Spg016959 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg016959
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein PAT1 homolog 1
Location	scaffold9: 40027096 .. 40030084 (+)
RNA-Seq Expression	Spg016959
Synteny	Spg016959

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTAAAATTCAAAGACTAAATTGTTAGGAAAGTTTAGTGATTTTTAACCTTAAGAAAAAACAAATCTACTACATTGCAACACAAGAAAAAGCTCAGGTATTTCAGATATTTACAAATTACAGTTTTTTGTTTTTTGTTTGAAAAATTATACAAATTACAGTTAAAGCAAATATAAATAGAAAAACAAATGGTTTAAAAAAAGGAATTTCCAGGACGAACGAACTACTGTTATGATTTGTAGAAAATTAAGAAACGAATAAACAAATTTATTTAAAAAGAAAAAGAAAAAAGAAAAAAAGAAAAAAAGAAGAAAGAAGAAAGAGGACCCATCTTTTTCAATTGTCCTGTTAAAATCCCCACTAATCGTTATCTCTTTTTAGGGTTCCCAATTTTGGTTTCTCTCTCCGATCCAATTTCAATTCATTCATTCAACCCTTAAAAAGCCCTCACTGACACAGCGAAAAGCAAGCTCAATCCATGAGGACGACACACTAGTATTACTCTACCACCAACTGTACATATTTTTCCACCCTATTTTCATCTTCCATTACCGCTCAAACCCTAGGATTTTGACCTGTTAGGGTTTTTAATTTCTCTGTTTTTTCATCCTCTTTGGTTTGGACTCGGATCCTATTTCGTTTCGGCGCAGTTGTGTTTGTTTTTTTTGACAATCGAGGTTGAGATTCGATTTCCATGTTCTTCTTGCTCGTCGTATCGACTAAATTGAGTCGTCGATAATGGATGGTTTCGGTAACGGAGCTAGAGTTCAAGTTGCGTCTACATCCGAGGATCTCAAGCGTTTTGGAGCTAATAATAATTCAACGGGTACGGTTTTTGCTTTCTTTTTTTTTTTGGCCACTCATGCAATTTCTATGGCTTTATGCTGTTTTTGTCTCGAAACCTTGTTACTTCAGATCCATTCTGTTTGAACTTCTTTTTAGTTGTTTGGATGAAGTCGGTGGTTGAGAAATTTGAGCTCGAATGGTGGTAGTGGTTGTGGCTGATGATTGTCTATTAGTTGTGTTCTAGAATCTTCTGAAGGATGTGGGGATTTTGTTCTCTTCTTGCTGGGATGGAATACGGCTAATTGTCAAGAGTTAAGTCGATAATTATATGGTTGCGGTCGATGGCAGTGGTCTGCGATGGCTCTCAATTTTCTACCTAGGAGTAATTAGTATTGTCTTTTAGATATTCATTGAAGCTACCGGCTTGTGTTTATAGATGAGGTCATATGTGTTCTTGCAGTAGCTGGCTGCATTTAGTAATTATCGTTTCCTTTTTCTTTTTAATTTTCGGAACTTCACCGGAAGATTGGGGAGTGAACTATAGGGGTGGTTCATTTGATTATTTTTTTAGTACAACAAATATGGGGTGGGATTTTGATCCTTTAACCTCTCTGGGAAGGAGTAGACGTCTTAACTTCCGAGCCATGTTCATGTTAGCAGCGGTTTATTTGATTCTTTAAGATAACTATTGATGAATCGCGTTTTTCAGGCGTTTCATTGGTTGTTTTATTTGTTTGGGTTCTTGGATTTCCTTCATTTATTTGTTATTAGGTCTGAAACACGTTCTGATCTCTTATTTTATAATGAGATGCAATCATTGTGATTTAATTTTCAATGCTGCAGAGAATGCTCTATTTGATGCATCACAGTATGCATTTTTCGGCAAGGATGTCATGGAGGAGGTTGAGTTAGGGGGATTAGAAGATGAAGAGGATGATACACTTGCTGCTGGGATTGATGAGGAGGAGTTTTTGTTTGATAAGGAGGTATCCATTATTTCCTTTGTTCTATACAGTTCTGCTCCTCTTTTTAGCTGGATGGGGTTTTGCATTTTAAAAAACGTTGGTAGTTGCTTATGGTTGACTAGAAGTCCAAGTTCAATCCTGTGGCTCTACAGGTTACAAAAATTTTAAATTTCAAAATCACCCAACAGAAATTGGATCTCAAAATTTTTTATTTGACTGCAGTTTTTTTGGGTGCTTATTCTACGAGATTATTGTGTGATTGTGAACTTGAAGTCTTTGCATCATCTCCATTTTCCTTTTGATGAATAAATTGATCATCAATAAGTGGACGGGGGGAGGGGGGGATCATATTGTTGGCAACTAAGAAAGGAGGGAAGTGATAAAAAATTTACGAGAAAAATGGTAAAGAGCTCAAACCCCTAATATTTGATGCCCAAATAGCTTGTTCTGGTTTCTTTCCAAGCAAATATTCTACAAAACACCAATAAAACAAACTTGCTAGCTTGAAAGAAATTTGAATAATTGTCCAAGAACTCATTTGTCCTGGAGCATGAAAAGTATGTCCAAGTTGGAGGTTCGATCCCCTTCACCTCACTAGTTGTGTTACTATGGGACCCTTCTCCTTGATATTTCTTCATTTGTACCATCTTTCCTCCTGGAGGCTTCATCAGAAGTGGCCTCTGTGTTACCTTCTATCGTGCCTCCTCTATTTCTCTTGGGTTATGTCATCCTTTGTCCTTGTTAGGGTTTTTTTTTTTTAGTTTGTGTGGGGAGAAAAGGTTTTCATCTTAATTCCCTAAATAGAACACATACCAGTTTTAAGTTAAGCCGGACAAAGAATTATATGGGTGTAGGAATTCATTGTTTATCTCATATAATTGTAAAGTTTTTGAAGTGTGGTAGTCTTGATGGGAAAAACTGGAGCTGATGTGAGTTTGAGACTTTTTTTAAAGCACTTTGAGTTAAGTAGTTGATTTCTTGTTCTCTTATTGCTCAAGTCACATTCGGGCCACTGTCGTTTTTTCTTGCTCTATTACAAAATGTGCCATTTTATATTAAGAGCTAACGTAACTGTTGGATTATCATTAATAATTCATAAGTGTTTTATACTTTTCTTTAACTAACTCCCTTTCTATGGTTTGCAGAGTGAGGATTTTAGACCTCCATCTGATATTGACGATCTTGTTTCTTCATTTGAAAAGGTTAGAAGTTCTCTGGCATCTTCTATTCTTGTTTAG

mRNA sequence

ATGGATGGTTTCGGTAACGGAGCTAGAGTTCAAGTTGCGTCTACATCCGAGGATCTCAAGCGTTTTGGAGCTAATAATAATTCAACGGAGAATGCTCTATTTGATGCATCACAGTATGCATTTTTCGGCAAGGATGTCATGGAGGAGGTTGAGTTAGGGGGATTAGAAGATGAAGAGGATGATACACTTGCTGCTGGGATTGATGAGGAGGAGTTTTTGTTTGATAAGGAGAGTGAGGATTTTAGACCTCCATCTGATATTGACGATCTTGTTTCTTCATTTGAAAAGGTTAGAAGTTCTCTGGCATCTTCTATTCTTGTTTAG

Coding sequence (CDS)

ATGGATGGTTTCGGTAACGGAGCTAGAGTTCAAGTTGCGTCTACATCCGAGGATCTCAAGCGTTTTGGAGCTAATAATAATTCAACGGAGAATGCTCTATTTGATGCATCACAGTATGCATTTTTCGGCAAGGATGTCATGGAGGAGGTTGAGTTAGGGGGATTAGAAGATGAAGAGGATGATACACTTGCTGCTGGGATTGATGAGGAGGAGTTTTTGTTTGATAAGGAGAGTGAGGATTTTAGACCTCCATCTGATATTGACGATCTTGTTTCTTCATTTGAAAAGGTTAGAAGTTCTCTGGCATCTTCTATTCTTGTTTAG

Protein sequence

MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKVRSSLASSILV

Homology

[Close]

BLAST of Spg016959 vs. NCBI nr
Match: XP_038899006.1 (protein PAT1 homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 171.0 bits (432), Expect = 5.5e-39
Identity = 90/97 (92.78%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 1  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEED 60
          MDGFGNGAR+QVASTSEDLKRFGA  NSTE+ALFDASQYAFFGKDVMEEVELGGLEDEED
Sbjct: 1  MDGFGNGARLQVASTSEDLKRFGA--NSTEDALFDASQYAFFGKDVMEEVELGGLEDEED 60

Query: 61 DTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV 98
          D LAAGI+EEEFLFDKESEDFRPPSDIDDLVSSFEK+
Sbjct: 61 DALAAGIEEEEFLFDKESEDFRPPSDIDDLVSSFEKL 95

[Close]

BLAST of Spg016959 vs. NCBI nr
Match: XP_008444289.1 (PREDICTED: protein PAT1 homolog 1 [Cucumis melo] >TYK01889.1 protein PAT1-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 170.6 bits (431), Expect = 7.2e-39
Identity = 91/97 (93.81%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEED 60
          MDGFGNGARVQVASTSEDL RFGA  NSTE+ALFDASQYAFFGKDVMEEVELGGLEDEED
Sbjct: 1  MDGFGNGARVQVASTSEDLNRFGA--NSTEDALFDASQYAFFGKDVMEEVELGGLEDEED 60

Query: 61 DTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV 98
          DTLAAGI+EEEFLFDKESEDFRPPSDIDD VSSFEKV
Sbjct: 61 DTLAAGIEEEEFLFDKESEDFRPPSDIDDPVSSFEKV 95

[Close]

BLAST of Spg016959 vs. NCBI nr
Match: KAA0052329.1 (protein PAT1-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 170.6 bits (431), Expect = 7.2e-39
Identity = 91/97 (93.81%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEED 60
          MDGFGNGARVQVASTSEDL RFGA  NSTE+ALFDASQYAFFGKDVMEEVELGGLEDEED
Sbjct: 1  MDGFGNGARVQVASTSEDLNRFGA--NSTEDALFDASQYAFFGKDVMEEVELGGLEDEED 60

Query: 61 DTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV 98
          DTLAAGI+EEEFLFDKESEDFRPPSDIDD VSSFEKV
Sbjct: 61 DTLAAGIEEEEFLFDKESEDFRPPSDIDDPVSSFEKV 95

[Close]

BLAST of Spg016959 vs. NCBI nr
Match: XP_022981086.1 (uncharacterized protein LOC111480345 isoform X1 [Cucurbita maxima])

HSP 1 Score: 165.2 bits (417), Expect = 3.0e-37
Identity = 90/97 (92.78%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1   MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEED 60
           MDGFGNGARVQVASTS+DL RFGA  NSTE+ALFDASQYAFFGKD MEEVELGGLEDEED
Sbjct: 10  MDGFGNGARVQVASTSKDLTRFGA--NSTEDALFDASQYAFFGKD-MEEVELGGLEDEED 69

Query: 61  DTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV 98
           DTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEK+
Sbjct: 70  DTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKL 103

[Close]

BLAST of Spg016959 vs. NCBI nr
Match: XP_023523774.1 (uncharacterized protein LOC111787912 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 165.2 bits (417), Expect = 3.0e-37
Identity = 90/97 (92.78%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1   MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEED 60
           MDGFGNGARVQVASTS+DL RFGA  NSTE+ALFDASQYAFFGKD MEEVELGGLEDEED
Sbjct: 10  MDGFGNGARVQVASTSKDLTRFGA--NSTEDALFDASQYAFFGKD-MEEVELGGLEDEED 69

Query: 61  DTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV 98
           DTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEK+
Sbjct: 70  DTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKL 103

[Close]

BLAST of Spg016959 vs. ExPASy Swiss-Prot
Match: Q0WPK4 (Protein PAT1 homolog OS=Arabidopsis thaliana OX=3702 GN=PAT1 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-18
Identity = 55/98 (56.12%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 1  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEED 60
          MD FG G+ +  A  ++DLK+FG  +NST N +FDASQYAFFG DV+EEVELGGLE+E++
Sbjct: 1  MDAFGIGSSLNQAPVTQDLKKFG--DNSTGNTMFDASQYAFFGNDVVEEVELGGLEEEDE 60

Query: 61 DTLAAGIDEEEFLFDKES-EDFRPPSDIDDLVSSFEKV 98
               GI  E+F FDKE   D R  SD+DDL S+F K+
Sbjct: 61 ILSFTGI-AEDFSFDKEEVGDSRLLSDVDDLASTFSKL 95

[Close]

BLAST of Spg016959 vs. ExPASy Swiss-Prot
Match: Q94C98 (Protein PAT1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=PAT1H2 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.8e-09
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 14  STSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEF- 73
           S S D   F   ++   +ALFDASQY FFG+  +EEVELGGL+D  D T+   +D+EE+ 
Sbjct: 4   SDSRDFYNFAKTSSDNNSALFDASQYEFFGQS-LEEVELGGLDD--DGTVRGHVDDEEYH 63

Query: 74  LFDK-ESEDFRPPSDIDDLVSSFEKVRSSL 102
           LFDK E       SD+DDL ++F K+  ++
Sbjct: 64  LFDKREGAGLGSLSDMDDLATTFAKLNRNV 90

[Close]

BLAST of Spg016959 vs. ExPASy Swiss-Prot
Match: F4J077 (Protein PAT1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=PAT1H1 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 7.1e-05
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 0


Query: 14 STSEDLKRF-GANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEE--DDTLAAGIDEE 73
          S S DL  F  A++    + LFDASQY FFG++ ++++ELGGL+D+      L    D+E
Sbjct: 4  SDSRDLYNFVRASSLDKNSTLFDASQYEFFGQN-LDDMELGGLDDDGVIAPVLGHADDDE 63

Query: 74 EFLFDK-ESEDFRPPSDIDDLVSSFEKV 98
            LFDK E       SD+DDL ++F K+
Sbjct: 64 YHLFDKGEGAGLGSLSDMDDLATTFAKL 90

[Close]

BLAST of Spg016959 vs. ExPASy TrEMBL
Match: A0A5A7UFS4 (Protein PAT1-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G001670 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.5e-39
Identity = 91/97 (93.81%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEED 60
          MDGFGNGARVQVASTSEDL RFGA  NSTE+ALFDASQYAFFGKDVMEEVELGGLEDEED
Sbjct: 1  MDGFGNGARVQVASTSEDLNRFGA--NSTEDALFDASQYAFFGKDVMEEVELGGLEDEED 60

Query: 61 DTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV 98
          DTLAAGI+EEEFLFDKESEDFRPPSDIDD VSSFEKV
Sbjct: 61 DTLAAGIEEEEFLFDKESEDFRPPSDIDDPVSSFEKV 95

[Close]

BLAST of Spg016959 vs. ExPASy TrEMBL
Match: A0A5D3BUX1 (Protein PAT1-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G001530 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.5e-39
Identity = 91/97 (93.81%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEED 60
          MDGFGNGARVQVASTSEDL RFGA  NSTE+ALFDASQYAFFGKDVMEEVELGGLEDEED
Sbjct: 1  MDGFGNGARVQVASTSEDLNRFGA--NSTEDALFDASQYAFFGKDVMEEVELGGLEDEED 60

Query: 61 DTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV 98
          DTLAAGI+EEEFLFDKESEDFRPPSDIDD VSSFEKV
Sbjct: 61 DTLAAGIEEEEFLFDKESEDFRPPSDIDDPVSSFEKV 95

[Close]

BLAST of Spg016959 vs. ExPASy TrEMBL
Match: A0A1S3BAS9 (protein PAT1 homolog 1 OS=Cucumis melo OX=3656 GN=LOC103487656 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.5e-39
Identity = 91/97 (93.81%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEED 60
          MDGFGNGARVQVASTSEDL RFGA  NSTE+ALFDASQYAFFGKDVMEEVELGGLEDEED
Sbjct: 1  MDGFGNGARVQVASTSEDLNRFGA--NSTEDALFDASQYAFFGKDVMEEVELGGLEDEED 60

Query: 61 DTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV 98
          DTLAAGI+EEEFLFDKESEDFRPPSDIDD VSSFEKV
Sbjct: 61 DTLAAGIEEEEFLFDKESEDFRPPSDIDDPVSSFEKV 95

[Close]

BLAST of Spg016959 vs. ExPASy TrEMBL
Match: A0A6J1IVH7 (uncharacterized protein LOC111480345 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480345 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.5e-37
Identity = 90/97 (92.78%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1   MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEED 60
           MDGFGNGARVQVASTS+DL RFGA  NSTE+ALFDASQYAFFGKD MEEVELGGLEDEED
Sbjct: 10  MDGFGNGARVQVASTSKDLTRFGA--NSTEDALFDASQYAFFGKD-MEEVELGGLEDEED 69

Query: 61  DTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV 98
           DTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEK+
Sbjct: 70  DTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKL 103

[Close]

BLAST of Spg016959 vs. ExPASy TrEMBL
Match: A0A6J1FJ64 (uncharacterized protein LOC111445957 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445957 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.5e-37
Identity = 90/97 (92.78%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1   MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEED 60
           MDGFGNGARVQVASTS+DL RFGA  NSTE+ALFDASQYAFFGKD MEEVELGGLEDEED
Sbjct: 10  MDGFGNGARVQVASTSKDLTRFGA--NSTEDALFDASQYAFFGKD-MEEVELGGLEDEED 69

Query: 61  DTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKV 98
           DTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEK+
Sbjct: 70  DTLAAGIDEEEFLFDKESEDFRPPSDIDDLVSSFEKL 103

[Close]

BLAST of Spg016959 vs. TAIR 10
Match: AT1G79090.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167); BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 92.8 bits (229), Expect = 1.8e-19
Identity = 55/98 (56.12%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 1  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEED 60
          MD FG G+ +  A  ++DLK+FG  +NST N +FDASQYAFFG DV+EEVELGGLE+E++
Sbjct: 1  MDAFGIGSSLNQAPVTQDLKKFG--DNSTGNTMFDASQYAFFGNDVVEEVELGGLEEEDE 60

Query: 61 DTLAAGIDEEEFLFDKES-EDFRPPSDIDDLVSSFEKV 98
               GI  E+F FDKE   D R  SD+DDL S+F K+
Sbjct: 61 ILSFTGI-AEDFSFDKEEVGDSRLLSDVDDLASTFSKL 95

[Close]

BLAST of Spg016959 vs. TAIR 10
Match: AT1G79090.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167); BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 1260 Blast hits to 1163 proteins in 186 species: Archae - 0; Bacteria - 32; Metazoa - 596; Fungi - 277; Plants - 212; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink). )

HSP 1 Score: 92.8 bits (229), Expect = 1.8e-19
Identity = 55/98 (56.12%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 1  MDGFGNGARVQVASTSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEED 60
          MD FG G+ +  A  ++DLK+FG  +NST N +FDASQYAFFG DV+EEVELGGLE+E++
Sbjct: 1  MDAFGIGSSLNQAPVTQDLKKFG--DNSTGNTMFDASQYAFFGNDVVEEVELGGLEEEDE 60

Query: 61 DTLAAGIDEEEFLFDKES-EDFRPPSDIDDLVSSFEKV 98
               GI  E+F FDKE   D R  SD+DDL S+F K+
Sbjct: 61 ILSFTGI-AEDFSFDKEEVGDSRLLSDVDDLASTFSKL 95

[Close]

BLAST of Spg016959 vs. TAIR 10
Match: AT4G14990.1 (Topoisomerase II-associated protein PAT1 )

HSP 1 Score: 62.8 bits (151), Expect = 2.0e-10
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 14  STSEDLKRFGANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEEDDTLAAGIDEEEF- 73
           S S D   F   ++   +ALFDASQY FFG+  +EEVELGGL+D  D T+   +D+EE+ 
Sbjct: 4   SDSRDFYNFAKTSSDNNSALFDASQYEFFGQS-LEEVELGGLDD--DGTVRGHVDDEEYH 63

Query: 74  LFDK-ESEDFRPPSDIDDLVSSFEKVRSSL 102
           LFDK E       SD+DDL ++F K+  ++
Sbjct: 64  LFDKREGAGLGSLSDMDDLATTFAKLNRNV 90

[Close]

BLAST of Spg016959 vs. TAIR 10
Match: AT3G22270.1 (Topoisomerase II-associated protein PAT1 )

HSP 1 Score: 48.1 bits (113), Expect = 5.0e-06
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 0


Query: 14 STSEDLKRF-GANNNSTENALFDASQYAFFGKDVMEEVELGGLEDEE--DDTLAAGIDEE 73
          S S DL  F  A++    + LFDASQY FFG++ ++++ELGGL+D+      L    D+E
Sbjct: 4  SDSRDLYNFVRASSLDKNSTLFDASQYEFFGQN-LDDMELGGLDDDGVIAPVLGHADDDE 63

Query: 74 EFLFDK-ESEDFRPPSDIDDLVSSFEKV 98
            LFDK E       SD+DDL ++F K+
Sbjct: 64 YHLFDKGEGAGLGSLSDMDDLATTFAKL 90

The following BLAST results are available for this feature:

BLAST of Spg016959 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899006.1	5.5e-39	92.78	protein PAT1 homolog isoform X1 [Benincasa hispida]	[more]
XP_008444289.1	7.2e-39	93.81	PREDICTED: protein PAT1 homolog 1 [Cucumis melo] >TYK01889.1 protein PAT1-like p...	[more]
KAA0052329.1	7.2e-39	93.81	protein PAT1-like protein 1 [Cucumis melo var. makuwa]	[more]
XP_022981086.1	3.0e-37	92.78	uncharacterized protein LOC111480345 isoform X1 [Cucurbita maxima]	[more]
XP_023523774.1	3.0e-37	92.78	uncharacterized protein LOC111787912 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg016959 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0WPK4	2.5e-18	56.12	Protein PAT1 homolog OS=Arabidopsis thaliana OX=3702 GN=PAT1 PE=1 SV=1	[more]
Q94C98	2.8e-09	45.56	Protein PAT1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=PAT1H2 PE=2 SV=1	[more]
F4J077	7.1e-05	42.05	Protein PAT1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=PAT1H1 PE=1 SV=1	[more]

BLAST of Spg016959 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UFS4	3.5e-39	93.81	Protein PAT1-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3BUX1	3.5e-39	93.81	Protein PAT1-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3BAS9	3.5e-39	93.81	protein PAT1 homolog 1 OS=Cucumis melo OX=3656 GN=LOC103487656 PE=4 SV=1	[more]
A0A6J1IVH7	1.5e-37	92.78	uncharacterized protein LOC111480345 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FJ64	1.5e-37	92.78	uncharacterized protein LOC111445957 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Spg016959 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79090.1	1.8e-19	56.12	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G79090.2	1.8e-19	56.12	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT4G14990.1	2.0e-10	45.56	Topoisomerase II-associated protein PAT1	[more]
AT3G22270.1	5.0e-06	42.05	Topoisomerase II-associated protein PAT1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039900	Pat1-like	PANTHER	PTHR21551	TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1	coord: 12..99
None	No IPR available	PANTHER	PTHR21551:SF17	PROTEIN PAT1 HOMOLOG	coord: 12..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg016959.1	Spg016959.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA
biological_process	GO:0033962	P-body assembly
cellular_component	GO:0000932	P-body
molecular_function	GO:0003723	RNA binding