Spg016888 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg016888
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold9: 41332505 .. 41333372 (-)
RNA-Seq ExpressionSpg016888
SyntenySpg016888
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCAGTCTCGCTGGCGCCAAACTGTGGATACTTGTCCGACCCCATTCGCGCCAAAATGGTGCCCCAAATCACCGCTTGATGGACTAAACCTAAAACCCATTCGCATCAGACGGTACATGCCCACTGATCTCCGAATCGCCCAATTCCCACGATCACATCGATTTTTAATTTCACCCGTCCGATCATTCTCCTATCGTGCCGTCACAGATTGAGAGAGAGAGAGAGATCTCGGTGGAGTCTCTTCAATCCTCACTGATCTCAATCGCAGTACGGCAAATTCAATTTCAAACGCACCGACAGAGAAGAGCGCGTGAAAGATGAAGCGCTCTTCGCAATCTCCGTCGACTTAATTTGCTCGCCTTACGAGTTCTCGATTCCGGAGGTACGAGCTCTACTACTCTAGATCTTCACAAAACAAGTTTCTATTGTCCGTATAGATTACCATTGTTTTGTTACAATCAGCTCTCATGGCGCTTTGGTGGCTTACGATCTTTGATTTTCTTTTAGGGCTGGAGTTCTGTGTTAATTAGATGGATTGTTTCGACATTAATTCTTTTGATATTTGGCTTTCTGGTTGTACTTCGTCAGATTAATTAGTGTAGCGAACTGGAGCGATTTCCAATTTTGCCCCAAACTTAGTGAAACAAGTAGATTGCATAACGACGAATTAGGGTAGTTCTTACAGAGCGATCGGCAGTCACAATTTCGTTTCCATCTGCACTCGAGGACGGATTCTCAAACAAAATATCACATCCATCGCATAATCAACTGCGATCCCATGACTTGGCGGCACAAGAACGACCTGGCATTTTCGGCCACACGACGAGTGAGGCTTCATTTGCTTTTAGCGGTTGTCGGTTGTAG

mRNA sequence

ATGTCTCAGTCTCGCTGGCGCCAAACTGTGGATACTTGTCCGACCCCATTCGCGCCAAAATGGTGCCCCAAATCACCGCTTGATGGACTAAACCTAAAACCCATTCGCATCAGACGGTACATGCCCACTGATCTCCGAATCGCCCAATTCCCACGATCACATCGATTTTTAATTTCACCCTACGGCAAATTCAATTTCAAACGCACCGACAGAGAAGAGCGCGTGAAAGATGAAGCGCTCTTCGCAATCTCCGTCGACTTAATTTGCTCGCCTTACGAGTTCTCGATTCCGGAGCGATCGGCAGTCACAATTTCGTTTCCATCTGCACTCGAGGACGGATTCTCAAACAAAATATCACATCCATCGCATAATCAACTGCGATCCCATGACTTGGCGGCACAAGAACGACCTGGCATTTTCGGCCACACGACGAGTGAGGCTTCATTTGCTTTTAGCGGTTGTCGGTTGTAG

Coding sequence (CDS)

ATGTCTCAGTCTCGCTGGCGCCAAACTGTGGATACTTGTCCGACCCCATTCGCGCCAAAATGGTGCCCCAAATCACCGCTTGATGGACTAAACCTAAAACCCATTCGCATCAGACGGTACATGCCCACTGATCTCCGAATCGCCCAATTCCCACGATCACATCGATTTTTAATTTCACCCTACGGCAAATTCAATTTCAAACGCACCGACAGAGAAGAGCGCGTGAAAGATGAAGCGCTCTTCGCAATCTCCGTCGACTTAATTTGCTCGCCTTACGAGTTCTCGATTCCGGAGCGATCGGCAGTCACAATTTCGTTTCCATCTGCACTCGAGGACGGATTCTCAAACAAAATATCACATCCATCGCATAATCAACTGCGATCCCATGACTTGGCGGCACAAGAACGACCTGGCATTTTCGGCCACACGACGAGTGAGGCTTCATTTGCTTTTAGCGGTTGTCGGTTGTAG

Protein sequence

MSQSRWRQTVDTCPTPFAPKWCPKSPLDGLNLKPIRIRRYMPTDLRIAQFPRSHRFLISPYGKFNFKRTDREERVKDEALFAISVDLICSPYEFSIPERSAVTISFPSALEDGFSNKISHPSHNQLRSHDLAAQERPGIFGHTTSEASFAFSGCRL
Homology
[Close]
BLAST of Spg016888 vs. NCBI nr
Match: KGN60330.1 (hypothetical protein Csa_001095 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 3.8e-12
Identity = 47/91 (51.65%), Postives = 49/91 (53.85%), Query Frame = 0 

Query: 8  QTVDTCPTPFAPKWCPKSPLDGLNLKPIRIRRYMPTDLRIAQFPRSHRFLISPYGKFNFK 67
          +T DTCP PFAPKW PKSPLD  NLKPIRIRRY    L   QFP S              
Sbjct: 8  RTADTCPAPFAPKWSPKSPLDQRNLKPIRIRRYPAPALPFTQFPPS-------------- 67

Query: 68 RTDREERVKDEALFAISVDLICSPYEFSIPE 99
               +RVK E  FAI V     PYEF IPE
Sbjct: 68 -----QRVKHELFFAIFVH-FAPPYEFRIPE 78

[Close]
BLAST of Spg016888 vs. ExPASy TrEMBL
Match: A0A0A0LE68 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895760 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.8e-12
Identity = 47/91 (51.65%), Postives = 49/91 (53.85%), Query Frame = 0 

Query: 8  QTVDTCPTPFAPKWCPKSPLDGLNLKPIRIRRYMPTDLRIAQFPRSHRFLISPYGKFNFK 67
          +T DTCP PFAPKW PKSPLD  NLKPIRIRRY    L   QFP S              
Sbjct: 8  RTADTCPAPFAPKWSPKSPLDQRNLKPIRIRRYPAPALPFTQFPPS-------------- 67

Query: 68 RTDREERVKDEALFAISVDLICSPYEFSIPE 99
               +RVK E  FAI V     PYEF IPE
Sbjct: 68 -----QRVKHELFFAIFVH-FAPPYEFRIPE 78

The following BLAST results are available for this feature:
BLAST of Spg016888 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60330.13.8e-1251.65hypothetical protein Csa_001095 [Cucumis sativus][more]
BLAST of Spg016888 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg016888 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LE681.8e-1251.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895760 PE=4 SV=1[more]
BLAST of Spg016888 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg016888.1Spg016888.1mRNA