Spg017037 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg017037
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	4F5 domain-containing protein/zf-met2 domain-containing protein
Location	scaffold9: 45343570 .. 45344968 (-)
RNA-Seq Expression	Spg017037
Synteny	Spg017037

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGCCTCTCTTCTGACTCTGAGTCACCGCATATTTCCACTTTGCAGACAGAGTGTTTGATAAAATGTCTCACTATAATAGTCCACCCTTCTAAGCCTTCTATTTTGCCATCGCGCCATGTGTTGTTGAGACTGAGAGGTGTCACGGCATGAGAAAACTGTACCGCTGACTCGCCACATGTGTTCACTTCAAAGGGTCAAAACTCAAAAGCAGAGGATGAGACAATTATGAATATTTCCTTTTCCAACTTCCATGTGTGAACAAGGTGGCTTGTTTTCAATACCAGAACTCTCCCCAACTACTCCATTAATTGATTGCATCCACCATACGATGCCGTTTCCCATCGTTTATCATTAATAGAATAATTGCCGAACAGTGTTTTTCCACTTTTGTTTGTGCTATCATCACTGGCTCCCATTTTAGCCGACGGCGAAGAAACTCCTATATATATGCAAAGGGCTTTGCTTTGGGGCGACGTGATTGATTCTGATTTTGGAACCCTTCGTTTGGAAAATGGGCGGTGGCAATGGCCAAAAGTCTAAAATGGCTCGGGAGAGAAACCTGGAGAAACAAAAATCCGCAAGAGGTAATTAACCTGCCACCTAATTCTTTCTGTTTGGTTTCTGAGAAAATGATTTGCTGAGCCCATGCGATTGCTCTTGATTCCTCTTTCTGTACTCCTTCAGCCTTTAGCTTGAGTAATGGAAAGTATAGTTGGAAGGCTAATATTAGAAAAGTCTATGCATAAATGACTAGATCGACCAAATCTAGCTGCTTGCTAATTTAGATATCAAGTATGATAGTGAAAAGACTATTACTGTAATCGTCATTGTTTTTCTTTTTTCTTCGTGGGTTTTTTGTGGGGTGGGAGGAAGACGATGATTTTCCTCTATAAAGATTAGAGTTAATTACGATCGTAATAATTTCCACAGGAAGTCAGCTGGAAACAAACAAGAAAGCCATGACAATACAGGTAAGACTCCGAGTCTTATGTACCTAATTTCTTTTGTATTCTTCGTAACTTGGAAGATTCAACCATACTATGAGCTGAAATTAAGCTCCCACGGGAGAAAATCTTTTGTAATTCTACTCGAGAGGGACAAACAAAGATTGAATCAAAAGAACTATTGTCTAAATTTTTGTTGGTCATTACCATTAGTCATTTATCTTTGTTTCTTGAAACTTAGAGATAAACACAACATCCATAAGCAGAGGAGATAGAATTGATTGAAAATTGTTGAGAGTGTTTTTGAAAGTGGGTTATTGTGGATTGTTGCAGTGCAAGGTATGCATGCAGACATTCATATGTACAACGACAGAGGTGAAGTGCAGGGAACATGCAGAAGCAAGGCACCCAAAATCTGATGTATATGCGTGTTTTCCCCATCTTAAGAAATGA

mRNA sequence

ATGGGCGGTGGCAATGGCCAAAAGTCTAAAATGGCTCGGGAGAGAAACCTGGAGAAACAAAAATCCGCAAGAGTTAATTACGATCGTAATAATTTCCACAGGAAGTCAGCTGGAAACAAACAAGAAAGCCATGACAATACAGTGGGTTATTGTGGATTGTTGCAGTGCAAGGTATGCATGCAGACATTCATATGTACAACGACAGAGGTGAAGTGCAGGGAACATGCAGAAGCAAGGCACCCAAAATCTGATGTATATGCGTGTTTTCCCCATCTTAAGAAATGA

Coding sequence (CDS)

ATGGGCGGTGGCAATGGCCAAAAGTCTAAAATGGCTCGGGAGAGAAACCTGGAGAAACAAAAATCCGCAAGAGTTAATTACGATCGTAATAATTTCCACAGGAAGTCAGCTGGAAACAAACAAGAAAGCCATGACAATACAGTGGGTTATTGTGGATTGTTGCAGTGCAAGGTATGCATGCAGACATTCATATGTACAACGACAGAGGTGAAGTGCAGGGAACATGCAGAAGCAAGGCACCCAAAATCTGATGTATATGCGTGTTTTCCCCATCTTAAGAAATGA

Protein sequence

MGGGNGQKSKMARERNLEKQKSARVNYDRNNFHRKSAGNKQESHDNTVGYCGLLQCKVCMQTFICTTTEVKCREHAEARHPKSDVYACFPHLKK

Homology

[Close]

BLAST of Spg017037 vs. NCBI nr
Match: XP_038897649.1 (uncharacterized protein At2g23090-like [Benincasa hispida])

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-24
Identity = 65/94 (69.15%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 1  MGGGNGQKSKMARERNLEKQKSARVNYDRNNFHRKSAGNKQESHDNTVGYCGLLQCKVCM 60
          MGGGNGQKSKMARERNLEKQKS+R             G++ E++   +     +QCKVCM
Sbjct: 1  MGGGNGQKSKMARERNLEKQKSSR-------------GSQLETNKKAM----TIQCKVCM 60

Query: 61 QTFICTTTEVKCREHAEARHPKSDVYACFPHLKK 95
          QTFICTTTEVKCREHAEARHPKSDVYACFPHLKK
Sbjct: 61 QTFICTTTEVKCREHAEARHPKSDVYACFPHLKK 77

[Close]

BLAST of Spg017037 vs. NCBI nr
Match: XP_008452628.1 (PREDICTED: uncharacterized protein At2g23090-like [Cucumis melo] >KAA0064431.1 uncharacterized protein E6C27_scaffold255G001420 [Cucumis melo var. makuwa] >TYK20157.1 uncharacterized protein E5676_scaffold134G002860 [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 2.6e-24
Identity = 64/94 (68.09%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 1  MGGGNGQKSKMARERNLEKQKSARVNYDRNNFHRKSAGNKQESHDNTVGYCGLLQCKVCM 60
          MGGGNGQK+KMARERNLEKQKS+R             G++ E++   +     +QCKVCM
Sbjct: 1  MGGGNGQKAKMARERNLEKQKSSR-------------GSQLETNKKAM----TIQCKVCM 60

Query: 61 QTFICTTTEVKCREHAEARHPKSDVYACFPHLKK 95
          QTFICTTTEVKCREHAEARHPKSDVYACFPHLKK
Sbjct: 61 QTFICTTTEVKCREHAEARHPKSDVYACFPHLKK 77

[Close]

BLAST of Spg017037 vs. NCBI nr
Match: XP_034927850.1 (uncharacterized protein At2g23090-like [Populus alba] >TKS05153.1 uncharacterized protein D5086_0000132500 [Populus alba])

HSP 1 Score: 121.7 bits (304), Expect = 3.4e-24
Identity = 63/94 (67.02%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 1  MGGGNGQKSKMARERNLEKQKSARVNYDRNNFHRKSAGNKQESHDNTVGYCGLLQCKVCM 60
          MGGGNGQKSKMARERN+EKQK+A+             G++ ES+   +     +QCKVCM
Sbjct: 1  MGGGNGQKSKMARERNMEKQKAAK-------------GSQLESNKKAMS----IQCKVCM 60

Query: 61 QTFICTTTEVKCREHAEARHPKSDVYACFPHLKK 95
          QTFICTTTEVKCREHAEA+HPKSDVYACFPHLKK
Sbjct: 61 QTFICTTTEVKCREHAEAKHPKSDVYACFPHLKK 77

[Close]

BLAST of Spg017037 vs. NCBI nr
Match: KAF8023208.1 (hypothetical protein BT93_F0651 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 121.3 bits (303), Expect = 4.4e-24
Identity = 63/94 (67.02%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 1  MGGGNGQKSKMARERNLEKQKSARVNYDRNNFHRKSAGNKQESHDNTVGYCGLLQCKVCM 60
          MGGGNGQK+KMARERNLEKQK+AR             G++ ES+   +     +QCKVCM
Sbjct: 1  MGGGNGQKAKMARERNLEKQKAAR-------------GSQLESNKKAMN----IQCKVCM 60

Query: 61 QTFICTTTEVKCREHAEARHPKSDVYACFPHLKK 95
          QTFICTTTEVKCREHAEA+HPKSD+YACFPHLKK
Sbjct: 61 QTFICTTTEVKCREHAEAKHPKSDLYACFPHLKK 77

[Close]

BLAST of Spg017037 vs. NCBI nr
Match: XP_030498032.1 (uncharacterized protein At2g23090 [Cannabis sativa] >KAF4350609.1 hypothetical protein F8388_018425 [Cannabis sativa] >KAF4377330.1 hypothetical protein G4B88_005808 [Cannabis sativa])

HSP 1 Score: 120.9 bits (302), Expect = 5.7e-24
Identity = 63/94 (67.02%), Postives = 71/94 (75.53%), Query Frame = 0


Query: 1  MGGGNGQKSKMARERNLEKQKSARVNYDRNNFHRKSAGNKQESHDNTVGYCGLLQCKVCM 60
          MGGGNGQK+KMARERNLEKQK A+             G++ ES+   +     +QCKVCM
Sbjct: 1  MGGGNGQKAKMARERNLEKQKGAK-------------GSQLESNKKAMS----IQCKVCM 60

Query: 61 QTFICTTTEVKCREHAEARHPKSDVYACFPHLKK 95
          QTFICTTTEVKCREHAEA+HPKSDVYACFPHLKK
Sbjct: 61 QTFICTTTEVKCREHAEAKHPKSDVYACFPHLKK 77

[Close]

BLAST of Spg017037 vs. ExPASy Swiss-Prot
Match: O64818 (Uncharacterized protein At2g23090 OS=Arabidopsis thaliana OX=3702 GN=At2g23090 PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.3e-22
Identity = 55/94 (58.51%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 1  MGGGNGQKSKMARERNLEKQKSARVNYDRNNFHRKSAGNKQESHDNTVGYCGLLQCKVCM 60
          MGGGN QKS MAR +NLEK K+A              G++ E++   +     +QCKVCM
Sbjct: 1  MGGGNAQKSAMARAKNLEKAKAA------------GKGSQLEANKKAMS----IQCKVCM 60

Query: 61 QTFICTTTEVKCREHAEARHPKSDVYACFPHLKK 95
          QTFICTT+EVKCREHAEA+HPK+DV ACFPHLKK
Sbjct: 61 QTFICTTSEVKCREHAEAKHPKADVVACFPHLKK 78

[Close]

BLAST of Spg017037 vs. ExPASy TrEMBL
Match: A0A5A7VFF4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002860 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.2e-24
Identity = 64/94 (68.09%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 1  MGGGNGQKSKMARERNLEKQKSARVNYDRNNFHRKSAGNKQESHDNTVGYCGLLQCKVCM 60
          MGGGNGQK+KMARERNLEKQKS+R             G++ E++   +     +QCKVCM
Sbjct: 1  MGGGNGQKAKMARERNLEKQKSSR-------------GSQLETNKKAM----TIQCKVCM 60

Query: 61 QTFICTTTEVKCREHAEARHPKSDVYACFPHLKK 95
          QTFICTTTEVKCREHAEARHPKSDVYACFPHLKK
Sbjct: 61 QTFICTTTEVKCREHAEARHPKSDVYACFPHLKK 77

[Close]

BLAST of Spg017037 vs. ExPASy TrEMBL
Match: A0A1S3BU86 (uncharacterized protein At2g23090-like OS=Cucumis melo OX=3656 GN=LOC103493591 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.2e-24
Identity = 64/94 (68.09%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 1  MGGGNGQKSKMARERNLEKQKSARVNYDRNNFHRKSAGNKQESHDNTVGYCGLLQCKVCM 60
          MGGGNGQK+KMARERNLEKQKS+R             G++ E++   +     +QCKVCM
Sbjct: 1  MGGGNGQKAKMARERNLEKQKSSR-------------GSQLETNKKAM----TIQCKVCM 60

Query: 61 QTFICTTTEVKCREHAEARHPKSDVYACFPHLKK 95
          QTFICTTTEVKCREHAEARHPKSDVYACFPHLKK
Sbjct: 61 QTFICTTTEVKCREHAEARHPKSDVYACFPHLKK 77

[Close]

BLAST of Spg017037 vs. ExPASy TrEMBL
Match: A0A4U5Q535 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000132500 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.6e-24
Identity = 63/94 (67.02%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 1  MGGGNGQKSKMARERNLEKQKSARVNYDRNNFHRKSAGNKQESHDNTVGYCGLLQCKVCM 60
          MGGGNGQKSKMARERN+EKQK+A+             G++ ES+   +     +QCKVCM
Sbjct: 1  MGGGNGQKSKMARERNMEKQKAAK-------------GSQLESNKKAMS----IQCKVCM 60

Query: 61 QTFICTTTEVKCREHAEARHPKSDVYACFPHLKK 95
          QTFICTTTEVKCREHAEA+HPKSDVYACFPHLKK
Sbjct: 61 QTFICTTTEVKCREHAEAKHPKSDVYACFPHLKK 77

[Close]

BLAST of Spg017037 vs. ExPASy TrEMBL
Match: A0A7J6G5F6 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_018425 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.8e-24
Identity = 63/94 (67.02%), Postives = 71/94 (75.53%), Query Frame = 0


Query: 1  MGGGNGQKSKMARERNLEKQKSARVNYDRNNFHRKSAGNKQESHDNTVGYCGLLQCKVCM 60
          MGGGNGQK+KMARERNLEKQK A+             G++ ES+   +     +QCKVCM
Sbjct: 1  MGGGNGQKAKMARERNLEKQKGAK-------------GSQLESNKKAMS----IQCKVCM 60

Query: 61 QTFICTTTEVKCREHAEARHPKSDVYACFPHLKK 95
          QTFICTTTEVKCREHAEA+HPKSDVYACFPHLKK
Sbjct: 61 QTFICTTTEVKCREHAEAKHPKSDVYACFPHLKK 77

[Close]

BLAST of Spg017037 vs. ExPASy TrEMBL
Match: A0A0A0KZW6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642360 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.8e-24
Identity = 63/94 (67.02%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 1  MGGGNGQKSKMARERNLEKQKSARVNYDRNNFHRKSAGNKQESHDNTVGYCGLLQCKVCM 60
          MGGGNGQK+KMARERNLEKQK++R             G++ E++   +     +QCKVCM
Sbjct: 1  MGGGNGQKAKMARERNLEKQKASR-------------GSQLETNKKAM----TIQCKVCM 60

Query: 61 QTFICTTTEVKCREHAEARHPKSDVYACFPHLKK 95
          QTFICTTTEVKCREHAEARHPKSDVYACFPHLKK
Sbjct: 61 QTFICTTTEVKCREHAEARHPKSDVYACFPHLKK 77

[Close]

BLAST of Spg017037 vs. TAIR 10
Match: AT2G23090.1 (Uncharacterised protein family SERF )

HSP 1 Score: 105.1 bits (261), Expect = 3.0e-23
Identity = 55/94 (58.51%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 1  MGGGNGQKSKMARERNLEKQKSARVNYDRNNFHRKSAGNKQESHDNTVGYCGLLQCKVCM 60
          MGGGN QKS MAR +NLEK K+A              G++ E++   +     +QCKVCM
Sbjct: 1  MGGGNAQKSAMARAKNLEKAKAA------------GKGSQLEANKKAMS----IQCKVCM 60

Query: 61 QTFICTTTEVKCREHAEARHPKSDVYACFPHLKK 95
          QTFICTT+EVKCREHAEA+HPK+DV ACFPHLKK
Sbjct: 61 QTFICTTSEVKCREHAEAKHPKADVVACFPHLKK 78

The following BLAST results are available for this feature:

BLAST of Spg017037 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897649.1	1.2e-24	69.15	uncharacterized protein At2g23090-like [Benincasa hispida]	[more]
XP_008452628.1	2.6e-24	68.09	PREDICTED: uncharacterized protein At2g23090-like [Cucumis melo] >KAA0064431.1 u...	[more]
XP_034927850.1	3.4e-24	67.02	uncharacterized protein At2g23090-like [Populus alba] >TKS05153.1 uncharacterize...	[more]
KAF8023208.1	4.4e-24	67.02	hypothetical protein BT93_F0651 [Corymbia citriodora subsp. variegata]	[more]
XP_030498032.1	5.7e-24	67.02	uncharacterized protein At2g23090 [Cannabis sativa] >KAF4350609.1 hypothetical p...	[more]

BLAST of Spg017037 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64818	4.3e-22	58.51	Uncharacterized protein At2g23090 OS=Arabidopsis thaliana OX=3702 GN=At2g23090 P...	[more]

BLAST of Spg017037 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VFF4	1.2e-24	68.09	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BU86	1.2e-24	68.09	uncharacterized protein At2g23090-like OS=Cucumis melo OX=3656 GN=LOC103493591 P...	[more]
A0A4U5Q535	1.6e-24	67.02	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000132500 PE=4 SV=1	[more]
A0A7J6G5F6	2.8e-24	67.02	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_018425 PE=4 SV=1	[more]
A0A0A0KZW6	2.8e-24	67.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642360 PE=4 SV=1	[more]

BLAST of Spg017037 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G23090.1	3.0e-23	58.51	Uncharacterised protein family SERF	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039438	At2g23090-like, zinc-binding domain	PFAM	PF12907	zf-met2	coord: 55..92 e-value: 3.1E-20 score: 72.0
IPR026939	ZNF706/At2g23090 superfamily	GENE3D	4.10.1050.10		coord: 1..94 e-value: 1.2E-20 score: 75.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..41
None	No IPR available	PANTHER	PTHR33788:SF14	SUBFAMILY NOT NAMED	coord: 1..94
None	No IPR available	SUPERFAMILY	118359	Expressed protein At2g23090/F21P24.15	coord: 1..93
IPR039713	At2g23090-like	PANTHER	PTHR33788	OS07G0114300 PROTEIN	coord: 1..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg017037.1	Spg017037.1	mRNA