Spg016923 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg016923
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionEukaryotic translation initiation factor 5A
Locationscaffold9: 43982955 .. 43985135 (+)
RNA-Seq ExpressionSpg016923
SyntenySpg016923
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACACAGAAGAAGAAGAAGAAGAAGAAGCCCGGAAGCTGTAGAAGAAAGAAATCTTCAGCCATGTCGGACGAGGAGCACCACTTCGAATCCAAGGCCGACGCCGGAGCCTCCAAGACCTACCCGCAACAGGCCGGAACCATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGATTTCGTGTTTCTGTCTCTCGTTTTGTTGTATTCGTTGCGATGATTTGATTTTCTCGTTGTGTTGATAGTCGGATGCTTTTTTTAATTATTTTTTTTTGGTGGTGTTTAGGTTTGGGTTTTGGATCGGGCGTTTTAGATCTTTCGTTGATTTGAGATTTTTGTTTTGCCTGATTACTGATTGTAATCGTTTTTGTGCGGTTTATTGCATATGACATGGCGGACGTGGACGGTGAAATTTTAATTCTGTTTTTGAGGGTTGGGTTAGGAGAAATTGATGAATCTGATGTTGAAATTTCATTTTTGATTATACCGATCGATATTTGTTGAGAGTTTTGAGGTTTTGTCATTATGGTTTAGAAGAGTCTCTTGATGGTTGAGTTTTGTTCGGTCAACGATTAATTTTCAGTGTACTAATTTCTCATCCACCCTCTCTGGGAGGACGCTGGCGTGTACTATGTAGCTGTAGTTGAATCCTGATTTTATCCCGAAGGAGATAGTTGTCCCGGTGTCATACGTATCCCATATTTGGTATTTCCATGTCATAAACCCACATGAGGCGTTTGTGTTTATTGAGACTATTATTGCTACCTTTCATTATTGTCAATTAGTTAGTGAAAAAGTCTAATTGTGGCTGCTAGAAGGTTATATCGAATAATATTGCTAAGTTATATTTATGGGCATTGAAGTAGACAAGTGAAAAAGTCTTCCTTATTGGAAGCGTGCTCTTTAGGCAAATTTTCTGTGTTTTTAGTCCCATTTGTTTAATTTTTTTCTCTGGTTCGCATGTTAATGCAGGTGGTTGAGGTTTCAACTTCTAAGACTGGCAAGCACGGGCATGCTAAGTGTCACTTTGTGGGAATTGACATCTTCACTGCCAAGAAGCTCGAAGATATTGTTCCATCATCTCACAATTGTGATGTAAGGAGTCTATTATCTAGCTTGCGAATCATTTGGCTATATTTGATTTACCTGTTTCACTGATGGTTCAATTTCATGCTTTGTAGGTGCCTCATGTTAATCGTACTGATTATCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGTAATTTGGTTATATGAATTTGTTTGAATTAAATTGGTCTTGCAGATTTCTACAAACTCATTTGTAATGTTAAATATGTTTGTTTAGATATCTAGATTTCTTTGGAAATCTATGCATGTTTCAATGTGTTTTTATAATCAATTCTAGAAGTGAATCTCGTTTCTTTGGTGTCTCTACTTGCATTCCTTTGAATAGGAAGGAATCTTGCAATTGGTTATAGTCACATGTTATCTTTAGGAGGGGAACTTGGAATTTTTTTTTTGGTAAGAAACTGAACTTTGATTGAACAAATGAAAAAATATACGGGGATTCAGAAGAACAAAATCAAGATCATAATTACAAAAGGCCTAGTGACTTATGCCCACAAGGAAGTATTAAACCCGACAACCTCCCAAACTTCCTCACCCGTCTATCCTCCTTCCTAAAGATCTATTATTCCTCCAAAGCCAAACACTCAACAACACAGGGAAAAAAAAAGCCAGCCAGTACATAATGCCTCTCTCCCTGAAGGAAGAATGCTAAAGTACTTCCTTCAACAGTCCTTGCCCATCTCTGTTACATGGTCCACTAACACTGAATGAACTCCTCGTATGATCCTAAAGGTAGTTAGTAAACTGGCATTCTCACAGCAAATGATATGAATCCTCCTCATGCCTTGGAAATGAATGAGCAAATATTTGTGTGAAGGATCCAAAAGCAAGCGTAGAAGGAAGCAATGAATTGTTCATATATGCTGCGGCATGTAAAGCCTATTTCATCACTTGATTGACGTTTTTCTTTTGCTGCAGGTGAGTCTTTTAACTGACAATGGTAACACCAAGGATGATTTGAGGCTTCCAACTGATGATAACCTGCTCACTCAGGTAAACACATATATTAGGGCTAGTAAGATTCTCCATGCACTTGACATAGTTGTGTTGTGTACTTAG

mRNA sequence

ACACAGAAGAAGAAGAAGAAGAAGAAGCCCGGAAGCTGTAGAAGAAAGAAATCTTCAGCCATGTCGGACGAGGAGCACCACTTCGAATCCAAGGCCGACGCCGGAGCCTCCAAGACCTACCCGCAACAGGCCGGAACCATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAGACTGGCAAGCACGGGCATGCTAAGTGTCACTTTGTGGGAATTGACATCTTCACTGCCAAGAAGCTCGAAGATATTGTTCCATCATCTCACAATTGTGATGTGCCTCATGTTAATCGTACTGATTATCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGTCTTTTAACTGACAATGGTAACACCAAGGATGATTTGAGGCTTCCAACTGATGATAACCTGCTCACTCAGGTAAACACATATATTAGGGCTAGTAAGATTCTCCATGCACTTGACATAGTTGTGTTGTGTACTTAG

Coding sequence (CDS)

ACACAGAAGAAGAAGAAGAAGAAGAAGCCCGGAAGCTGTAGAAGAAAGAAATCTTCAGCCATGTCGGACGAGGAGCACCACTTCGAATCCAAGGCCGACGCCGGAGCCTCCAAGACCTACCCGCAACAGGCCGGAACCATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAGACTGGCAAGCACGGGCATGCTAAGTGTCACTTTGTGGGAATTGACATCTTCACTGCCAAGAAGCTCGAAGATATTGTTCCATCATCTCACAATTGTGATGTGCCTCATGTTAATCGTACTGATTATCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGTCTTTTAACTGACAATGGTAACACCAAGGATGATTTGAGGCTTCCAACTGATGATAACCTGCTCACTCAGGTAAACACATATATTAGGGCTAGTAAGATTCTCCATGCACTTGACATAGTTGTGTTGTGTACTTAG

Protein sequence

TQKKKKKKKPGSCRRKKSSAMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDNLLTQVNTYIRASKILHALDIVVLCT
Homology
[Close]
BLAST of Spg016923 vs. NCBI nr
Match: KAG6591533.1 (hypothetical protein SDJN03_13879, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 278.5 bits (711), Expect = 3.8e-71
Identity = 137/142 (96.48%), Postives = 140/142 (98.59%), Query Frame = 0 

Query: 6   KKKKPGSCRRKKSSAMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEV 65
           +KKK GSCRR KSSAMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEV
Sbjct: 86  QKKKLGSCRRTKSSAMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEV 145

Query: 66  STSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLL 125
           STSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLL
Sbjct: 146 STSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLL 205

Query: 126 TDNGNTKDDLRLPTDDNLLTQV 148
           TDNGNTKDDLRLPTDDNLL+Q+
Sbjct: 206 TDNGNTKDDLRLPTDDNLLSQI 227

[Close]
BLAST of Spg016923 vs. NCBI nr
Match: XP_011463671.1 (PREDICTED: mitotic checkpoint protein BUB3.3-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 264.6 bits (675), Expect = 5.7e-67
Identity = 127/129 (98.45%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 19  SAMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKC 78
           SAMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKC
Sbjct: 330 SAMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKC 389

Query: 79  HFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLP 138
           HFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLP
Sbjct: 390 HFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 449

Query: 139 TDDNLLTQV 148
           TDDNLLTQ+
Sbjct: 450 TDDNLLTQI 458

[Close]
BLAST of Spg016923 vs. NCBI nr
Match: XP_024192241.1 (eukaryotic translation initiation factor 5A-2 [Rosa chinensis] >PRQ40708.1 putative translation elongation factor IF5A [Rosa chinensis])

HSP 1 Score: 261.9 bits (668), Expect = 3.7e-66
Identity = 125/127 (98.43%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 21  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 80
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 81  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 140
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 141 DNLLTQV 148
           DNLLTQ+
Sbjct: 121 DNLLTQI 127

[Close]
BLAST of Spg016923 vs. NCBI nr
Match: XP_007045977.2 (PREDICTED: eukaryotic translation initiation factor 5A-2 [Theobroma cacao] >EOY01807.1 Eukaryotic elongation factor 5A-1 isoform 1 [Theobroma cacao])

HSP 1 Score: 261.9 bits (668), Expect = 3.7e-66
Identity = 125/127 (98.43%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 21  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 80
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 81  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 140
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 141 DNLLTQV 148
           DNLLTQ+
Sbjct: 121 DNLLTQI 127

[Close]
BLAST of Spg016923 vs. NCBI nr
Match: EOY01808.1 (Eukaryotic elongation factor 5A-1 isoform 2, partial [Theobroma cacao])

HSP 1 Score: 261.9 bits (668), Expect = 3.7e-66
Identity = 125/127 (98.43%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 21  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 80
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 81  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 140
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 141 DNLLTQV 148
           DNLLTQ+
Sbjct: 121 DNLLTQI 127

[Close]
BLAST of Spg016923 vs. ExPASy Swiss-Prot
Match: P69039 (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 6.6e-66
Identity = 120/127 (94.49%), Postives = 123/127 (96.85%), Query Frame = 0 

Query: 21  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 80
           MSDEEHHFESKADAGASKTYPQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 81  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 140
           V IDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 141 DNLLTQV 148
           DNLL  +
Sbjct: 121 DNLLALI 127

[Close]
BLAST of Spg016923 vs. ExPASy Swiss-Prot
Match: P69040 (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum OX=4097 GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 6.6e-66
Identity = 120/127 (94.49%), Postives = 123/127 (96.85%), Query Frame = 0 

Query: 21  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 80
           MSDEEHHFESKADAGASKTYPQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 81  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 140
           V IDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 141 DNLLTQV 148
           DNLL  +
Sbjct: 121 DNLLALI 127

[Close]
BLAST of Spg016923 vs. ExPASy Swiss-Prot
Match: Q9AXQ3 (Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 6.6e-66
Identity = 121/127 (95.28%), Postives = 122/127 (96.06%), Query Frame = 0 

Query: 21  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 80
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 81  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 140
           V IDIF AKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 141 DNLLTQV 148
           D LL QV
Sbjct: 121 DTLLNQV 127

[Close]
BLAST of Spg016923 vs. ExPASy Swiss-Prot
Match: P24922 (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.1e-65
Identity = 120/127 (94.49%), Postives = 123/127 (96.85%), Query Frame = 0 

Query: 21  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 80
           MSDEEH FESKADAGASKTYPQQAGTIRKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 81  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 140
           V IDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 141 DNLLTQV 148
           DNLLTQ+
Sbjct: 121 DNLLTQI 127

[Close]
BLAST of Spg016923 vs. ExPASy Swiss-Prot
Match: P56337 (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum OX=4113 GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.5e-65
Identity = 120/127 (94.49%), Postives = 123/127 (96.85%), Query Frame = 0 

Query: 21  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 80
           MSDEEHHFESKADAGASKTYPQQAGTIRK+G+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 81  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 140
           V IDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 141 DNLLTQV 148
           D LL QV
Sbjct: 121 DTLLAQV 127

[Close]
BLAST of Spg016923 vs. ExPASy TrEMBL
Match: A0A6J1IIZ4 (Eukaryotic translation initiation factor 5A OS=Cucurbita maxima OX=3661 GN=LOC111476711 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.8e-66
Identity = 125/127 (98.43%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 21  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 80
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 81  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 140
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 141 DNLLTQV 148
           DNLL+Q+
Sbjct: 121 DNLLSQI 127

[Close]
BLAST of Spg016923 vs. ExPASy TrEMBL
Match: A0A6J1FMM9 (Eukaryotic translation initiation factor 5A OS=Cucurbita moschata OX=3662 GN=LOC111446587 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.8e-66
Identity = 125/127 (98.43%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 21  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 80
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 81  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 140
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 141 DNLLTQV 148
           DNLL+Q+
Sbjct: 121 DNLLSQI 127

[Close]
BLAST of Spg016923 vs. ExPASy TrEMBL
Match: A0A061EBN4 (Eukaryotic translation initiation factor 5A OS=Theobroma cacao OX=3641 GN=TCM_011621 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.8e-66
Identity = 125/127 (98.43%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 21  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 80
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 81  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 140
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 141 DNLLTQV 148
           DNLLTQ+
Sbjct: 121 DNLLTQI 127

[Close]
BLAST of Spg016923 vs. ExPASy TrEMBL
Match: A0A061EHP3 (Eukaryotic elongation factor 5A-1 isoform 3 (Fragment) OS=Theobroma cacao OX=3641 GN=TCM_011621 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.8e-66
Identity = 126/130 (96.92%), Postives = 128/130 (98.46%), Query Frame = 0 

Query: 18  SSAMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAK 77
           S  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAK
Sbjct: 37  SVVMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAK 96

Query: 78  CHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRL 137
           CHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRL
Sbjct: 97  CHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRL 156

Query: 138 PTDDNLLTQV 148
           PTDDNLLTQ+
Sbjct: 157 PTDDNLLTQI 166

[Close]
BLAST of Spg016923 vs. ExPASy TrEMBL
Match: A0A061EB09 (Eukaryotic translation initiation factor 5A (Fragment) OS=Theobroma cacao OX=3641 GN=TCM_011621 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.8e-66
Identity = 125/127 (98.43%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 21  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 80
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 81  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 140
           VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 141 DNLLTQV 148
           DNLLTQ+
Sbjct: 121 DNLLTQI 127

[Close]
BLAST of Spg016923 vs. TAIR 10
Match: AT1G13950.1 (eukaryotic elongation factor 5A-1 )

HSP 1 Score: 241.9 bits (616), Expect = 3.7e-64
Identity = 116/129 (89.92%), Postives = 123/129 (95.35%), Query Frame = 0 

Query: 21  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 80
           MSDEEHHFES +DAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFES-SDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 81  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 140
           V IDIFT+KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDG+VSLLTDNG+TKDDL+LP D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPND 120

Query: 141 DNLLTQVNT 150
           D LL Q+ +
Sbjct: 121 DTLLQQIKS 128

[Close]
BLAST of Spg016923 vs. TAIR 10
Match: AT1G69410.1 (eukaryotic elongation factor 5A-3 )

HSP 1 Score: 233.0 bits (593), Expect = 1.7e-61
Identity = 117/144 (81.25%), Postives = 125/144 (86.81%), Query Frame = 0 

Query: 21  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 80
           MSD+EHHFES +DAGASKTYPQQAG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFES-SDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 81  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 140
           V IDIFT+KKLEDIVPSSHNCDVPHVNR DYQLIDISEDGFVSLLTDNG+TKDDL+LPTD
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTD 120

Query: 141 DNLLTQVNTYIRASKILHALDIVV 165
           + LLTQ+       K     DIVV
Sbjct: 121 EALLTQLKNGFEEGK-----DIVV 138

[Close]
BLAST of Spg016923 vs. TAIR 10
Match: AT1G26630.2 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 228.0 bits (580), Expect = 5.5e-60
Identity = 108/135 (80.00%), Postives = 121/135 (89.63%), Query Frame = 0 

Query: 21  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 80
           MSD+EHHFE+ +++GASKTYPQ AG IRK G+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 81  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 140
           V IDIFTAKKLEDIVPSSHNCDVPHVNR DYQLIDI+EDGFVSLLTD+G TKDDL+LPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 141 DNLLTQVNTYIRASK 156
           D L  Q+  ++ A +
Sbjct: 121 DGLTAQLLCFVNADE 134

[Close]
BLAST of Spg016923 vs. TAIR 10
Match: AT1G26630.1 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 224.9 bits (572), Expect = 4.7e-59
Identity = 107/127 (84.25%), Postives = 117/127 (92.13%), Query Frame = 0 

Query: 21  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 80
           MSD+EHHFE+ +++GASKTYPQ AG IRK G+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 81  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 140
           V IDIFTAKKLEDIVPSSHNCDVPHVNR DYQLIDI+EDGFVSLLTD+G TKDDL+LPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 141 DNLLTQV 148
           D L  Q+
Sbjct: 121 DGLTAQM 126

The following BLAST results are available for this feature:
BLAST of Spg016923 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6591533.13.8e-7196.48hypothetical protein SDJN03_13879, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_011463671.15.7e-6798.45PREDICTED: mitotic checkpoint protein BUB3.3-like [Fragaria vesca subsp. vesca][more]
XP_024192241.13.7e-6698.43eukaryotic translation initiation factor 5A-2 [Rosa chinensis] >PRQ40708.1 putat... [more]
XP_007045977.23.7e-6698.43PREDICTED: eukaryotic translation initiation factor 5A-2 [Theobroma cacao] >EOY0... [more]
EOY01808.13.7e-6698.43Eukaryotic elongation factor 5A-1 isoform 2, partial [Theobroma cacao][more]
BLAST of Spg016923 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P690396.6e-6694.49Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=40... [more]
P690406.6e-6694.49Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum OX=4097 GN=EI... [more]
Q9AXQ36.6e-6695.28Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum OX=4081 PE... [more]
P249221.1e-6594.49Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=40... [more]
P563371.5e-6594.49Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum OX=4113 GN=EI... [more]
BLAST of Spg016923 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IIZ41.8e-6698.43Eukaryotic translation initiation factor 5A OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1FMM91.8e-6698.43Eukaryotic translation initiation factor 5A OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A061EBN41.8e-6698.43Eukaryotic translation initiation factor 5A OS=Theobroma cacao OX=3641 GN=TCM_01... [more]
A0A061EHP31.8e-6696.92Eukaryotic elongation factor 5A-1 isoform 3 (Fragment) OS=Theobroma cacao OX=364... [more]
A0A061EB091.8e-6698.43Eukaryotic translation initiation factor 5A (Fragment) OS=Theobroma cacao OX=364... [more]
BLAST of Spg016923 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G13950.13.7e-6489.92eukaryotic elongation factor 5A-1 [more]
AT1G69410.11.7e-6181.25eukaryotic elongation factor 5A-3 [more]
AT1G26630.25.5e-6080.00Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein [more]
AT1G26630.14.7e-5984.25Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020189Translation elongation factor, IF5A C-terminalSMARTSM01376eIF_5a_2coord: 105..163
e-value: 8.2E-12
score: 55.2
IPR020189Translation elongation factor, IF5A C-terminalPFAMPF01287eIF-5acoord: 105..150
e-value: 5.7E-16
score: 58.4
NoneNo IPR availableGENE3D2.40.50.140coord: 106..165
e-value: 1.3E-18
score: 68.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42
NoneNo IPR availablePANTHERPTHR11673:SF42BNAA07G09420D PROTEINcoord: 21..143
IPR001884Translation elongation factor IF5A-likePIRSFPIRSF003025Transl_init_eIF5Acoord: 21..165
e-value: 1.7E-56
score: 188.0
IPR001884Translation elongation factor IF5A-likeTIGRFAMTIGR00037TIGR00037coord: 37..143
e-value: 2.9E-37
score: 125.4
IPR001884Translation elongation factor IF5A-likePANTHERPTHR11673TRANSLATION INITIATION FACTOR 5A FAMILY MEMBERcoord: 21..143
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 21..105
e-value: 4.2E-43
score: 147.1
IPR019769Translation elongation factor, IF5A, hypusine sitePROSITEPS00302IF5A_HYPUSINEcoord: 70..77
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 35..113
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 106..155

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg016923.1Spg016923.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045901 positive regulation of translational elongation
biological_process GO:0045905 positive regulation of translational termination
biological_process GO:0006413 translational initiation
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0043022 ribosome binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003723 RNA binding