCTATTTTGTGGTGATCTTGGCAATGAAGTGAATGATGACGTGCTCTCTAAAGCATTCTCACGTTTTCCTTCATTTAACATGGCTAGAGTTGTTAGAGATAAGCGAACTGGTAAAACGAAGGGCTATGGATTTGTTAGCTTCTCCAATCCTACCGACCTTGCTGGAGCACTTAAAGAAATGAATGGTAATACTCTGATTTTAAGTTTTGAAAGAAGATCTGGAGTTTGGCATGCTTCATTGTGTCTTCCTTGTGTTTTCAAGAAAATCTCTGGTTCTTTAACCCTTGAAGTCTTACTTTTACTCCTCTTTGGTATAGTTAATGTGCTTAAACCCTTCTTGATTGCAGGCAAGTACGTCGGAAATAGGCCGATAAAACTAAGAAAAAGCAATTGGAAGGAGAGGACAGACTATGAAGCCCTGGAAAGACACAAGAACCACACTCAAAAGAAATCAAAGCTTCCAAAGAAGAGCATCTTGCACAAATAA

Coding sequence (CDS)

ATGGCGGGTCCTTCTTCCTCGACTCCATCTGCAGCTTCTTCTTCATCAGGTGCCCAATTTACGTATTCAAACGGTTCTTACTTTCCTTTACCATTCCACCTCCAGCAGTCTGCCCCAGCAGCGCCAGCTCCCCAGTACCCCACTCCCTATGTCGCTGCTCCGGGTCCTTCGGCAGTTCCGCTTCCCGTCGCATCAGTTTATCCAGCTCCTACCCCGGCTCCGGCTGTATATACTCTCCCTCAGTACCAGCAGGCCCAACAACTGTTTCAAAGGGATGCCCAAACGATAACACCAGAAGCTCTTGAGAGTGTTAAAGCTGCACTTGCGAGTAGTGAGATCGAGCATAAAGCGGAAACCAAAAAGAAAGCTATTCCTCGCAAAGCTGCCGGGCAATCGTGGGAGGACCCAACACTTGCTGAGTGGCCAGAAATCTCGGTCTGTTTGAAGGCTTTTCTTGCAAATCCTTCTTCCTTTGCTTGGTCAATCCCTCTCCTTGAGTGGTGTCTTTGCCTTGTTGTGGAAGATGACTACCGTCTATTTTGTGGTGATCTTGGCAATGAAGTGAATGATGACGTGCTCTCTAAAGCATTCTCACGTTTTCCTTCATTTAACATGGCTAGAGTTGTTAGAGATAAGCGAACTGGTAAAACGAAGGGCTATGGATTTGTTAGCTTCTCCAATCCTACCGACCTTGCTGGAGCACTTAAAGAAATGAATGGTAATACTCTGATTTTAAGTTTTGAAAGAAGATCTGGAGTTTGGCATGCTTCATTGTGTCTTCCTTGTGTTTTCAAGAAAATCTCTGGTTCTTTAACCCTTGAAGTCTTACTTTTACTCCTCTTTGGTATAGTTAATGTGCTTAAACCCTTCTTGATTGCAGGCAAGTACGTCGGAAATAGGCCGATAAAACTAAGAAAAAGCAATTGGAAGGAGAGGACAGACTATGAAGCCCTGGAAAGACACAAGAACCACACTCAAAAGAAATCAAAGCTTCCAAAGAAGAGCATCTTGCACAAATAA

Protein sequence

MAGPSSSTPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPGPSAVPLPVASVYPAPTPAPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPEISVCLKAFLANPSSFAWSIPLLEWCLCLVVEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGNTLILSFERRSGVWHASLCLPCVFKKISGSLTLEVLLLLLFGIVNVLKPFLIAGKYVGNRPIKLRKSNWKERTDYEALERHKNHTQKKSKLPKKSILHK

Homology

[Close]

BLAST of Spg017087 vs. NCBI nr
Match: XP_038890923.1 (RNA-binding protein 42-like [Benincasa hispida])

HSP 1 Score: 422.5 bits (1085), Expect = 3.3e-114
Identity = 242/339 (71.39%), Postives = 246/339 (72.57%), Query Frame = 0


Query: 1   MAGPSSSTPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPGPSAVP 60
           MAGPSS+ PSA SSSSG+QFTYSNGSYFPLPFHLQQSAPAA APQYP+PYVA PGP AVP
Sbjct: 1   MAGPSSA-PSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAAAAPQYPSPYVAPPGPPAVP 60

Query: 61  LPVASVYPAPTPAPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK 120
           LPVASVYP P PAPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK
Sbjct: 61  LPVASVYPPPAPAPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK 120

Query: 121 KKAIPRKAAGQSWEDPTLAEWPEISVCLKAFLANPSSFAWSIPLLEWCLCLVVEDDYRLF 180
           KKAIPRKAAGQSWEDPTLAEWP                               E+DYRLF
Sbjct: 121 KKAIPRKAAGQSWEDPTLAEWP-------------------------------ENDYRLF 180

Query: 181 CGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNG 240
           CGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMN 
Sbjct: 181 CGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMN- 240

Query: 241 NTLILSFERRSGVWHASLCLPCVFKKISGSLTLEVLLLLLFGIVNVLKPFLIAGKYVGNR 300
                                                                GKYVGNR
Sbjct: 241 -----------------------------------------------------GKYVGNR 253

Query: 301 PIKLRKSNWKERTDYEALERHKNHTQKKSKLPKKSILHK 340
           PIKLRKSNWKERTDYEAL RHKNHTQKKSKLPKKSILHK
Sbjct: 301 PIKLRKSNWKERTDYEALGRHKNHTQKKSKLPKKSILHK 253

[Close]

BLAST of Spg017087 vs. NCBI nr
Match: XP_022149948.1 (RNA-binding protein 42 [Momordica charantia])

HSP 1 Score: 421.8 bits (1083), Expect = 5.7e-114
Identity = 240/339 (70.80%), Postives = 243/339 (71.68%), Query Frame = 0


Query: 1   MAGPSSSTPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPGPSAVP 60
           MAGPSSS PSAASSSSGAQFT+SN SYFPLPFHLQQSAP A A QYPTPYVAAPGP  VP
Sbjct: 1   MAGPSSSAPSAASSSSGAQFTFSNASYFPLPFHLQQSAPPAAAAQYPTPYVAAPGPPPVP 60

Query: 61  LPVASVYPAPTPAPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK 120
           LPVASVYP P P PAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK
Sbjct: 61  LPVASVYPTPAPGPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK 120

Query: 121 KKAIPRKAAGQSWEDPTLAEWPEISVCLKAFLANPSSFAWSIPLLEWCLCLVVEDDYRLF 180
           KKAIPRKAAGQSWEDPTLAEWP                               E+DYRLF
Sbjct: 121 KKAIPRKAAGQSWEDPTLAEWP-------------------------------ENDYRLF 180

Query: 181 CGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNG 240
           CGDLGNEVNDDVLSK+FSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA ALKEMN 
Sbjct: 181 CGDLGNEVNDDVLSKSFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMN- 240

Query: 241 NTLILSFERRSGVWHASLCLPCVFKKISGSLTLEVLLLLLFGIVNVLKPFLIAGKYVGNR 300
                                                                GKYVGNR
Sbjct: 241 -----------------------------------------------------GKYVGNR 254

Query: 301 PIKLRKSNWKERTDYEALERHKNHTQKKSKLPKKSILHK 340
           PIKLRKSNWKERTDYEALERHKNHTQKKSKLPKKSILHK
Sbjct: 301 PIKLRKSNWKERTDYEALERHKNHTQKKSKLPKKSILHK 254

[Close]

BLAST of Spg017087 vs. NCBI nr
Match: XP_022937609.1 (RNA-binding protein 42-like [Cucurbita moschata] >XP_023538266.1 RNA-binding protein 42-like [Cucurbita pepo subsp. pepo] >KAG7020984.1 RNA-binding protein 42 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 420.6 bits (1080), Expect = 1.3e-113
Identity = 241/339 (71.09%), Postives = 244/339 (71.98%), Query Frame = 0


Query: 1   MAGPSSSTPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPGPSAVP 60
           MAGP S+ PSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAP P AVP
Sbjct: 1   MAGPFSA-PSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVP 60

Query: 61  LPVASVYPAPTPAPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK 120
           LPVASVYP P PAPA Y LPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK
Sbjct: 61  LPVASVYPTPAPAPAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK 120

Query: 121 KKAIPRKAAGQSWEDPTLAEWPEISVCLKAFLANPSSFAWSIPLLEWCLCLVVEDDYRLF 180
           KKAIPRKAAGQSWEDPTL EWP                               E+DYRLF
Sbjct: 121 KKAIPRKAAGQSWEDPTLTEWP-------------------------------ENDYRLF 180

Query: 181 CGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNG 240
           CGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMN 
Sbjct: 181 CGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMN- 240

Query: 241 NTLILSFERRSGVWHASLCLPCVFKKISGSLTLEVLLLLLFGIVNVLKPFLIAGKYVGNR 300
                                                                GKYVGNR
Sbjct: 241 -----------------------------------------------------GKYVGNR 253

Query: 301 PIKLRKSNWKERTDYEALERHKNHTQKKSKLPKKSILHK 340
           PIKLRKSNWKERTDYEAL R+KNHTQKKSKLPKKSILHK
Sbjct: 301 PIKLRKSNWKERTDYEALGRYKNHTQKKSKLPKKSILHK 253

[Close]

BLAST of Spg017087 vs. NCBI nr
Match: KAG6586152.1 (RNA-binding protein 42, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 419.1 bits (1076), Expect = 3.7e-113
Identity = 240/339 (70.80%), Postives = 243/339 (71.68%), Query Frame = 0


Query: 1   MAGPSSSTPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPGPSAVP 60
           MAGP S+ PSAASSSSGAQFTYSNGSYFPLPFHLQQSAP APAPQYPTPYVAAP P AVP
Sbjct: 1   MAGPFSA-PSAASSSSGAQFTYSNGSYFPLPFHLQQSAPGAPAPQYPTPYVAAPAPPAVP 60

Query: 61  LPVASVYPAPTPAPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK 120
           LPVASVYP P PAPA Y LPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK
Sbjct: 61  LPVASVYPTPAPAPAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK 120

Query: 121 KKAIPRKAAGQSWEDPTLAEWPEISVCLKAFLANPSSFAWSIPLLEWCLCLVVEDDYRLF 180
           KKAIPRKAAGQSWEDPTL EWP                               E+DYRLF
Sbjct: 121 KKAIPRKAAGQSWEDPTLTEWP-------------------------------ENDYRLF 180

Query: 181 CGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNG 240
           CGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMN 
Sbjct: 181 CGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMN- 240

Query: 241 NTLILSFERRSGVWHASLCLPCVFKKISGSLTLEVLLLLLFGIVNVLKPFLIAGKYVGNR 300
                                                                GKYVGNR
Sbjct: 241 -----------------------------------------------------GKYVGNR 253

Query: 301 PIKLRKSNWKERTDYEALERHKNHTQKKSKLPKKSILHK 340
           PIKLRKSNWKERTDYEAL R+KNHTQKKSKLPKKSILHK
Sbjct: 301 PIKLRKSNWKERTDYEALGRYKNHTQKKSKLPKKSILHK 253

[Close]

BLAST of Spg017087 vs. NCBI nr
Match: XP_022965496.1 (RNA-binding protein 42-like [Cucurbita maxima])

HSP 1 Score: 417.5 bits (1072), Expect = 1.1e-112
Identity = 242/341 (70.97%), Postives = 245/341 (71.85%), Query Frame = 0


Query: 1   MAGPSSSTPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPGPSAVP 60
           MAGP S+ PSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAP P AVP
Sbjct: 1   MAGPFSA-PSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVP 60

Query: 61  LPVASVYPAPTP--APAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAE 120
           LPVASVYP P P  APA YTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAE
Sbjct: 61  LPVASVYPTPAPASAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAE 120

Query: 121 TKKKAIPRKAAGQSWEDPTLAEWPEISVCLKAFLANPSSFAWSIPLLEWCLCLVVEDDYR 180
           TKKKAIPRKAAGQSWEDPTL EWP                               E+DYR
Sbjct: 121 TKKKAIPRKAAGQSWEDPTLTEWP-------------------------------ENDYR 180

Query: 181 LFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEM 240
           LFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEM
Sbjct: 181 LFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEM 240

Query: 241 NGNTLILSFERRSGVWHASLCLPCVFKKISGSLTLEVLLLLLFGIVNVLKPFLIAGKYVG 300
           N                                                      GKYVG
Sbjct: 241 N------------------------------------------------------GKYVG 255

Query: 301 NRPIKLRKSNWKERTDYEALERHKNHTQKKSKLPKKSILHK 340
           NRPIKLRKSNWKERTDYEAL R+KNHTQKKSKLPKKSILHK
Sbjct: 301 NRPIKLRKSNWKERTDYEALGRYKNHTQKKSKLPKKSILHK 255

[Close]

BLAST of Spg017087 vs. ExPASy Swiss-Prot
Match: Q66KL9 (RNA-binding protein 42 OS=Xenopus tropicalis OX=8364 GN=rbm42 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.9e-28
Identity = 107/330 (32.42%), Postives = 133/330 (40.30%), Query Frame = 0


Query: 29  PLPFHLQQSAPAAPAPQYPTPYVAAPGPSAVPLPVASVYPAPTP-----APAVYTLPQYQ 88
           P P  ++   P AP    P P          P PV    P   P     AP VYT P  +
Sbjct: 162 PPPLGMRAGPPPAPVGPLPPP----------PRPVVPSAPKMNPTVIQAAPTVYTAPPVR 221

Query: 89  QAQQLFQRDAQTITPEALESVKAALASSE------------------IEHKAETKKKAIP 148
           + ++      + + P  L   K  L+  E                  +E   E KKK  P
Sbjct: 222 KPEE------EIVEPPILPDEKETLSFEEAVIGPSMPEMEPVQPEVVLEPVQEDKKKTKP 281

Query: 149 RK-------AAGQSWEDPTLAEWPEISVCLKAFLANPSSFAWSIPLLEWCLCLVVEDDYR 208
            K       AAG SWED +L EW                                 DD+R
Sbjct: 282 EKLKRCIRTAAGTSWEDQSLLEWE-------------------------------SDDFR 341

Query: 209 LFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEM 268
           +FCGDLGNEVNDD+L++AFSR+PSF  A+V+RDKRTGKTKGYGFVSF +P D   A++EM
Sbjct: 342 IFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRAMREM 388

Query: 269 NGNTLILSFERRSGVWHASLCLPCVFKKISGSLTLEVLLLLLFGIVNVLKPFLIAGKYVG 328
           N                                                      GKYVG
Sbjct: 402 N------------------------------------------------------GKYVG 388

[Close]

BLAST of Spg017087 vs. ExPASy Swiss-Prot
Match: A2VDB3 (RNA-binding protein 42 OS=Xenopus laevis OX=8355 GN=rbm42 PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.5e-28
Identity = 100/303 (33.00%), Postives = 128/303 (42.24%), Query Frame = 0


Query: 29  PLPFHLQQSAPAAPAPQYPTPYVAAPGPSAVPLPVASVYPAPTPAPAVYTLPQYQQAQQL 88
           P P  ++   P  PAP  P P    P   + P    +V  A   AP VYT P  ++ ++ 
Sbjct: 162 PPPLGMRPGPP--PAPMGPLPPPPRPMVQSAPKINPTVIQA---APTVYTAPPVRKPEEE 221

Query: 89  FQRD------------AQTITPEALESVKAALASSEIEHKAETKKKAIPRK-------AA 148
                            +T+   ++  ++       +E   E KKKA P K       AA
Sbjct: 222 IVEPPIIPEEKESLSYEETVIGPSMPEIEPVQPEVVLEPVQEDKKKAKPEKLKRCIRTAA 281

Query: 149 GQSWEDPTLAEWPEISVCLKAFLANPSSFAWSIPLLEWCLCLVVEDDYRLFCGDLGNEVN 208
           G SWED +L EW                                 DD+R+FCGDLGNEVN
Sbjct: 282 GTSWEDQSLLEWE-------------------------------PDDFRIFCGDLGNEVN 341

Query: 209 DDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGNTLILSFER 268
           DD+L++AFSR+PSF  A+V+RDKRTGKTKGYGFVSF +P D   A +EMN          
Sbjct: 342 DDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRATREMN---------- 374

Query: 269 RSGVWHASLCLPCVFKKISGSLTLEVLLLLLFGIVNVLKPFLIAGKYVGNRPIKLRKSNW 313
                                                       GKYVG+RPIKLRKS W
Sbjct: 402 --------------------------------------------GKYVGSRPIKLRKSQW 374

[Close]

BLAST of Spg017087 vs. ExPASy Swiss-Prot
Match: Q0P5L0 (RNA-binding protein 42 OS=Bos taurus OX=9913 GN=RBM42 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.4e-27
Identity = 104/301 (34.55%), Postives = 134/301 (44.52%), Query Frame = 0


Query: 38  APAAPAPQYPTPYVAAPG-PSAVPLPVASVYPAPTPAPAVYTLPQYQQAQQLFQ-----R 97
           APA PA       V  P  P A+ +P+    P P P   V  L    +  +L       R
Sbjct: 241 APAGPA-------VIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPR 300

Query: 98  DAQTITPEALESVKAALASSEIEHKAETKK-KAIPRKAAGQSWEDPTLAEWPEISVCLKA 157
             +   P  L +++     SE + K + +K K   R AAG SWEDP+L EW         
Sbjct: 301 PPRPEPPPGLMALEVPEPLSEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWD-------- 360

Query: 158 FLANPSSFAWSIPLLEWCLCLVVEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 217
                                   DD+R+FCGDLGNEVNDD+L++AFSRFPSF  A+V+R
Sbjct: 361 -----------------------ADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIR 420

Query: 218 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGNTLILSFERRSGVWHASLCLPCVFKKISGS 277
           DKRTGKTKGYGFVSF +P+D   A++EMN                               
Sbjct: 421 DKRTGKTKGYGFVSFKDPSDYVRAMREMN------------------------------- 445

Query: 278 LTLEVLLLLLFGIVNVLKPFLIAGKYVGNRPIKLRKSNWKERTDYEALERHKNHTQKKSK 332
                                  GKYVG+RPIKLRKS WK+R     L+  +   ++K K
Sbjct: 481 -----------------------GKYVGSRPIKLRKSMWKDRN----LDVVRKKQKEKKK 445

[Close]

BLAST of Spg017087 vs. ExPASy Swiss-Prot
Match: Q9BTD8 (RNA-binding protein 42 OS=Homo sapiens OX=9606 GN=RBM42 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.9e-27
Identity = 107/303 (35.31%), Postives = 131/303 (43.23%), Query Frame = 0


Query: 38  APAAPAPQYPTPYVAAPG-PSAVPLPVASVYPAPTPAPAVY-TLPQYQQAQQLFQRDAQT 97
           APA PA       V  P  P A+ +P+    P P P   V   LP  +  + L  R    
Sbjct: 273 APAGPA-------VIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRP- 332

Query: 98  ITPEALESVKAALASSEIEHKAETKKKAIPRK-------AAGQSWEDPTLAEWPEISVCL 157
             P   E     +A    E   E KKK  P K       AAG SWEDP+L EW       
Sbjct: 333 -RPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWD------ 392

Query: 158 KAFLANPSSFAWSIPLLEWCLCLVVEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARV 217
                                     DD+R+FCGDLGNEVNDD+L++AFSRFPSF  A+V
Sbjct: 393 -------------------------ADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKV 452

Query: 218 VRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGNTLILSFERRSGVWHASLCLPCVFKKIS 277
           +RDKRTGKTKGYGFVSF +P+D   A++EMN                             
Sbjct: 453 IRDKRTGKTKGYGFVSFKDPSDYVRAMREMN----------------------------- 477

Query: 278 GSLTLEVLLLLLFGIVNVLKPFLIAGKYVGNRPIKLRKSNWKERTDYEALERHKNHTQKK 332
                                    GKYVG+RPIKLRKS WK+R     L+  +   ++K
Sbjct: 513 -------------------------GKYVGSRPIKLRKSMWKDRN----LDVVRKKQKEK 477

[Close]

BLAST of Spg017087 vs. ExPASy Swiss-Prot
Match: Q91V81 (RNA-binding protein 42 OS=Mus musculus OX=10090 GN=Rbm42 PE=1 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 1.9e-27
Identity = 107/303 (35.31%), Postives = 131/303 (43.23%), Query Frame = 0


Query: 38  APAAPAPQYPTPYVAAPG-PSAVPLPVASVYPAPTPAPAVY-TLPQYQQAQQLFQRDAQT 97
           APA PA       V  P  P A+ +P+    P P P   V   LP  +  + L  R    
Sbjct: 271 APAGPA-------VIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRP- 330

Query: 98  ITPEALESVKAALASSEIEHKAETKKKAIPRK-------AAGQSWEDPTLAEWPEISVCL 157
             P   E     +A    E   E KKK  P K       AAG SWEDP+L EW       
Sbjct: 331 -RPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWD------ 390

Query: 158 KAFLANPSSFAWSIPLLEWCLCLVVEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARV 217
                                     DD+R+FCGDLGNEVNDD+L++AFSRFPSF  A+V
Sbjct: 391 -------------------------ADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKV 450

Query: 218 VRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGNTLILSFERRSGVWHASLCLPCVFKKIS 277
           +RDKRTGKTKGYGFVSF +P+D   A++EMN                             
Sbjct: 451 IRDKRTGKTKGYGFVSFKDPSDYVRAMREMN----------------------------- 475

Query: 278 GSLTLEVLLLLLFGIVNVLKPFLIAGKYVGNRPIKLRKSNWKERTDYEALERHKNHTQKK 332
                                    GKYVG+RPIKLRKS WK+R     L+  +   ++K
Sbjct: 511 -------------------------GKYVGSRPIKLRKSMWKDRN----LDVVRKKQKEK 475

[Close]

BLAST of Spg017087 vs. ExPASy TrEMBL
Match: A0A6J1D848 (RNA-binding protein 42 OS=Momordica charantia OX=3673 GN=LOC111018240 PE=4 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 2.7e-114
Identity = 240/339 (70.80%), Postives = 243/339 (71.68%), Query Frame = 0


Query: 1   MAGPSSSTPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPGPSAVP 60
           MAGPSSS PSAASSSSGAQFT+SN SYFPLPFHLQQSAP A A QYPTPYVAAPGP  VP
Sbjct: 1   MAGPSSSAPSAASSSSGAQFTFSNASYFPLPFHLQQSAPPAAAAQYPTPYVAAPGPPPVP 60

Query: 61  LPVASVYPAPTPAPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK 120
           LPVASVYP P P PAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK
Sbjct: 61  LPVASVYPTPAPGPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK 120

Query: 121 KKAIPRKAAGQSWEDPTLAEWPEISVCLKAFLANPSSFAWSIPLLEWCLCLVVEDDYRLF 180
           KKAIPRKAAGQSWEDPTLAEWP                               E+DYRLF
Sbjct: 121 KKAIPRKAAGQSWEDPTLAEWP-------------------------------ENDYRLF 180

Query: 181 CGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNG 240
           CGDLGNEVNDDVLSK+FSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA ALKEMN 
Sbjct: 181 CGDLGNEVNDDVLSKSFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMN- 240

Query: 241 NTLILSFERRSGVWHASLCLPCVFKKISGSLTLEVLLLLLFGIVNVLKPFLIAGKYVGNR 300
                                                                GKYVGNR
Sbjct: 241 -----------------------------------------------------GKYVGNR 254

Query: 301 PIKLRKSNWKERTDYEALERHKNHTQKKSKLPKKSILHK 340
           PIKLRKSNWKERTDYEALERHKNHTQKKSKLPKKSILHK
Sbjct: 301 PIKLRKSNWKERTDYEALERHKNHTQKKSKLPKKSILHK 254

[Close]

BLAST of Spg017087 vs. ExPASy TrEMBL
Match: A0A6J1FBP0 (RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111443965 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 6.1e-114
Identity = 241/339 (71.09%), Postives = 244/339 (71.98%), Query Frame = 0


Query: 1   MAGPSSSTPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPGPSAVP 60
           MAGP S+ PSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAP P AVP
Sbjct: 1   MAGPFSA-PSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVP 60

Query: 61  LPVASVYPAPTPAPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK 120
           LPVASVYP P PAPA Y LPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK
Sbjct: 61  LPVASVYPTPAPAPAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK 120

Query: 121 KKAIPRKAAGQSWEDPTLAEWPEISVCLKAFLANPSSFAWSIPLLEWCLCLVVEDDYRLF 180
           KKAIPRKAAGQSWEDPTL EWP                               E+DYRLF
Sbjct: 121 KKAIPRKAAGQSWEDPTLTEWP-------------------------------ENDYRLF 180

Query: 181 CGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNG 240
           CGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMN 
Sbjct: 181 CGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMN- 240

Query: 241 NTLILSFERRSGVWHASLCLPCVFKKISGSLTLEVLLLLLFGIVNVLKPFLIAGKYVGNR 300
                                                                GKYVGNR
Sbjct: 241 -----------------------------------------------------GKYVGNR 253

Query: 301 PIKLRKSNWKERTDYEALERHKNHTQKKSKLPKKSILHK 340
           PIKLRKSNWKERTDYEAL R+KNHTQKKSKLPKKSILHK
Sbjct: 301 PIKLRKSNWKERTDYEALGRYKNHTQKKSKLPKKSILHK 253

[Close]

BLAST of Spg017087 vs. ExPASy TrEMBL
Match: A0A6J1HLU5 (RNA-binding protein 42-like OS=Cucurbita maxima OX=3661 GN=LOC111465380 PE=4 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 5.2e-113
Identity = 242/341 (70.97%), Postives = 245/341 (71.85%), Query Frame = 0


Query: 1   MAGPSSSTPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPGPSAVP 60
           MAGP S+ PSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAP P AVP
Sbjct: 1   MAGPFSA-PSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVP 60

Query: 61  LPVASVYPAPTP--APAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAE 120
           LPVASVYP P P  APA YTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAE
Sbjct: 61  LPVASVYPTPAPASAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAE 120

Query: 121 TKKKAIPRKAAGQSWEDPTLAEWPEISVCLKAFLANPSSFAWSIPLLEWCLCLVVEDDYR 180
           TKKKAIPRKAAGQSWEDPTL EWP                               E+DYR
Sbjct: 121 TKKKAIPRKAAGQSWEDPTLTEWP-------------------------------ENDYR 180

Query: 181 LFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEM 240
           LFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEM
Sbjct: 181 LFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEM 240

Query: 241 NGNTLILSFERRSGVWHASLCLPCVFKKISGSLTLEVLLLLLFGIVNVLKPFLIAGKYVG 300
           N                                                      GKYVG
Sbjct: 241 N------------------------------------------------------GKYVG 255

Query: 301 NRPIKLRKSNWKERTDYEALERHKNHTQKKSKLPKKSILHK 340
           NRPIKLRKSNWKERTDYEAL R+KNHTQKKSKLPKKSILHK
Sbjct: 301 NRPIKLRKSNWKERTDYEALGRYKNHTQKKSKLPKKSILHK 255

[Close]

BLAST of Spg017087 vs. ExPASy TrEMBL
Match: A0A6J1ET57 (RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111436257 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 7.5e-112
Identity = 239/339 (70.50%), Postives = 243/339 (71.68%), Query Frame = 0


Query: 1   MAGPSSSTPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPGPSAVP 60
           MAGP SSTPSA SSSSG+QFTYSNGSYFPLPFHLQQSAPA   PQYP+PYVAAPGP AVP
Sbjct: 1   MAGP-SSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVP 60

Query: 61  LPVASVYPAPTPAPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK 120
           LPV SVYPA  PAPA YTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK
Sbjct: 61  LPVTSVYPA--PAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK 120

Query: 121 KKAIPRKAAGQSWEDPTLAEWPEISVCLKAFLANPSSFAWSIPLLEWCLCLVVEDDYRLF 180
           KKAIPRKAAGQSWEDPTLAEWP                               E+DYRLF
Sbjct: 121 KKAIPRKAAGQSWEDPTLAEWP-------------------------------ENDYRLF 180

Query: 181 CGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNG 240
           CGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA ALKEMN 
Sbjct: 181 CGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMN- 240

Query: 241 NTLILSFERRSGVWHASLCLPCVFKKISGSLTLEVLLLLLFGIVNVLKPFLIAGKYVGNR 300
                                                                GKYVGNR
Sbjct: 241 -----------------------------------------------------GKYVGNR 251

Query: 301 PIKLRKSNWKERTDYEALERHKNHTQKKSKLPKKSILHK 340
           PIKLRKSNWKERTDY+ALERHKNHTQKKSKLPKKSILHK
Sbjct: 301 PIKLRKSNWKERTDYDALERHKNHTQKKSKLPKKSILHK 251

[Close]

BLAST of Spg017087 vs. ExPASy TrEMBL
Match: A0A1S4DU47 (LOW QUALITY PROTEIN: RNA-binding protein 42 OS=Cucumis melo OX=3656 GN=LOC103485881 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 9.8e-112
Identity = 237/339 (69.91%), Postives = 242/339 (71.39%), Query Frame = 0


Query: 1   MAGPSSSTPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPGPSAVP 60
           MAGPSS+ PS+ASSSS +QFTYSNGSYFPLPFHLQQSAPA   PQYP+PYVA PGP  VP
Sbjct: 1   MAGPSSA-PSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYPSPYVAPPGPPPVP 60

Query: 61  LPVASVYPAPTPAPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK 120
           LPVA VYPAP P PAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK
Sbjct: 61  LPVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK 120

Query: 121 KKAIPRKAAGQSWEDPTLAEWPEISVCLKAFLANPSSFAWSIPLLEWCLCLVVEDDYRLF 180
           KKAIPRKAAGQSWEDPTLAEWP                               E+DYRLF
Sbjct: 121 KKAIPRKAAGQSWEDPTLAEWP-------------------------------ENDYRLF 180

Query: 181 CGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNG 240
           CGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMN 
Sbjct: 181 CGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMN- 240

Query: 241 NTLILSFERRSGVWHASLCLPCVFKKISGSLTLEVLLLLLFGIVNVLKPFLIAGKYVGNR 300
                                                                GKYVGNR
Sbjct: 241 -----------------------------------------------------GKYVGNR 253

Query: 301 PIKLRKSNWKERTDYEALERHKNHTQKKSKLPKKSILHK 340
           PIKLRKSNWKERTDYEAL RHKNHTQKKSKLPKKSILHK
Sbjct: 301 PIKLRKSNWKERTDYEALGRHKNHTQKKSKLPKKSILHK 253

[Close]

BLAST of Spg017087 vs. TAIR 10
Match: AT3G04500.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 302.8 bits (774), Expect = 3.6e-82
Identity = 185/340 (54.41%), Postives = 207/340 (60.88%), Query Frame = 0


Query: 1   MAGPSSSTPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPGPSAVP 60
           M+ P SS   ++SSSS +Q+TY+  SY+  P+   Q   AAP+P  P P  + PG     
Sbjct: 1   MSIPPSS--GSSSSSSSSQYTYAANSYYSAPYQPPQPYAAAPSPAVPAPVASIPG----- 60

Query: 61  LPVASVYPAPT-PAPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120
              A+VYP P  P PAVY  PQYQQA QLFQRDAQTITPEALE+VKAALASSE EHKAET
Sbjct: 61  ---ATVYPQPVGPVPAVYAYPQYQQAHQLFQRDAQTITPEALENVKAALASSETEHKAET 120

Query: 121 KKKAIPRKAAGQSWEDPTLAEWPEISVCLKAFLANPSSFAWSIPLLEWCLCLVVEDDYRL 180
           KK+AIPRKAAGQSWEDPTL+EWP                               E+DYRL
Sbjct: 121 KKRAIPRKAAGQSWEDPTLSEWP-------------------------------ENDYRL 180

Query: 181 FCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMN 240
           FCGDLGNEVNDDVLSKAF+RFP+FNMA+V+RDKRTGKTKGYGFVSF NP DLA ALKEMN
Sbjct: 181 FCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMN 240

Query: 241 GNTLILSFERRSGVWHASLCLPCVFKKISGSLTLEVLLLLLFGIVNVLKPFLIAGKYVGN 300
                                                                 GKYVGN
Sbjct: 241 ------------------------------------------------------GKYVGN 245

Query: 301 RPIKLRKSNWKERTDYEALERHKNHTQKKSKLPKKSILHK 340
           RPIKLRKS+WKERTD EA ER K+H+ KK K  KKSILHK
Sbjct: 301 RPIKLRKSSWKERTDQEAAERQKHHSNKKQKTVKKSILHK 245

[Close]

BLAST of Spg017087 vs. TAIR 10
Match: AT3G14100.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 67.8 bits (164), Expect = 1.9e-11
Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 177 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALK 236
           + +F GDL  EV D  L ++FS F S + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 144 FNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 203

Query: 237 EMNGNTL 244
           EMNG  L
Sbjct: 204 EMNGKWL 210

[Close]

BLAST of Spg017087 vs. TAIR 10
Match: AT1G54080.1 (oligouridylate-binding protein 1A )

HSP 1 Score: 66.6 bits (161), Expect = 4.3e-11
Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 177 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALK 236
           + +F GDL  EV D  L  +FS F S + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 148 FNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 207

Query: 237 EMNG 241
           EMNG
Sbjct: 208 EMNG 211

[Close]

BLAST of Spg017087 vs. TAIR 10
Match: AT1G11650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 65.9 bits (159), Expect = 7.4e-11
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 176 DYRLFCGDLGNEVNDDVLSKAF-SRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGA 235
           DY +F GDL  +V D +L + F + +PS   A+VV D+ TG+TKGYGFV FS+ ++   A
Sbjct: 154 DYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRA 213

Query: 236 LKEMNG 241
           + EMNG
Sbjct: 214 MTEMNG 219

[Close]

BLAST of Spg017087 vs. TAIR 10
Match: AT1G11650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 65.9 bits (159), Expect = 7.4e-11
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 176 DYRLFCGDLGNEVNDDVLSKAF-SRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGA 235
           DY +F GDL  +V D +L + F + +PS   A+VV D+ TG+TKGYGFV FS+ ++   A
Sbjct: 154 DYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRA 213

Query: 236 LKEMNG 241
           + EMNG
Sbjct: 214 MTEMNG 219

The following BLAST results are available for this feature:

BLAST of Spg017087 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890923.1	3.3e-114	71.39	RNA-binding protein 42-like [Benincasa hispida]	[more]
XP_022149948.1	5.7e-114	70.80	RNA-binding protein 42 [Momordica charantia]	[more]
XP_022937609.1	1.3e-113	71.09	RNA-binding protein 42-like [Cucurbita moschata] >XP_023538266.1 RNA-binding pro...	[more]
KAG6586152.1	3.7e-113	70.80	RNA-binding protein 42, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022965496.1	1.1e-112	70.97	RNA-binding protein 42-like [Cucurbita maxima]	[more]

BLAST of Spg017087 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q66KL9	4.9e-28	32.42	RNA-binding protein 42 OS=Xenopus tropicalis OX=8364 GN=rbm42 PE=2 SV=1	[more]
A2VDB3	6.5e-28	33.00	RNA-binding protein 42 OS=Xenopus laevis OX=8355 GN=rbm42 PE=2 SV=1	[more]
Q0P5L0	1.4e-27	34.55	RNA-binding protein 42 OS=Bos taurus OX=9913 GN=RBM42 PE=2 SV=1	[more]
Q9BTD8	1.9e-27	35.31	RNA-binding protein 42 OS=Homo sapiens OX=9606 GN=RBM42 PE=1 SV=1	[more]
Q91V81	1.9e-27	35.31	RNA-binding protein 42 OS=Mus musculus OX=10090 GN=Rbm42 PE=1 SV=2	[more]

BLAST of Spg017087 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D848	2.7e-114	70.80	RNA-binding protein 42 OS=Momordica charantia OX=3673 GN=LOC111018240 PE=4 SV=1	[more]
A0A6J1FBP0	6.1e-114	71.09	RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111443965 PE=4 S...	[more]
A0A6J1HLU5	5.2e-113	70.97	RNA-binding protein 42-like OS=Cucurbita maxima OX=3661 GN=LOC111465380 PE=4 SV=...	[more]
A0A6J1ET57	7.5e-112	70.50	RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111436257 PE=4 S...	[more]
A0A1S4DU47	9.8e-112	69.91	LOW QUALITY PROTEIN: RNA-binding protein 42 OS=Cucumis melo OX=3656 GN=LOC103485...	[more]

BLAST of Spg017087 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04500.1	3.6e-82	54.41	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G14100.1	1.9e-11	47.76	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G54080.1	4.3e-11	48.44	oligouridylate-binding protein 1A	[more]
AT1G11650.2	7.4e-11	48.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G11650.1	7.4e-11	48.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 178..248 e-value: 1.6E-12 score: 57.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 179..243 e-value: 7.5E-15 score: 54.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 177..250 score: 14.487596
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 81..244 e-value: 2.0E-17 score: 65.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 317..339
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 324..339
None	No IPR available	PANTHER	PTHR47640	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	coord: 293..339
None	No IPR available	PANTHER	PTHR47640	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	coord: 38..241
None	No IPR available	PANTHER	PTHR47640:SF11	RNA-BINDING PROTEIN 42-LIKE	coord: 38..241
None	No IPR available	PANTHER	PTHR47640:SF11	RNA-BINDING PROTEIN 42-LIKE	coord: 293..339
IPR034215	RBM42, RNA recognition motif	CDD	cd12383	RRM_RBM42	coord: 174..307 e-value: 4.90934E-44 score: 144.288
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 174..243

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg017087.1	Spg017087.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding