Spg016984 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg016984
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA repair protein recA homolog 1, chloroplastic
Locationscaffold9: 40158235 .. 40165430 (+)
RNA-Seq ExpressionSpg016984
SyntenySpg016984
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAAGACCGACAAGAGAAGCCCATGGAGGGGTTGGGACTCTACAAACGAAAATCCCTCCTCGACGTACTGAAGGTGGTCTCCTCGATCAAAGACAGAAGAGACATGAGGTTTGTAGTGTCCCTATTAGACAAAGAACGGGCGAAGCCAAAAGAGTAGGATAGAGAGCTCCCTGAAGGGTTCAAAACCTCGGCCACAGAGCGATTTTTCATAGAAGATAAATGATAAAGCCGAGGAAAAATAGCACAAAGGGGTCTCTCCTCCACCCACCTGTCTTCCCAGAAATAAGTATCCTCCCCATTCCCCACAGAACATCGAATAAAAGAGGTCAAAAAAGAGAGCTCGTGAGAGATTTCTTTCCACGGATTTCTAGAAGTGCCTTTGATCCCCCCGTCACCCAATCAGAAGGGTGAGGGTCGTATTTGCTAACAATAATCTTATGCCACAGTGTTGGATTCAGAGTAAAAGCGCCAAAGCCATTTTGCCAGCAAAGCTTTGTTACGAATTCTCAAATTACCCACTTCTAGCCCCCCTGATTTAAAGGCTTCCCCACTAAGTCCCAGCTCACCGGATGCATAGATTTGCCTTCATCTACACCTTCCCACAGAAAGTCCCTCATAAGCTTCTCAAGAGCTTTACAAACCGAACAGGGGGCTCTGAAAAGAGAAAAATAATAGATAGGAATCCCACTTAACACAGATCGGATGAGGGTCAACCTACCTCCTTTGGAGAAAAAACTCTTCTTCCAACTTGCAAGTCTTTTCCTCACCTTATCTATCACAGGGTCCCAGAACAGTGTAGATCTCGCATTATGCCCCAAAGGCAAGCCTAAATAAGAAGAAGGGAGCGAACTCATGTCACAACCAACAAGCTCTGCCCATCTCCTCGCCTTAATAACCTCACAGTCCAGGCCCAAAATCTGGCATTTACCCCTATTAATTTTTAGACCGGACATGGATTCAAAGAAGGCCAGGATGTGGTTCAAAAGAAGGAAGGAGTCCTCTTTTCCGGAGCAAAAGAAGATCGTATCATCCGCAAACTGAAGGTGGGATAAAGGAACCTTGTTTTGACCGATCTCGAAACCTTCAAGAATTCTGCCCTCCACTCCTCTAAAAATGATCCTACTAAGGGTGTCCACAACCAGGAGAAAGAGGAACGGGGATAGGGGGTCCCCTTGACGAAGGCCCCGGGTAGCCCGAATTCTTCCCTTTGGTCTCCCGTTGATGAGAATCGAATACGTTACTGATCTCGTACAACTCCAAATCCAAGATCGCCACTTATACCCAAATCCTTTCTTTTCCAAAATCTTGTCCGAGAAATTCCAGTCCACATGATCATAGGCCTTCTCAAAGTCAATCTTAAAAATCACTCCCTCACGACCACTCCCCCGATAGTCCTCAATGGCCTCATTCGCAATAAGGGCTTGGTCCAAGATTTGTCTTCCTTCAAGAAAGGCAGCCTGAGCCTCAGTGATAGTAGATGGCAGAACTTTTTTCAGTCTCTTAGTGAGCACCTTGGCAATGATCTTGTACACACTTGTAATCAGACTAATAGGTCTGAAGTCTTTCACCTTGTTAGCTCTATCTTTCTTGGGAATGAGACACACAAAAGTCTCATTTAATGAACTGTCCAGGATACCTCGCTCAAAGAACTCTGTAAAAACTCGCACCAGATCCCCCTTAATCTCATTCCACTTGTCTTGGAAAAAGGCCATAGAAAAACCATCCGGGCCAGGGGCTTTATCTCTATCGCACTCAAAAACCGCCTTCCTAATTTCCTCCAAAGAGAAAGGGGCATCCAAGTCATTTTTCTCCCTATCAGATATGGGATTCCAGTCAATCCCTTCAACAAAAGGCTTGGGGGACTCCTGAGGGGCATAAAGATTTGAGAAGAAAGAAATGATCTCCCTCGCAATATCTTCCTCCTCATGGAGCATCACTCCCATATTATTCTCAAGAAGGCCTATTGTTTTCTTACTTCTTTTACCACTAGCCATCCTATGGAAAAAAGCCGAGTTGCAATCACCATCCTTAGCCCACTTAACCTTAGCCTTTTGTCTCCAGCTAATAGTCTCCTTTTCGACCAGCTTAGCAAACTCGCATTTGAGAGACAAACGCTCACCCTTTAAGATCTCATCTATAAGACCATCCTCCTCCAAAGAATCGATCTCTTTGATCCTGTTCAACACTTCCGGCTTCTTAATCCTAATATCCCCAAAGACTTCTTAATCCTAGAAAGTGAAAACCCATGTAGCTTGACAATCTCTCGAACAAACAAATCAGCCACTTTTCTTTTTTGTAGTAAATGGATGGCCTAAAGGAAGAAAATGAGCATGCTTAAGCAATCCACAGCTTCCAAAATGATGCTAAATCCATCCAACAAAGGAAGGCCCTCAATAAAATCCATAAAAATATCATCCCACACTCGTTGAGGAATGGGCAAAGGTTGGAGTATAACCCAGTCAGAGATAGATTTTGGGCTTTATTCTGCTGTCAAATGGGGCATTCCTCAACATAATTTTTAACATCTCTTTTCATCCCTTACCAATAAAACTCAGAAGTGAGGCATTTATAAGTACGCAAAAATCCTGAATGACCTTCCATTGCAGTATTATGAAAAGTATATAAAAGGGTAGGGATAAATGGAGAACCTGGCAACACCAATGCCCCTTATAAAGCAAATTGCCATGGGAAAGAGAGTATTTTGGAACTGAATCTGCATCTAGTTTTAATTGTTGCAAAATTTCAACCAAACAAGAATCGGTGGCAACCTGAAGAGCCATAACGTTTGTGTTTAAAGAATAGGGAACAAAAATATGATGCAACCCAACCTCATGACATTAGATAAAGCATCTGTGGCATGGTTCTCATGGTCTGGTTTAAACTGGATCTCAAAATCATACCCAAGCAATTTAGTCACCCATCTCTGATAGTCTAAAGGAATTACACATTGTTCAAGAAGAAATTTCAAAGCACATTGATCCGTTCATACCACAAAATGGCAACCCAATAGATAAGGGCGCCAACGTTGAATAGCCAAAATAATTGCCATCAACTTATGTTCATAAATAGGTTTAAGTTGTGCTCGCTTAGATAGAACTTGATTGAAATAAGAAATTGGGCAACTCTTTTGCTTTAAAACAGCGCCTAATCTGGTGCTGGACACGTTAGCCTTGACAATAAATCACGTGTATAATCTGGCAGGGCGAGTACTGGAACTGTGACCATAGCTTCTTTTAGCCTTTCAAATGCTTGTTTGAGCCTCATCATTCCAATCAAAAGCATCCTTCTTTAATTGATGTGTTAAAGGCGTCAATAATGCTCCATAATTGGCAGCAAAACGACAATAATACGTCCATTCCAAAAACCCACGTAAATTCTTTGAGGTTTTTAGGCAATAGCCACTGTGACATGGCTTAAATTTTCTCAATACCAGCCTCAACTCCATTAGCTGAAACCCAATGGCCTAAATATTCTGCTCGATGACATTTTTATAGATTTGCATACAATTTGTTTTTCGCCAACAAGGAAAAACCGTGGGTGGATGTGATGAGACTCCATATCTGAACTGTAAATCAAAATGTCATAAAAAAAACCCAAAACAAATTTTCGTAAATAAGGTCTAAAAACCTGAGTCATCAGAGCTTGGAAAGTGGTTGGAGCATTGATCAACCCAAAAGGCATAACTATAAATTCATATTGTCCTTCATGTTTATGAAAAGCTGTTTTTGGAGTATAATATCCTCTTTAAACATGTGGATCTAGTGATAACCTGATTTTAGACCAATTTTTGAAAATACTTGAATCCCATGTAATTCATCAAGGAGTTCTTCAATTACTAGTATTGGAAATTCATCCGAGATGGTTGCAACATTCAAAGCTCGTTAGTCAACACAGAAACACCAACTTCCACCTTTTTTTCTAACCAATGGGACTGGACTAGAAAAGGGGCTAGTACTTGGACAAATTATTCCAGCCATAAGCATCCCATGAACCAACCTTTCAATTTCATTTTTTTGAACATGAGGATATTGATAAGGACACACATTGATGGGTTTTGAATTAGACCGCAATTGAATTCGATGATCAAGATCACATCCTACTGGCAAAGAATCTGGCATGTCAAAATGTCCTCAAATTCTGATAACAATGATTGAATATTAACCGGTAAATCCTTTTTACTTTCACTCGTCAGTACCGTACTCTTGCTTGACATAGCACTTACTGAAACCTTCTTCAACTCAATTAAATACCCTTGGTCTTCAGATTGCCATTTGCAGACAATAGATTTGAGAGAAGCAGGTAATTGAGAAAGTTTTGGGTTTCCCTTTAATATCACCTCTGTTAAATCTCTAATGAACTTCATAGTTAATCTATTCCAATTAACTGACACGTCGCCCAACTATCTAACCAAGGCATATCGAGTATCACATCAATATTTCCCAATTCAAGGGGAAGAAAACCCTCCGCCATAGTTATCCCATAATGAAACAAACTAATAAAATAACTACCACGAACATTTCCAAGATAAAAAGAACTACCAAACGTCTCAGATTTGGCTTCCAAATAGGATACTGTTTCGCTAACCACCAAAGTGGTTTGCCATGAGAAGTTTGATAAAGTTCATTATTTTAGGCATGCGCAAGATGTTTTATTATATTTCTAAAGTTACAATACAACAGGGATTATTCATCCTTTTTGCAAATTTCATACATCAATGAAATTGTTTCTTATCCCAAAAAAAATACAACATTTTGATGGATTAGTTATTAAAAAAAAAAAACCATCACTCAACCATCATGGGTTGGCCCTAATGGTCAATAAGGGCCATAGAAAAAATAAAGGGCTTAGAGGGAATGGGTTCAATCCATGGTGGCCAACCTACCTAGGATATTTAATATACTACTAGTTTCCTTGGCAACCAAATGTAGTAGGGTCAGGCGGTTGTCCCGTGAGATTAGTCGAGGTGCGTGTAAGCTGGCCCGGACACTCACGGATATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCATCACTCTGTCATATTGGCTTCTTGTCATTTGAACTTTTTGTAGTTGTCTCATATCAATTAAATCGAATGCTTTGCTATGATATCTTCTTACCATTATGGTATATGGCAGGAATGTTAGTGTTCTGCAACTTACCAGATTGTGCAGGCATTTAGTTTAGTTCTTAAAATATTATTCATGCTCGTAATTTAGAAAAGGCTCTATATTGCCACCTTGAGTTCGCAATCTTTTTTCCATAGAACATAGATCCTCTTATCCTAAATGGGTTGCTATAGGTGTCGAGGCCATACAAGCAAGCTGAATTTGAAATTATCTTTGGAGAGGGAGTAAGTAAACTGGTCAGTATTGTAAGAGTAAACATTTTTCAATTGCAGGTACAAAATATTATCTGTTCTAACTTCACATTTTACTCTTCTCTCCACAGGGCTGCATTTTAGATTGTGCTGAAATTATGGACGTTGTAGTGAAAAAGGGCTCGTGGTACAGTTACGGGGACCACAGGTTTGTCTTGTGCTCATATAAATCACATTTTGGAGAAACATTGGATATTTGATTTCAATTGCTCGTGCAGATTTCATCATTCATTGCTTTTTATGTTTTGATTTTCCTATCTTCATAGGAGTTCAACTTTGAGCTTTGTTTTCTGTTGACTAAAGCGCAGCTTATCGTTATGCTTTTCTTTAAAAGATTATTATTTCTTTGTTTGTTAAAGGTTGGGACAGGGAAGAGACAGAGCTCTGCAATACTTAAAAGACAATCCTGCTCTTCAAGATGAAATTGAGAAGGTTTGTTTTTGCGTAGACATGCTATACCACATAATTGCTCCAACAATTTTTCCTTTGTACGAGGCAATTAGTTGTCCATGTCCAATTTTTTAAACCAAAATAAAGAAAAATCTATGCTGATATTATTCTTTCGCCCTGGAAAATTTCTTTAGGTTAACTTTGAATGGATAATAATAATATGGTCCAGATCCTAAATAGTTTGGAGGGGCAGTTAATGCTTGTTTGTCATGTGTAGTGACAATTATATATTTTATCAAGACGTTGTACTTGAACAGTTTTGGAGTACCATGGTTGGTTCAATGTAATGTAATTAAGTCACTATTGTTTGTCTCTCGTATTCGAAGGCCATCTGTAACGTATGTGATTAAAATTGAAGTTAATTTGACTAGCCCATGGCCTAAACAGTTCATTTGCCTTTTGAAAATGCTCATTTCTCATGAAAACTCTGAACTTTTAAATGTATGGCAGATGGTGCAGACCACGCTGACTAGTGGAACTGTTCAAATGGGATTTCAATCCGTTAGAAAGCCTCTGCCGAATCAAGAAGAGGTACTTGAGGAGTTCGAATAACGAATAATATATACAACGATTAAGCAATAGCAACAGCAGAGATTACAAGCAGAAGCAACATTTCTTCTATGGAAGGGTGGGATGATAAACCTCCATAGATCCGGTCTGTGGTACATCTAGTGAATGCTGTTAGAAGCAAACAATTCCGCCTAATTTGTTAGTTAGATGCAAGCTAGATGTGATGAAGACAGTGAGAACTGGCTCCTCTGCTTCCAACCTCTGAAGACGACGTTTTGGATCATCCTTGAAAACTATTGAACTCCTTCGGTCTCGCTTAAGAGGTTGGTATAATTTGAAACCAAATCCTTGAGAAGTTGGTCTGAAAGTTCTGTTGTAATTTTTTCTGCAACCTCAGCTAGCATATTCGGATTTGTACTTATTTAGTGTAGAACATTTCTAATCTGTCAATACCATTGCTTGCCATCCAGATTTATACAATTGTTTTTCAGGGAAAGAAAAGTCATCAATTTTATCAGGAACTATAATCACCAGCTCTGAGGTACATTTTTTATTATATGAGGATAATGGTATTAAGCCTTCCATATTAGTTGAACATGAGGAGTTAGAAGTTAGTTTTTCATTACTTAAATCTTACTGTCATTTTGCTTGGGAGAGAGGAGCACAACCACATGAAAGAAAAGGACTCAGTTCCTTTTTATTTCCTTTTACTGTTGTTTTTGTTATTACTCTCACAACTTCATCCAACTTCAAGTTTCAAAGAAACCATCAGCTGAAAATTTTTGTATCAGGGTGCAGTAGCAAGTTTTGGGAGCTTTTAGAAGTCATTTGAAACA

mRNA sequence

ATGGAAGAAAGACCGACAAGAGAAGCCCATGGAGGGGTTGGGACTCTACAAACGAAAATCCCTCCTCGACGTACTGAAGGTGGTCTCCTCGATCAAAGACAGAAGAGACATGAGGTGTCGAGGCCATACAAGCAAGCTGAATTTGAAATTATCTTTGGAGAGGGAGTAAGTAAACTGGGCTGCATTTTAGATTGTGCTGAAATTATGGACGTTGTAGTGAAAAAGGGCTCGTGGTACAGTTACGGGGACCACAGGTTGGGACAGGGAAGAGACAGAGCTCTGCAATACTTAAAAGACAATCCTGCTCTTCAAGATGAAATTGAGAAGATGGTGCAGACCACGCTGACTAGTGGAACTGTTCAAATGGGATTTCAATCCGTTAGAAAGCCTCTGCCGAATCAAGAAGAGGTACTTGAGGAGTTCGAATAA

Coding sequence (CDS)

ATGGAAGAAAGACCGACAAGAGAAGCCCATGGAGGGGTTGGGACTCTACAAACGAAAATCCCTCCTCGACGTACTGAAGGTGGTCTCCTCGATCAAAGACAGAAGAGACATGAGGTGTCGAGGCCATACAAGCAAGCTGAATTTGAAATTATCTTTGGAGAGGGAGTAAGTAAACTGGGCTGCATTTTAGATTGTGCTGAAATTATGGACGTTGTAGTGAAAAAGGGCTCGTGGTACAGTTACGGGGACCACAGGTTGGGACAGGGAAGAGACAGAGCTCTGCAATACTTAAAAGACAATCCTGCTCTTCAAGATGAAATTGAGAAGATGGTGCAGACCACGCTGACTAGTGGAACTGTTCAAATGGGATTTCAATCCGTTAGAAAGCCTCTGCCGAATCAAGAAGAGGTACTTGAGGAGTTCGAATAA

Protein sequence

MEERPTREAHGGVGTLQTKIPPRRTEGGLLDQRQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLPNQEEVLEEFE
Homology
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BLAST of Spg016984 vs. NCBI nr
Match: XP_022981737.1 (DNA repair protein recA homolog 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 211.8 bits (538), Expect = 3.7e-51
Identity = 102/110 (92.73%), Postives = 107/110 (97.27%), Query Frame = 0 

Query: 33  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDR 92
           R ++ +VSRPYKQAEFEIIFGEGVSKLGCILDCAEIMD+VVKKGSWYSYGDHRLGQGRDR
Sbjct: 309 RVQKSKVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDIVVKKGSWYSYGDHRLGQGRDR 368

Query: 93  ALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLPNQEEVLEEFE 143
           ALQYLKDNPALQDEIEK VQTTLTSGTVQMGFQS+RKPLPNQEEVLEEFE
Sbjct: 369 ALQYLKDNPALQDEIEKTVQTTLTSGTVQMGFQSLRKPLPNQEEVLEEFE 418

[Close]
BLAST of Spg016984 vs. NCBI nr
Match: XP_023524459.1 (DNA repair protein recA homolog 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.1 bits (536), Expect = 6.4e-51
Identity = 101/110 (91.82%), Postives = 107/110 (97.27%), Query Frame = 0 

Query: 33  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDR 92
           R ++ +VSRPYKQAEFEIIFGEGVSKLGCILDCAEIMD+VVKKGSWYSYGDHRLGQGRDR
Sbjct: 309 RVQKSKVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDIVVKKGSWYSYGDHRLGQGRDR 368

Query: 93  ALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLPNQEEVLEEFE 143
           ALQYLK+NPALQDEIEK VQTTLTSGTVQMGFQS+RKPLPNQEEVLEEFE
Sbjct: 369 ALQYLKENPALQDEIEKTVQTTLTSGTVQMGFQSIRKPLPNQEEVLEEFE 418

[Close]
BLAST of Spg016984 vs. NCBI nr
Match: XP_022940951.1 (DNA repair protein recA homolog 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 209.5 bits (532), Expect = 1.9e-50
Identity = 100/110 (90.91%), Postives = 107/110 (97.27%), Query Frame = 0 

Query: 33  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDR 92
           R ++ +VSRPYKQAEFEIIFGEGVSKLGCILDCAEIMD+VVKKGSWYSYGDHRLGQGRDR
Sbjct: 309 RVQKSKVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDIVVKKGSWYSYGDHRLGQGRDR 368

Query: 93  ALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLPNQEEVLEEFE 143
           ALQYLK+NPALQ+EIEK VQTTLTSGTVQMGFQS+RKPLPNQEEVLEEFE
Sbjct: 369 ALQYLKENPALQEEIEKTVQTTLTSGTVQMGFQSIRKPLPNQEEVLEEFE 418

[Close]
BLAST of Spg016984 vs. NCBI nr
Match: KAG7037524.1 (DNA repair protein recA-like 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209.5 bits (532), Expect = 1.9e-50
Identity = 100/110 (90.91%), Postives = 107/110 (97.27%), Query Frame = 0 

Query: 33  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDR 92
           R ++ +VSRPYKQAEFEIIFGEGVSKLGCILDCAEIMD+VVKKGSWYSYGDHRLGQGRDR
Sbjct: 309 RVQKSKVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDIVVKKGSWYSYGDHRLGQGRDR 368

Query: 93  ALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLPNQEEVLEEFE 143
           ALQYLK+NPALQ+EIEK VQTTLTSGTVQMGFQS+RKPLPNQEEVLEEFE
Sbjct: 369 ALQYLKENPALQEEIEKTVQTTLTSGTVQMGFQSIRKPLPNQEEVLEEFE 418

[Close]
BLAST of Spg016984 vs. NCBI nr
Match: XP_038898980.1 (DNA repair protein recA homolog 1, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 207.2 bits (526), Expect = 9.2e-50
Identity = 99/110 (90.00%), Postives = 104/110 (94.55%), Query Frame = 0 

Query: 33  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDR 92
           R ++ +VSRPYKQAEFEIIFGEGV KLGCILDCAEIMD+V KKGSWYSYGDHRLGQGRDR
Sbjct: 310 RVQKSKVSRPYKQAEFEIIFGEGVGKLGCILDCAEIMDIVAKKGSWYSYGDHRLGQGRDR 369

Query: 93  ALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLPNQEEVLEEFE 143
           ALQYLKDNPALQDEIEK VQT LTSGTVQMGFQS+RKPLPNQEEVLEEFE
Sbjct: 370 ALQYLKDNPALQDEIEKTVQTMLTSGTVQMGFQSIRKPLPNQEEVLEEFE 419

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BLAST of Spg016984 vs. ExPASy Swiss-Prot
Match: Q39199 (DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-32
Identity = 65/88 (73.86%), Postives = 78/88 (88.64%), Query Frame = 0 

Query: 33  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDR 92
           R ++ +VSRPYKQAEFEI+FGEGVSKLGC+LDCAEIM+VVVKKGSWYSY D RLGQGR++
Sbjct: 323 RVQKSKVSRPYKQAEFEIMFGEGVSKLGCVLDCAEIMEVVVKKGSWYSYEDQRLGQGREK 382

Query: 93  ALQYLKDNPALQDEIEKMVQTTLTSGTV 121
           ALQ+L++NPALQDEIEK V+  +  G V
Sbjct: 383 ALQHLRENPALQDEIEKKVRLLMLDGEV 410

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BLAST of Spg016984 vs. ExPASy Swiss-Prot
Match: P48293 (Protein RecA OS=Arthrospira platensis OX=118562 GN=recA PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 9.3e-21
Identity = 40/85 (47.06%), Postives = 64/85 (75.29%), Query Frame = 0 

Query: 36  RHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQ 95
           +++V+ P++ AEF+IIFG+G+S +GC++D AE   V+ +KG+WYSY +  +GQGRDR + 
Sbjct: 251 KNKVAPPFRIAEFDIIFGQGISTIGCLIDLAEETGVIKRKGAWYSYNNENIGQGRDRTIT 310

Query: 96  YLKDNPALQDEIEKMVQTTLTSGTV 121
           Y+++NPA  +EI+K V+  L  G V
Sbjct: 311 YMQENPAFTEEIDKRVRAALAGGAV 335

[Close]
BLAST of Spg016984 vs. ExPASy Swiss-Prot
Match: B7JZS9 (Protein RecA OS=Rippkaea orientalis (strain PCC 8801) OX=41431 GN=recA PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.7e-20
Identity = 45/101 (44.55%), Postives = 72/101 (71.29%), Query Frame = 0 

Query: 36  RHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQ 95
           +++V+ P++ AEF+IIFG+G+S++GC+LD AE  DVV +KG+WYSY    + QGRD A++
Sbjct: 252 KNKVAPPFRIAEFDIIFGKGISRMGCMLDLAEQTDVVNRKGAWYSYNGENISQGRDNAVK 311

Query: 96  YLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLPNQEE 137
           YL+DNP + D IE+ V+  L  G++     ++ +   N+EE
Sbjct: 312 YLEDNPEVADTIERQVREKLELGSLNF---AISQTDDNEEE 349

[Close]
BLAST of Spg016984 vs. ExPASy Swiss-Prot
Match: B1WW59 (Protein RecA OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=recA PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.9e-20
Identity = 40/85 (47.06%), Postives = 66/85 (77.65%), Query Frame = 0 

Query: 36  RHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDRALQ 95
           +++V+ P++ AEF+IIFG+G+S++GC+LD AE  DVV++KG+WYSY    + QGRD A++
Sbjct: 252 KNKVAPPFRIAEFDIIFGQGISRMGCMLDLAEQSDVVLRKGAWYSYNGDNISQGRDNAVK 311

Query: 96  YLKDNPALQDEIEKMVQTTLTSGTV 121
           YL++NP + + IE+ V+  L  G++
Sbjct: 312 YLEENPKIAETIEQQVREKLELGSL 336

[Close]
BLAST of Spg016984 vs. ExPASy Swiss-Prot
Match: B2IWJ2 (Protein RecA OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=recA PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.0e-19
Identity = 44/110 (40.00%), Postives = 72/110 (65.45%), Query Frame = 0 

Query: 27  GGLLDQRQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRL 86
           G  +  +  +++V+ P++ AEF+IIFG+G+S LGC++D AE   ++++KG+WYSY    +
Sbjct: 242 GNRVKVKVAKNKVAPPFRIAEFDIIFGKGISTLGCVVDLAEETGIIIRKGAWYSYNGDNI 301

Query: 87  GQGRDRALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLPNQEE 137
            QGRD A++YL++ P   +EI+K+V+  L  G V +   SV K     EE
Sbjct: 302 SQGRDNAIKYLEEKPEFAEEIKKLVREKLDKGAV-VSANSVAKASEEDEE 350

[Close]
BLAST of Spg016984 vs. ExPASy TrEMBL
Match: A0A6J1IUU1 (DNA repair protein recA homolog 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111480803 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.8e-51
Identity = 102/110 (92.73%), Postives = 107/110 (97.27%), Query Frame = 0 

Query: 33  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDR 92
           R ++ +VSRPYKQAEFEIIFGEGVSKLGCILDCAEIMD+VVKKGSWYSYGDHRLGQGRDR
Sbjct: 309 RVQKSKVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDIVVKKGSWYSYGDHRLGQGRDR 368

Query: 93  ALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLPNQEEVLEEFE 143
           ALQYLKDNPALQDEIEK VQTTLTSGTVQMGFQS+RKPLPNQEEVLEEFE
Sbjct: 369 ALQYLKDNPALQDEIEKTVQTTLTSGTVQMGFQSLRKPLPNQEEVLEEFE 418

[Close]
BLAST of Spg016984 vs. ExPASy TrEMBL
Match: A0A6J1FJT7 (DNA repair protein recA homolog 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111446383 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 9.0e-51
Identity = 100/110 (90.91%), Postives = 107/110 (97.27%), Query Frame = 0 

Query: 33  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDR 92
           R ++ +VSRPYKQAEFEIIFGEGVSKLGCILDCAEIMD+VVKKGSWYSYGDHRLGQGRDR
Sbjct: 309 RVQKSKVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDIVVKKGSWYSYGDHRLGQGRDR 368

Query: 93  ALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLPNQEEVLEEFE 143
           ALQYLK+NPALQ+EIEK VQTTLTSGTVQMGFQS+RKPLPNQEEVLEEFE
Sbjct: 369 ALQYLKENPALQEEIEKTVQTTLTSGTVQMGFQSIRKPLPNQEEVLEEFE 418

[Close]
BLAST of Spg016984 vs. ExPASy TrEMBL
Match: A0A6J1C5R2 (DNA repair protein recA homolog 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008660 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.3e-49
Identity = 98/110 (89.09%), Postives = 104/110 (94.55%), Query Frame = 0 

Query: 33  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDR 92
           R ++ +VSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDV+VKKGSWYSYGDHRLGQGRDR
Sbjct: 309 RVQKSKVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVIVKKGSWYSYGDHRLGQGRDR 368

Query: 93  ALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLPNQEEVLEEFE 143
           ALQYLKDNP LQDEIEK VQT L SGTVQMGFQS+RKPLPNQEEVLEEF+
Sbjct: 369 ALQYLKDNPVLQDEIEKAVQTMLASGTVQMGFQSIRKPLPNQEEVLEEFQ 418

[Close]
BLAST of Spg016984 vs. ExPASy TrEMBL
Match: A0A0A0LBT0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G524580 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 7.9e-47
Identity = 96/110 (87.27%), Postives = 103/110 (93.64%), Query Frame = 0 

Query: 33  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDR 92
           R ++ +VSRPYKQAEFEIIFGEGVSKLGCILDCAEIM++VVKKGSWYSYGD RLGQGRDR
Sbjct: 309 RVQKSKVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMEIVVKKGSWYSYGDQRLGQGRDR 368

Query: 93  ALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLPNQEEVLEEFE 143
           ALQY KDNPALQDEIEK +QT LTSGTVQMGFQS+RKPLPNQ EVLEEFE
Sbjct: 369 ALQYFKDNPALQDEIEKTLQTMLTSGTVQMGFQSIRKPLPNQ-EVLEEFE 417

[Close]
BLAST of Spg016984 vs. ExPASy TrEMBL
Match: A0A5A7UCU6 (DNA repair protein recA-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G001200 PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.3e-46
Identity = 96/110 (87.27%), Postives = 103/110 (93.64%), Query Frame = 0 

Query: 33  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDR 92
           R ++ +VSRPYKQAEFEIIFGEGVSKLGCILDCAEIM++VVKKGSWYSYGD RLGQGRDR
Sbjct: 253 RVQKSKVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMEIVVKKGSWYSYGDQRLGQGRDR 312

Query: 93  ALQYLKDNPALQDEIEKMVQTTLTSGTVQMGFQSVRKPLPNQEEVLEEFE 143
           ALQYLKD PALQDEIEK +QT LTSGTVQMGFQS+RKPLPNQ EVLEEFE
Sbjct: 313 ALQYLKDTPALQDEIEKTLQTMLTSGTVQMGFQSIRKPLPNQ-EVLEEFE 361

[Close]
BLAST of Spg016984 vs. TAIR 10
Match: AT1G79050.1 (recA DNA recombination family protein )

HSP 1 Score: 141.0 bits (354), Expect = 7.5e-34
Identity = 65/88 (73.86%), Postives = 78/88 (88.64%), Query Frame = 0 

Query: 33  RQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDHRLGQGRDR 92
           R ++ +VSRPYKQAEFEI+FGEGVSKLGC+LDCAEIM+VVVKKGSWYSY D RLGQGR++
Sbjct: 323 RVQKSKVSRPYKQAEFEIMFGEGVSKLGCVLDCAEIMEVVVKKGSWYSYEDQRLGQGREK 382

Query: 93  ALQYLKDNPALQDEIEKMVQTTLTSGTV 121
           ALQ+L++NPALQDEIEK V+  +  G V
Sbjct: 383 ALQHLRENPALQDEIEKKVRLLMLDGEV 410

[Close]
BLAST of Spg016984 vs. TAIR 10
Match: AT2G19490.1 (recA DNA recombination family protein )

HSP 1 Score: 49.3 bits (116), Expect = 3.0e-06
Identity = 24/91 (26.37%), Postives = 52/91 (57.14%), Query Frame = 0 

Query: 25  TEGGLLDQRQKRHEVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMDVVVKKGSWYSYGDH 84
           T G  +  +  +++++ P++ A+FE+ FG+G+ K+  I+D +     + K G++Y+    
Sbjct: 293 TTGSQVSVKIVKNKLAPPFRTAQFELEFGKGICKITEIIDLSIKHKFIAKNGTFYNLNGK 352

Query: 85  RLGQGRDRALQYLKDNPALQDEIEKMVQTTL 116
               G++   ++LK N + Q+E+ K +Q  L
Sbjct: 353 NY-HGKEALKRFLKQNESDQEELMKKLQDKL 382

The following BLAST results are available for this feature:
BLAST of Spg016984 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022981737.13.7e-5192.73DNA repair protein recA homolog 1, chloroplastic [Cucurbita maxima][more]
XP_023524459.16.4e-5191.82DNA repair protein recA homolog 1, chloroplastic [Cucurbita pepo subsp. pepo][more]
XP_022940951.11.9e-5090.91DNA repair protein recA homolog 1, chloroplastic [Cucurbita moschata][more]
KAG7037524.11.9e-5090.91DNA repair protein recA-like 1, chloroplastic [Cucurbita argyrosperma subsp. arg... [more]
XP_038898980.19.2e-5090.00DNA repair protein recA homolog 1, chloroplastic isoform X1 [Benincasa hispida][more]
BLAST of Spg016984 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q391991.1e-3273.86DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
P482939.3e-2147.06Protein RecA OS=Arthrospira platensis OX=118562 GN=recA PE=3 SV=1[more]
B7JZS92.7e-2044.55Protein RecA OS=Rippkaea orientalis (strain PCC 8801) OX=41431 GN=recA PE=3 SV=1[more]
B1WW597.9e-2047.06Protein RecA OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=r... [more]
B2IWJ21.0e-1940.00Protein RecA OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=r... [more]
BLAST of Spg016984 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IUU11.8e-5192.73DNA repair protein recA homolog 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1FJT79.0e-5190.91DNA repair protein recA homolog 1, chloroplastic OS=Cucurbita moschata OX=3662 G... [more]
A0A6J1C5R21.3e-4989.09DNA repair protein recA homolog 1, chloroplastic OS=Momordica charantia OX=3673 ... [more]
A0A0A0LBT07.9e-4787.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G524580 PE=3 SV=1[more]
A0A5A7UCU61.3e-4687.27DNA repair protein recA-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
BLAST of Spg016984 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G79050.17.5e-3473.86recA DNA recombination family protein [more]
AT2G19490.13.0e-0626.37recA DNA recombination family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013765DNA recombination and repair protein RecAPRINTSPR00142RECAcoord: 32..61
score: 37.28
coord: 86..103
score: 48.21
IPR013765DNA recombination and repair protein RecAPANTHERPTHR45900RECAcoord: 36..135
NoneNo IPR availableGENE3D3.30.250.10coord: 57..134
e-value: 6.1E-21
score: 76.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41
NoneNo IPR availablePANTHERPTHR45900:SF1MITOCHONDRIAL DNA REPAIR PROTEIN RECA HOMOLOGcoord: 36..135
IPR023400DNA recombination and repair protein RecA, C-terminalSUPERFAMILY54752RecA protein, C-terminal domaincoord: 57..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg016984.1Spg016984.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
molecular_function GO:0005524 ATP binding
molecular_function GO:0008094 ATP-dependent activity, acting on DNA
molecular_function GO:0003697 single-stranded DNA binding