Spg016964 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg016964
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	pentatricopeptide repeat-containing protein At1g55630-like
Location	scaffold9: 45665915 .. 45667189 (-)
RNA-Seq Expression	Spg016964
Synteny	Spg016964

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTCTTCACCGCCTCTAAGTTCGCGAATAGTCTGCAGATTTTCAACTTCTTTTATTTTGCGTCGAACAATTTGGAATCGGAGATTTGGTAGTGATGATGGCTTTGAGTCTGTATCTGTTGTGGAACCGTTTAAGAAGGGGTTGAAAAAATCAGAGCTTGATTACTTTACGGATGAAAATTCAGATTCTTGTGAGTTTGGGAGTCGTAGATGGGATAATTTGTCGGTGAAAATGGGTTTGCTTGAGGATGCAAAAACTGATGCTGAAAAAGTTCTTGAGGTTCTCAAATAGGATGGTCCTGGATTTGACACATTATTGGCTTCGGATGAACTGCAACTAAAGGTCTCAGGCGCTCTTGTTAGGGAAGTTCTGAGGGGGATTTTGAGGTATAAATGTTCTAAACAAAACTCTGTGTGCAAAATTGGGGTACAACCGTACAAGTTTTTCGTGTGGTCTGGTAAGGTCGAGAATTACAGACACGAGGCGAGCTCGTATCATATGATCATGAAAATATTTGCTGAATGTGAGAAGTTCAAGGCTATATGGAGGTTAGTTGATGAGATGACTGAGAAAGGGTACCCTGTTACTGCAAGGACATTTACGTTATTAACATGTACTTGTGGTGATGCAGGCTTGGCTAGGAAAGTTGTTGAGAGGTTTATCAAATGCCATTCTCCATGCACTTCTTGTTATAAAACAGTACAAGTTGATTGAATGGGTGTATCAGCAAATGCTGCTTGAAAATTTTGCGTAGGTATTTATCTACGTCCCTTTTCTGTCCACTTTTTTTTACCTTAAATAATTTTTTCGTTTAGAATTTTTTAAATCAGTATATACTATACAAAGCATATAGGCTGTTTGTATTTCCAGCAAATTCAAAACACCAATGGCGGATTGGGTAATATACTTCACTACAACAATTTTAAGCTAAAAATTCATCAAAACAAACTATAATCTGCAATTATAAATATGTAGAGATTGTCCTATCTCTTCTAGTAATCAAAGTAACTTCTACTTTCTTTCATTAGACAGAGCCCTCACTTGAATTGTTTCCGTCAGTCGGTTTCATTTGAAGAATGGGAAAATACCTGTAAAAAGAGAGCAAAAACACCGTGCAACCCGCTGCTAAAGTTCGAGGGGAAAGGAGAAGGCGACGCCGGCACTGAGCAGCAGAGAGACGGTGGCGCCGGCAACGACACTGAACCGGAGAGAGGCGGCGGCGAGGTGGGAGGGGCAGCCGGAGTCAACCACGTGAGAATGAGAGGAAGATGA

mRNA sequence

ATGAAGTCTTCACCGCCTCTAAGTTCGCGAATAGTCTGCAGATTTTCAACTTCTTTTATTTTGCGTCGAACAATTTGGAATCGGAGATTTGGTAGTGATGATGGCTTTGAGTCTGTATCTGTTGTGGAACCGTTTAAGAAGGGGTTGAAAAAATCAGAGCTTGATTACTTTACGGATGAAAATTCAGATTCTTGTGAGTTTGGGAGTCGTAGATGGGATAATTTGTCGGTGAAAATGGGTTTGCTTGAGGATGCAAAAACTGATGCTGAAAAAGTTCTTGAGGTCGAGAATTACAGACACGAGGCGAGCTCGTATCATATGATCATGAAAATATTTGCTGAATGTGAGAAGTTCAAGGCTATATGGAGGTTAGTTGATGAGATGACTGAGAAAGGGTACCCTGTTACTGCAAGGACATTTACGTTATTAACATGTACTTGTGGTGATGCAGGCTTGGCTAGGAAAGTTGTTGAGAGACAGAGCCCTCACTTGAATTGTTTCCGTCAGTCGGTTTCATTTGAAGAATGGGAAAATACCTGTAAAAAGAGAGCAAAAACACCGTGCAACCCGCTGCTAAAGTTCGAGGGGAAAGGAGAAGGCGACGCCGGCACTGAGCAGCAGAGAGACGGTGGCGCCGGCAACGACACTGAACCGGAGAGAGGCGGCGGCGAGGTGGGAGGGGCAGCCGGAGTCAACCACGTGAGAATGAGAGGAAGATGA

Coding sequence (CDS)

ATGAAGTCTTCACCGCCTCTAAGTTCGCGAATAGTCTGCAGATTTTCAACTTCTTTTATTTTGCGTCGAACAATTTGGAATCGGAGATTTGGTAGTGATGATGGCTTTGAGTCTGTATCTGTTGTGGAACCGTTTAAGAAGGGGTTGAAAAAATCAGAGCTTGATTACTTTACGGATGAAAATTCAGATTCTTGTGAGTTTGGGAGTCGTAGATGGGATAATTTGTCGGTGAAAATGGGTTTGCTTGAGGATGCAAAAACTGATGCTGAAAAAGTTCTTGAGGTCGAGAATTACAGACACGAGGCGAGCTCGTATCATATGATCATGAAAATATTTGCTGAATGTGAGAAGTTCAAGGCTATATGGAGGTTAGTTGATGAGATGACTGAGAAAGGGTACCCTGTTACTGCAAGGACATTTACGTTATTAACATGTACTTGTGGTGATGCAGGCTTGGCTAGGAAAGTTGTTGAGAGACAGAGCCCTCACTTGAATTGTTTCCGTCAGTCGGTTTCATTTGAAGAATGGGAAAATACCTGTAAAAAGAGAGCAAAAACACCGTGCAACCCGCTGCTAAAGTTCGAGGGGAAAGGAGAAGGCGACGCCGGCACTGAGCAGCAGAGAGACGGTGGCGCCGGCAACGACACTGAACCGGAGAGAGGCGGCGGCGAGGTGGGAGGGGCAGCCGGAGTCAACCACGTGAGAATGAGAGGAAGATGA

Protein sequence

MKSSPPLSSRIVCRFSTSFILRRTIWNRRFGSDDGFESVSVVEPFKKGLKKSELDYFTDENSDSCEFGSRRWDNLSVKMGLLEDAKTDAEKVLEVENYRHEASSYHMIMKIFAECEKFKAIWRLVDEMTEKGYPVTARTFTLLTCTCGDAGLARKVVERQSPHLNCFRQSVSFEEWENTCKKRAKTPCNPLLKFEGKGEGDAGTEQQRDGGAGNDTEPERGGGEVGGAAGVNHVRMRGR

Homology

[Close]

BLAST of Spg016964 vs. NCBI nr
Match: XP_022141309.1 (pentatricopeptide repeat-containing protein At1g55630-like [Momordica charantia])

HSP 1 Score: 225.7 bits (574), Expect = 4.2e-55
Identity = 124/218 (56.88%), Postives = 137/218 (62.84%), Query Frame = 0


Query: 1   MKSSPPLSSRIVCRFSTSFILRRTIWNRRFGSDDGFESVSVVEPFKKGLKKSELDYFTDE 60
           M S   LSSRIVCRFSTSFI+R T+WNR F SDDGFE   VVEPFK+  K+SEL  FTDE
Sbjct: 1   MNSISLLSSRIVCRFSTSFIVRLTVWNRSFSSDDGFE--CVVEPFKRVCKRSELGCFTDE 60

Query: 61  NSDSCEFGSRRWDNLSVKMGLLEDAKTDAEKVLE-------------------------- 120
           NSDS EFG RRWD+ SV+ G LEDA++DAEKVLE                          
Sbjct: 61  NSDSSEFGGRRWDDFSVRRGFLEDARSDAEKVLEVLKQDGPGFDTILALDELQIKVSGFL 120

Query: 121 ---------------------------------VENYRHEASSYHMIMKIFAECEKFKAI 160
                                            VENYRH ASSYH+IMKIFA+CE+FKA+
Sbjct: 121 VREVLMRILRSINFVDKTQCAKLGYKFFVWSGKVENYRHTASSYHIIMKIFAQCEEFKAM 180

[Close]

BLAST of Spg016964 vs. NCBI nr
Match: XP_023552266.1 (pentatricopeptide repeat-containing protein At1g55630-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023552267.1 pentatricopeptide repeat-containing protein At1g55630-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023552268.1 pentatricopeptide repeat-containing protein At1g55630-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 208.0 bits (528), Expect = 9.1e-50
Identity = 121/219 (55.25%), Postives = 133/219 (60.73%), Query Frame = 0


Query: 1   MKSSPPLSSRIVCR-FSTSFILRRTIWNRRFGSDDGFESVSVVEPFKKGLKKSELDYFTD 60
           M S   +SSRIVCR FSTSFI+RRTI NR FG DD FE   VVEP KK L+ SE  YFTD
Sbjct: 1   MNSLSLVSSRIVCRLFSTSFIVRRTICNRSFGGDDRFE--FVVEPNKKRLEGSEFGYFTD 60

Query: 61  ENSDSCEFGSRRWDNLSVKMGLLEDAKTDAEKVLE------------------------- 120
           ENSDSCE GSRR D+LS++ G LE AK  AEKV+E                         
Sbjct: 61  ENSDSCEIGSRRGDDLSMRRGFLEGAKIGAEKVIEILKQDGPGFDTLLALDELQLQVSGV 120

Query: 121 ----------------------------------VENYRHEASSYHMIMKIFAECEKFKA 160
                                             VENYRH ASSYHM+MKIFAECE+FKA
Sbjct: 121 LVREVLKGILRSINVLNKTQCAKLGYKFFVWSSKVENYRHTASSYHMVMKIFAECEEFKA 180

[Close]

BLAST of Spg016964 vs. NCBI nr
Match: XP_023552269.1 (pentatricopeptide repeat-containing protein At1g55630-like isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 208.0 bits (528), Expect = 9.1e-50
Identity = 121/219 (55.25%), Postives = 133/219 (60.73%), Query Frame = 0


Query: 1   MKSSPPLSSRIVCR-FSTSFILRRTIWNRRFGSDDGFESVSVVEPFKKGLKKSELDYFTD 60
           M S   +SSRIVCR FSTSFI+RRTI NR FG DD FE   VVEP KK L+ SE  YFTD
Sbjct: 1   MNSLSLVSSRIVCRLFSTSFIVRRTICNRSFGGDDRFE--FVVEPNKKRLEGSEFGYFTD 60

Query: 61  ENSDSCEFGSRRWDNLSVKMGLLEDAKTDAEKVLE------------------------- 120
           ENSDSCE GSRR D+LS++ G LE AK  AEKV+E                         
Sbjct: 61  ENSDSCEIGSRRGDDLSMRRGFLEGAKIGAEKVIEILKQDGPGFDTLLALDELQLQVSGV 120

Query: 121 ----------------------------------VENYRHEASSYHMIMKIFAECEKFKA 160
                                             VENYRH ASSYHM+MKIFAECE+FKA
Sbjct: 121 LVREVLKGILRSVNVLNKTQCAKSGYKFFVWSGKVENYRHTASSYHMVMKIFAECEEFKA 180

[Close]

BLAST of Spg016964 vs. NCBI nr
Match: XP_038878012.1 (pentatricopeptide repeat-containing protein At3g60050-like [Benincasa hispida])

HSP 1 Score: 201.4 bits (511), Expect = 8.5e-48
Identity = 116/219 (52.97%), Postives = 130/219 (59.36%), Query Frame = 0


Query: 1   MKSSPPLSSRIVCR-FSTSFILRRTIWNRRFGSDDGFESVSVVEPFKKGLKKSELDYFTD 60
           M S   +SSRIVCR F+TSFI+ RTIWNR FGSDD FE   VVEP KKG++ SE  YF D
Sbjct: 1   MNSLSLVSSRIVCRLFTTSFIVGRTIWNRNFGSDDRFE--FVVEPHKKGMEGSEFGYFAD 60

Query: 61  ENSDSCEFGSRRWDNLSVKMGLLEDAKTDAEKVLE------------------------- 120
           ENSDS +  S R D  S++ G LEDAKTDAEKV+E                         
Sbjct: 61  ENSDSSDIESGRPDVFSLRRGFLEDAKTDAEKVIEILKQDGPGFDTFLALDELQLQVSGV 120

Query: 121 ----------------------------------VENYRHEASSYHMIMKIFAECEKFKA 160
                                             VENYRH   SYH+IMKIFAECE+FKA
Sbjct: 121 LVGEVLKGILKSTSVLNKTQCAKLGYKFFVWTGKVENYRHTVKSYHLIMKIFAECEEFKA 180

[Close]

BLAST of Spg016964 vs. NCBI nr
Match: XP_022922468.1 (pentatricopeptide repeat-containing protein At1g55630-like [Cucurbita moschata])

HSP 1 Score: 201.1 bits (510), Expect = 1.1e-47
Identity = 118/219 (53.88%), Postives = 131/219 (59.82%), Query Frame = 0


Query: 1   MKSSPPLSSRIVCR-FSTSFILRRTIWNRRFGSDDGFESVSVVEPFKKGLKKSELDYFTD 60
           M S   +SSRIVCR  STSFI+RR I NR F  DD FE   VVEP KK L+ SE  YFTD
Sbjct: 1   MNSLSLVSSRIVCRLLSTSFIVRRAICNRSFSGDDRFE--FVVEPNKKRLEGSEFGYFTD 60

Query: 61  ENSDSCEFGSRRWDNLSVKMGLLEDAKTDAEKVLE------------------------- 120
           EN DSCE GSRR D+LS++   LE+AKTDAEKV+E                         
Sbjct: 61  ENLDSCEIGSRREDDLSMRKVFLENAKTDAEKVIEILKQDGPGFDTLLALDELQLQVSGV 120

Query: 121 ----------------------------------VENYRHEASSYHMIMKIFAECEKFKA 160
                                             VENYRH ASSYHM+MKIFAECE+FKA
Sbjct: 121 LVREVLKGILRSVNVLNKTQCAKLGYKFFVWSSKVENYRHTASSYHMVMKIFAECEEFKA 180

[Close]

BLAST of Spg016964 vs. ExPASy Swiss-Prot
Match: Q9M1D8 (Pentatricopeptide repeat-containing protein At3g60050 OS=Arabidopsis thaliana OX=3702 GN=At3g60050 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-18
Identity = 40/64 (62.50%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 94  EVENYRHEASSYHMIMKIFAECEKFKAIWRLVDEMTEKGYPVTARTFTLLTCTCGDAGLA 153
           E E +RH  +SYH++MKIFAEC ++KA+WRLVDEM + G+P TARTF LL C+CG+AGLA
Sbjct: 141 EQECFRHTVNSYHLLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLA 200

Query: 154 RKVV 158
           ++ V
Sbjct: 201 KQAV 204

[Close]

BLAST of Spg016964 vs. ExPASy Swiss-Prot
Match: Q7X6A5 (Pentatricopeptide repeat-containing protein At1g55630 OS=Arabidopsis thaliana OX=3702 GN=At1g55630 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-18
Identity = 42/64 (65.62%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 96  ENYRHEASSYHMIMKIFAECEKFKAIWRLVDEMTEKGYPVTARTFTLLTCTCGDAGLARK 155
           EN+RH A+ YH++MKIFAEC ++KA+ RL+DEM + GYP TA TF LL CTCG+AGLAR 
Sbjct: 146 ENFRHTANCYHLLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLICTCGEAGLARD 205

Query: 156 VVER 160
           VVE+
Sbjct: 206 VVEQ 209

[Close]

BLAST of Spg016964 vs. ExPASy TrEMBL
Match: A0A6J1CI85 (pentatricopeptide repeat-containing protein At1g55630-like OS=Momordica charantia OX=3673 GN=LOC111011735 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 2.0e-55
Identity = 124/218 (56.88%), Postives = 137/218 (62.84%), Query Frame = 0


Query: 1   MKSSPPLSSRIVCRFSTSFILRRTIWNRRFGSDDGFESVSVVEPFKKGLKKSELDYFTDE 60
           M S   LSSRIVCRFSTSFI+R T+WNR F SDDGFE   VVEPFK+  K+SEL  FTDE
Sbjct: 1   MNSISLLSSRIVCRFSTSFIVRLTVWNRSFSSDDGFE--CVVEPFKRVCKRSELGCFTDE 60

Query: 61  NSDSCEFGSRRWDNLSVKMGLLEDAKTDAEKVLE-------------------------- 120
           NSDS EFG RRWD+ SV+ G LEDA++DAEKVLE                          
Sbjct: 61  NSDSSEFGGRRWDDFSVRRGFLEDARSDAEKVLEVLKQDGPGFDTILALDELQIKVSGFL 120

Query: 121 ---------------------------------VENYRHEASSYHMIMKIFAECEKFKAI 160
                                            VENYRH ASSYH+IMKIFA+CE+FKA+
Sbjct: 121 VREVLMRILRSINFVDKTQCAKLGYKFFVWSGKVENYRHTASSYHIIMKIFAQCEEFKAM 180

[Close]

BLAST of Spg016964 vs. ExPASy TrEMBL
Match: A0A6J1E6P6 (pentatricopeptide repeat-containing protein At1g55630-like OS=Cucurbita moschata OX=3662 GN=LOC111430470 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 5.4e-48
Identity = 118/219 (53.88%), Postives = 131/219 (59.82%), Query Frame = 0


Query: 1   MKSSPPLSSRIVCR-FSTSFILRRTIWNRRFGSDDGFESVSVVEPFKKGLKKSELDYFTD 60
           M S   +SSRIVCR  STSFI+RR I NR F  DD FE   VVEP KK L+ SE  YFTD
Sbjct: 1   MNSLSLVSSRIVCRLLSTSFIVRRAICNRSFSGDDRFE--FVVEPNKKRLEGSEFGYFTD 60

Query: 61  ENSDSCEFGSRRWDNLSVKMGLLEDAKTDAEKVLE------------------------- 120
           EN DSCE GSRR D+LS++   LE+AKTDAEKV+E                         
Sbjct: 61  ENLDSCEIGSRREDDLSMRKVFLENAKTDAEKVIEILKQDGPGFDTLLALDELQLQVSGV 120

Query: 121 ----------------------------------VENYRHEASSYHMIMKIFAECEKFKA 160
                                             VENYRH ASSYHM+MKIFAECE+FKA
Sbjct: 121 LVREVLKGILRSVNVLNKTQCAKLGYKFFVWSSKVENYRHTASSYHMVMKIFAECEEFKA 180

[Close]

BLAST of Spg016964 vs. ExPASy TrEMBL
Match: A0A6J1JDA6 (pentatricopeptide repeat-containing protein At1g55630-like OS=Cucurbita maxima OX=3661 GN=LOC111483452 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.2e-47
Identity = 118/219 (53.88%), Postives = 129/219 (58.90%), Query Frame = 0


Query: 1   MKSSPPLSSRIVCR-FSTSFILRRTIWNRRFGSDDGFESVSVVEPFKKGLKKSELDYFTD 60
           M S   +SSRIVCR    SFI+RR I NR FG DD FE   VVEP KK L+ SE  YFTD
Sbjct: 1   MNSLSLVSSRIVCRLLPPSFIVRRAICNRSFGGDDRFE--FVVEPNKKRLEGSEFGYFTD 60

Query: 61  ENSDSCEFGSRRWDNLSVKMGLLEDAKTDAEKVLE------------------------- 120
           ENSDSCE GSRR D+LS++ G  E AK DAEKV+E                         
Sbjct: 61  ENSDSCEIGSRRGDDLSMRRGFPEGAKIDAEKVIEILKQDGPGFDTLLALDELQLQVSGV 120

Query: 121 ----------------------------------VENYRHEASSYHMIMKIFAECEKFKA 160
                                             VENYRH ASSYHMIMKIFAECE+FKA
Sbjct: 121 LVREVLKGILRSVNVLNKTQCAKLGYKFFLWSGKVENYRHTASSYHMIMKIFAECEEFKA 180

[Close]

BLAST of Spg016964 vs. ExPASy TrEMBL
Match: A0A6J1FZ63 (pentatricopeptide repeat-containing protein At1g55630-like OS=Cucurbita moschata OX=3662 GN=LOC111449239 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.5e-45
Identity = 114/213 (53.52%), Postives = 127/213 (59.62%), Query Frame = 0


Query: 7   LSSRIVCRF-STSFILRRTIWNRRFGSDDGFESVSVVEPFKKGLKKSELDYFTDENSDSC 66
           LS+RIVCR  S+SFI+RRTIWNR FGSDD FE   V+EP+KKGL++SE          SC
Sbjct: 7   LSARIVCRLVSSSFIVRRTIWNRSFGSDDRFE--FVMEPYKKGLERSE----------SC 66

Query: 67  EFGSRRWDNLSVKMGLLEDAKTDAEKVLE------------------------------- 126
           EF S R D+LSV+ G LED+KTDA KVLE                               
Sbjct: 67  EFESLRCDDLSVRRGFLEDSKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSGVLVREVL 126

Query: 127 ----------------------------VENYRHEASSYHMIMKIFAECEKFKAIWRLVD 160
                                       VEN+ H A SYHMIMKIFAECE+FKA+WRLVD
Sbjct: 127 RGILRSINVLNKTQCAKLGYKFFVWSGKVENFNHTAGSYHMIMKIFAECEEFKAMWRLVD 186

[Close]

BLAST of Spg016964 vs. ExPASy TrEMBL
Match: A0A6J1HY31 (pentatricopeptide repeat-containing protein At1g55630-like OS=Cucurbita maxima OX=3661 GN=LOC111467699 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.6e-44
Identity = 113/213 (53.05%), Postives = 127/213 (59.62%), Query Frame = 0


Query: 7   LSSRIVCRF-STSFILRRTIWNRRFGSDDGFESVSVVEPFKKGLKKSELDYFTDENSDSC 66
           LS+RIV R  S SFI+RRTIWNR FGSDD FE   V+EP+KKGL++SE          SC
Sbjct: 7   LSTRIVWRLVSNSFIVRRTIWNRSFGSDDRFE--FVMEPYKKGLERSE----------SC 66

Query: 67  EFGSRRWDNLSVKMGLLEDAKTDAEKVLE------------------------------- 126
           EF S R+D+LSV+ G LED+KTDA KVLE                               
Sbjct: 67  EFESLRYDDLSVRRGFLEDSKTDAGKVLEVLKQDGPGFDTLVALDELQLKVSGVLVREVL 126

Query: 127 ----------------------------VENYRHEASSYHMIMKIFAECEKFKAIWRLVD 160
                                       VEN+ H ASSYH+IMKIFAECE+FKA+WRLVD
Sbjct: 127 RGILRSINVLDKTQCAKLGYKFFVWSGKVENFNHTASSYHLIMKIFAECEEFKAMWRLVD 186

[Close]

BLAST of Spg016964 vs. TAIR 10
Match: AT1G55630.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 95.1 bits (235), Expect = 8.0e-20
Identity = 42/64 (65.62%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 96  ENYRHEASSYHMIMKIFAECEKFKAIWRLVDEMTEKGYPVTARTFTLLTCTCGDAGLARK 155
           EN+RH A+ YH++MKIFAEC ++KA+ RL+DEM + GYP TA TF LL CTCG+AGLAR 
Sbjct: 146 ENFRHTANCYHLLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLICTCGEAGLARD 205

Query: 156 VVER 160
           VVE+
Sbjct: 206 VVEQ 209

[Close]

BLAST of Spg016964 vs. TAIR 10
Match: AT3G60050.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 95.1 bits (235), Expect = 8.0e-20
Identity = 40/64 (62.50%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 94  EVENYRHEASSYHMIMKIFAECEKFKAIWRLVDEMTEKGYPVTARTFTLLTCTCGDAGLA 153
           E E +RH  +SYH++MKIFAEC ++KA+WRLVDEM + G+P TARTF LL C+CG+AGLA
Sbjct: 141 EQECFRHTVNSYHLLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLA 200

Query: 154 RKVV 158
           ++ V
Sbjct: 201 KQAV 204

The following BLAST results are available for this feature:

BLAST of Spg016964 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141309.1	4.2e-55	56.88	pentatricopeptide repeat-containing protein At1g55630-like [Momordica charantia]	[more]
XP_023552266.1	9.1e-50	55.25	pentatricopeptide repeat-containing protein At1g55630-like isoform X1 [Cucurbita...	[more]
XP_023552269.1	9.1e-50	55.25	pentatricopeptide repeat-containing protein At1g55630-like isoform X4 [Cucurbita...	[more]
XP_038878012.1	8.5e-48	52.97	pentatricopeptide repeat-containing protein At3g60050-like [Benincasa hispida]	[more]
XP_022922468.1	1.1e-47	53.88	pentatricopeptide repeat-containing protein At1g55630-like [Cucurbita moschata]	[more]

BLAST of Spg016964 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1D8	1.1e-18	62.50	Pentatricopeptide repeat-containing protein At3g60050 OS=Arabidopsis thaliana OX...	[more]
Q7X6A5	1.1e-18	65.63	Pentatricopeptide repeat-containing protein At1g55630 OS=Arabidopsis thaliana OX...	[more]

BLAST of Spg016964 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CI85	2.0e-55	56.88	pentatricopeptide repeat-containing protein At1g55630-like OS=Momordica charanti...	[more]
A0A6J1E6P6	5.4e-48	53.88	pentatricopeptide repeat-containing protein At1g55630-like OS=Cucurbita moschata...	[more]
A0A6J1JDA6	1.2e-47	53.88	pentatricopeptide repeat-containing protein At1g55630-like OS=Cucurbita maxima O...	[more]
A0A6J1FZ63	2.5e-45	53.52	pentatricopeptide repeat-containing protein At1g55630-like OS=Cucurbita moschata...	[more]
A0A6J1HY31	1.6e-44	53.05	pentatricopeptide repeat-containing protein At1g55630-like OS=Cucurbita maxima O...	[more]

BLAST of Spg016964 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55630.1	8.0e-20	65.63	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G60050.1	8.0e-20	62.50	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 75..172 e-value: 8.7E-7 score: 30.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..239
None	No IPR available	PANTHER	PTHR47942	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 95..159
None	No IPR available	PANTHER	PTHR47942:SF3	OS10G0506000 PROTEIN	coord: 95..159
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 101..135 score: 8.681407

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg016964.1	Spg016964.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding