Spg017026 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg017026
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Copper amine oxidase family protein
Location	scaffold9: 40299438 .. 40300240 (+)
RNA-Seq Expression	Spg017026
Synteny	Spg017026

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCATAGAAGTTTACACTTGAACTTGTTTGCCCTTACCACTCTTATTATCTTTCTCCTTCACTTCCTGTCTGTAACATCACGGCCACTGCATGACATTCATCCACCGGCCGCCATTGCGGTCGGCTCTCGCAATTGCCATGCAATAGCGCCTCCTGCTCCGGTGTTAGCGTTCTCGATAAACCGATATAAATACGTCGAGATGGATGCCTTTCGGCCGACTTCACCCGGGCACAGCCCTGGTGTCGGCCACAAGGATCCGCCAGGTACGCCGTAGGCCTGCCATCGCTGGAGCTGCATCTATATGGCTGGACTTTGCAATGTGGTTGTGTACTCTTTCTTCAGTTTGGAGAATGATTTTGGGATTGTGTTTTGTAATGTGTTTCCTTTTTGGTGTGCTTTTTGATTGAAAGTTTAATGCATCCTTTGGCTTTTGCTCTTTCATATATATAGTTTCTCTCCCTCAAAATAAATAGGTTTGTATTTGCTACGCTTTAGAAGTGTTAGTTAACTCATTACCTTTAGGGTTGTCTACGTAGCAATATGATTGGAGCAGAGCTTAAATATGTTTTTCTTTGGTGAGTTGTAGGTTTGAATCTCTTCTCTTATTTATGAAATGTTAAATTATAAAAACTATTAGAGGTTGTGATTGAGTGATCAATTTTATTTGGTTTATGATAAATTATGTTAGCTCACTTTAAATTGATGCTTCATTGTTTAAAGTTATTGTTTAAAATTTATTTGATTATGTATATTTTCTGGGCAGATATTCTGTCTGTCTTTCCTATTCAATCTCCATAG

mRNA sequence

ATGGCTCATAGAAGTTTACACTTGAACTTGTTTGCCCTTACCACTCTTATTATCTTTCTCCTTCACTTCCTGTCTGTAACATCACGGCCACTGCATGACATTCATCCACCGGCCGCCATTGCGGTCGGCTCTCGCAATTGCCATGCAATAGCGCCTCCTGCTCCGGTGTTAGCGTTCTCGATAAACCGATATAAATACGTCGAGATGGATGCCTTTCGGCCGACTTCACCCGGGCACAGCCCTGGTGTCGGCCACAAGGATCCGCCAGATATTCTGTCTGTCTTTCCTATTCAATCTCCATAG

Coding sequence (CDS)

ATGGCTCATAGAAGTTTACACTTGAACTTGTTTGCCCTTACCACTCTTATTATCTTTCTCCTTCACTTCCTGTCTGTAACATCACGGCCACTGCATGACATTCATCCACCGGCCGCCATTGCGGTCGGCTCTCGCAATTGCCATGCAATAGCGCCTCCTGCTCCGGTGTTAGCGTTCTCGATAAACCGATATAAATACGTCGAGATGGATGCCTTTCGGCCGACTTCACCCGGGCACAGCCCTGGTGTCGGCCACAAGGATCCGCCAGATATTCTGTCTGTCTTTCCTATTCAATCTCCATAG

Protein sequence

MAHRSLHLNLFALTTLIIFLLHFLSVTSRPLHDIHPPAAIAVGSRNCHAIAPPAPVLAFSINRYKYVEMDAFRPTSPGHSPGVGHKDPPDILSVFPIQSP

Homology

[Close]

BLAST of Spg017026 vs. NCBI nr
Match: KAG6608019.1 (Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.2 bits (300), Expect = 1.0e-23
Identity = 61/82 (74.39%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 8  LNLFALTTLIIFLLHFLSVTSRPLHDIHPPAAIAVGSRNCHAIAPPAPVLAFSINRYKYV 67
          L  F L  L++FLL+FLSVTSRP HDI+ P AI VG  N HAI PPA +  FSINRYKYV
Sbjct: 3  LRSFHLLALVVFLLYFLSVTSRPRHDIYSP-AIVVGFGNRHAITPPASMSTFSINRYKYV 62

Query: 68 EMDAFRPTSPGHSPGVGHKDPP 90
          EMDAFRPTSPGHSPGVGHKDPP
Sbjct: 63 EMDAFRPTSPGHSPGVGHKDPP 83

[Close]

BLAST of Spg017026 vs. NCBI nr
Match: KAG6591857.1 (Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.1 bits (292), Expect = 8.8e-23
Identity = 68/94 (72.34%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 2  AHRSLH-LNLFALTTLIIFLLHFLSVTSRPLHDIHP---PAAIAVGSRNCHAIAPPAPV- 61
          A RSLH +NL  L TL   LLH LSVTSRPLH I P    AA+AV S +CHAI PPAPV 
Sbjct: 3  ARRSLHFINLLPLITL---LLHSLSVTSRPLHGIDPLPSAAAMAVVSAHCHAILPPAPVS 62

Query: 62 -LAFSINRYKYVEMDAFRPTSPGHSPGVGHKDPP 90
           LAFSINRYKYVE DAFRPT+PGHSPGVGH DPP
Sbjct: 63 TLAFSINRYKYVETDAFRPTTPGHSPGVGHTDPP 93

[Close]

BLAST of Spg017026 vs. NCBI nr
Match: EEF42541.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-11
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1  MAHRSLHLNLFALTTLIIFLLHFLSVTSRPLHDIHPPAAIAVGSRNCHAIAPPAPVLAFS 60
          MA+R+  L LFA++ L++      +V SRPLH +HPPA I+ GS       PP+  L +S
Sbjct: 1  MANRAFLLTLFAISFLLLHQHLDSAVASRPLH-MHPPAIISQGS--LKRPLPPSTALLYS 60

Query: 61 INRYKYVEMDAFRPTSPGHSPGVGHKDPP 90
          INR+K+ E +AFRPT+PGHS GVGH +PP
Sbjct: 61 INRHKFTETEAFRPTAPGHSSGVGHGNPP 86

[Close]

BLAST of Spg017026 vs. NCBI nr
Match: EXC31035.1 (hypothetical protein L484_021337 [Morus notabilis])

HSP 1 Score: 74.7 bits (182), Expect = 5.0e-10
Identity = 40/83 (48.19%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 9  NLFALTTLIIFLLHFLSVT--SRPLHDIHPPAAIAVGSRNCHAIAPPAPVLAFSINRYKY 68
          +L +L   ++ LLH +  T  SRPLH +HPP  +  G        PP+    FS+N YK 
Sbjct: 8  SLLSLYMAVLLLLHSIGFTSSSRPLHVVHPPVNVLGGPPYKSKPRPPS-TKWFSVNHYKI 67

Query: 69 VEMDAFRPTSPGHSPGVGHKDPP 90
           E DAFRPT+PGHSPGVGH  PP
Sbjct: 68 AETDAFRPTAPGHSPGVGHGSPP 89

[Close]

BLAST of Spg017026 vs. NCBI nr
Match: OAY29952.1 (hypothetical protein MANES_15G184800v8 [Manihot esculenta])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 41/84 (48.81%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 10 LFALTTLIIFLLH----FLSVTSRPLHDIHPPAAIAVGSRNCHAIAPPAPVLAFSINRYK 69
          LF+L   ++ LLH         SR LH   PP    +  RN      P   + + INRYK
Sbjct: 7  LFSLVAGVVILLHLQMDLAEAASRQLHIHPPPFPNKLSLRN----PKPPSFILYGINRYK 66

Query: 70 YVEMDAFRPTSPGHSPGVGHKDPP 90
          Y E +AFRPTSPGHSPGVGHKDPP
Sbjct: 67 YTESEAFRPTSPGHSPGVGHKDPP 86

[Close]

BLAST of Spg017026 vs. ExPASy Swiss-Prot
Match: P0DN99 (Precursor of CEP12 OS=Arabidopsis thaliana OX=3702 GN=CEP12 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.6e-06
Identity = 33/85 (38.82%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 11 FALTTLIIFLLHFLSVTS--RPLHDIHPPAAIAVGSRNCHAIAPPAPVLA----FSINRY 70
          F +  L++  LHF + T+  +P+    PP++I          +PP+P       F IN Y
Sbjct: 13 FFMLFLLVLHLHFETTTAARKPVRVFGPPSSI--------EWSPPSPPKDDFEWFEINIY 72

Query: 71 KYVEMDAFRPTSPGHSPGVGHKDPP 90
          K +E  AFRPT  G S G+GHKDPP
Sbjct: 73 KNIEQTAFRPTGQGPSQGIGHKDPP 89

[Close]

BLAST of Spg017026 vs. ExPASy Swiss-Prot
Match: Q3EBM6 (Precursor of CEP4 OS=Arabidopsis thaliana OX=3702 GN=CEP4 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 6.6e-05
Identity = 23/44 (52.27%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 51 APPAP-----VLAFSINRYKYVEMDAFRPTSPGHSPGVGHKDPP 90
          +PP P     V    INR+K +E DAFRPT  G S G+GHK+PP
Sbjct: 40 SPPEPPKDDFVWYHKINRFKNIEQDAFRPTHQGPSQGIGHKNPP 83

[Close]

BLAST of Spg017026 vs. ExPASy TrEMBL
Match: A0A0A0KWX0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G244900 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.4e-20
Identity = 62/96 (64.58%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 1  MAHRSLHLNLF---ALTTLIIFLLHFLSVT-SRPLHDIHPPAAIAVGSRNCHAIAPPAPV 60
          MAHRSLHLN F       L++ LLH L VT SRPLH IHP         N HAI PPAPV
Sbjct: 1  MAHRSLHLNSFFPLVALLLLLLLLHSLFVTSSRPLHGIHP--------HNPHAITPPAPV 60

Query: 61 ---LAFSINRYKYVEMDAFRPTSPGHSPGVGHKDPP 90
              +FSINRYKYVE DAFRPTSPGHSPGVGH +PP
Sbjct: 61 SLETSFSINRYKYVETDAFRPTSPGHSPGVGHNEPP 88

[Close]

BLAST of Spg017026 vs. ExPASy TrEMBL
Match: B9S1S2 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0867620 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.8e-12
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1  MAHRSLHLNLFALTTLIIFLLHFLSVTSRPLHDIHPPAAIAVGSRNCHAIAPPAPVLAFS 60
          MA+R+  L LFA++ L++      +V SRPLH +HPPA I+ GS       PP+  L +S
Sbjct: 1  MANRAFLLTLFAISFLLLHQHLDSAVASRPLH-MHPPAIISQGS--LKRPLPPSTALLYS 60

Query: 61 INRYKYVEMDAFRPTSPGHSPGVGHKDPP 90
          INR+K+ E +AFRPT+PGHS GVGH +PP
Sbjct: 61 INRHKFTETEAFRPTAPGHSSGVGHGNPP 86

[Close]

BLAST of Spg017026 vs. ExPASy TrEMBL
Match: W9S854 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021337 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.4e-10
Identity = 40/83 (48.19%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 9  NLFALTTLIIFLLHFLSVT--SRPLHDIHPPAAIAVGSRNCHAIAPPAPVLAFSINRYKY 68
          +L +L   ++ LLH +  T  SRPLH +HPP  +  G        PP+    FS+N YK 
Sbjct: 8  SLLSLYMAVLLLLHSIGFTSSSRPLHVVHPPVNVLGGPPYKSKPRPPS-TKWFSVNHYKI 67

Query: 69 VEMDAFRPTSPGHSPGVGHKDPP 90
           E DAFRPT+PGHSPGVGH  PP
Sbjct: 68 AETDAFRPTAPGHSPGVGHGSPP 89

[Close]

BLAST of Spg017026 vs. ExPASy TrEMBL
Match: A0A2C9UJ23 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G184800 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.4e-10
Identity = 41/84 (48.81%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 10 LFALTTLIIFLLH----FLSVTSRPLHDIHPPAAIAVGSRNCHAIAPPAPVLAFSINRYK 69
          LF+L   ++ LLH         SR LH   PP    +  RN      P   + + INRYK
Sbjct: 7  LFSLVAGVVILLHLQMDLAEAASRQLHIHPPPFPNKLSLRN----PKPPSFILYGINRYK 66

Query: 70 YVEMDAFRPTSPGHSPGVGHKDPP 90
          Y E +AFRPTSPGHSPGVGHKDPP
Sbjct: 67 YTESEAFRPTSPGHSPGVGHKDPP 86

[Close]

BLAST of Spg017026 vs. ExPASy TrEMBL
Match: A0A6N2KEL8 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS36007 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.5e-09
Identity = 45/87 (51.72%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 11 FALT--TLIIFLLH---FLSVTSRPLHDIHPPAAIAVGSRNCHAIAPPAPVLA---FSIN 70
          F LT  T ++ LLH    L+  SRPL DIH PA    GS   +   PPA ++    + IN
Sbjct: 8  FTLTFFTAVLLLLHQHFDLTAASRPL-DIHSPAIPGPGSLR-NPRPPPADIVHDSWYRIN 67

Query: 71 RYKYVEMDAFRPTSPGHSPGVGHKDPP 90
          RYK +E DAFRPT+PGHSPGVGH++PP
Sbjct: 68 RYKNMESDAFRPTTPGHSPGVGHEEPP 92

[Close]

BLAST of Spg017026 vs. TAIR 10
Match: AT1G31670.1 (Copper amine oxidase family protein )

HSP 1 Score: 58.2 bits (139), Expect = 4.5e-09
Identity = 38/95 (40.00%), Postives = 51/95 (53.68%), Query Frame = 0


Query: 11  FALTTLIIFLLHFLSVTS--RPLHDIHPPAAIAVGSRNCHAIAPPAPVLA----FSINRY 70
           F +  L++  LHF + T+  +P+    PP++I          +PP+P       F IN Y
Sbjct: 13  FFMLFLLVLHLHFETTTAARKPVRVFGPPSSI--------EWSPPSPPKDDFEWFEINIY 72

Query: 71  KYVEMDAFRPTSPGHSPGVGHKDPPDILSVFPIQS 100
           K +E  AFRPT  G S G+GHKDPP   SVF I S
Sbjct: 73  KNIEQTAFRPTGQGPSQGIGHKDPPVFSSVFVIGS 99

[Close]

BLAST of Spg017026 vs. TAIR 10
Match: AT2G35612.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G31670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 4.7e-06
Identity = 23/44 (52.27%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 51 APPAP-----VLAFSINRYKYVEMDAFRPTSPGHSPGVGHKDPP 90
          +PP P     V    INR+K +E DAFRPT  G S G+GHK+PP
Sbjct: 40 SPPEPPKDDFVWYHKINRFKNIEQDAFRPTHQGPSQGIGHKNPP 83

The following BLAST results are available for this feature:

BLAST of Spg017026 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608019.1	1.0e-23	74.39	Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6591857.1	8.8e-23	72.34	Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
EEF42541.1	1.2e-11	50.56	conserved hypothetical protein [Ricinus communis]	[more]
EXC31035.1	5.0e-10	48.19	hypothetical protein L484_021337 [Morus notabilis]	[more]
OAY29952.1	1.1e-09	48.81	hypothetical protein MANES_15G184800v8 [Manihot esculenta]	[more]

BLAST of Spg017026 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0DN99	4.6e-06	38.82	Precursor of CEP12 OS=Arabidopsis thaliana OX=3702 GN=CEP12 PE=2 SV=1	[more]
Q3EBM6	6.6e-05	52.27	Precursor of CEP4 OS=Arabidopsis thaliana OX=3702 GN=CEP4 PE=2 SV=1	[more]

BLAST of Spg017026 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWX0	3.4e-20	64.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G244900 PE=3 SV=1	[more]
B9S1S2	5.8e-12	50.56	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0867620 PE=3 SV=1	[more]
W9S854	2.4e-10	48.19	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021337 PE=3 SV=1	[more]
A0A2C9UJ23	5.4e-10	48.81	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G184800 PE=3 SV=...	[more]
A0A6N2KEL8	3.5e-09	51.72	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS36007 PE=3 SV=1	[more]

BLAST of Spg017026 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31670.1	4.5e-09	40.00	Copper amine oxidase family protein	[more]
AT2G35612.1	4.7e-06	52.27	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..100
None	No IPR available	PANTHER	PTHR33348:SF20	PRECURSOR OF CEP4	coord: 7..89
IPR033250	C-terminally encoded peptide	PANTHER	PTHR33348	PRECURSOR OF CEP5	coord: 7..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg017026.1	Spg017026.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050793	regulation of developmental process
biological_process	GO:0048364	root development