Spg016862 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg016862
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ty3-gypsy retrotransposon protein
Location	scaffold9: 42498681 .. 42502271 (-)
RNA-Seq Expression	Spg016862
Synteny	Spg016862

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGAGATCAAGGAGGATCATACTCCTCTGGCTGTTGCAAGCAAGATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAGGGTTGCAGTCAAAGACAACCCACTGTTCGAATCTGTCGTTCCAACATCAAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAAGATGAAAGAATGGCAGAGATGGAAAGGAAACTCAATCTCTTAATGAAGGCAGTTGATGAGAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAGAGCCGAGAAGTGGCTGAGTCTAGCCAGACCCCTGCTGCAGGAAAGAATGATAAAGGGAAGGCTGTCGTGCATGAGGATCAACCGCAACACTCCGTGTCAGTTGCTTCTTTGTCTGTCCAACAACTGCAGGACATGATCATGAATTCCATCAGGGCTCAGTATGGTGGACCCACTCAAAGTTCCCTCTTGTATTCTAAACCTTATACAAAGAGGATTGACAATCTCAGACTACCCACTGGGTTTCAGCCTCCCAAATTCCAGCAGTTTGACGGAAAGGGCAACCCAAAGCAACACATCGCCCACTTTGTTGAAACCTGTGAGAACGCCGGTACGCGGGGAGATTTGCTTGTTAAGCAATTTGTCCGAACACTGAAGGGAAACGCGTTCGATTGGTACACTGACCTGGAGCCTGATACAATTGACAGCTGGGAACAGATGGAGAGAGAGTTTCTGAATCGCTTCTACAGTACGAGGCGAACAGTTAGTATGACAGAACTCACAAGCACAAAGCAGCGAAAGGGTGAGCTAGTCATTGATTACATCAATCGTTGGAGAGCCTTGAGTCTTGACTGTAAAGATAGACTCTCCGAGGTGTCCTCTGTTGAAATGTGCACCCAAGGTATGCACTGGGGACTTCTTTACATCTTGCAGGGGATAAAACCCCGGACCTTTGAAGAATTGGCGACTCGCGCTCATGATATGGAGTTGAGCATCGCTAGTAGAGGGGGCAAAGATCCCGTAGTCCCAGACATGAGGAAAGAAAAGAAGGAAGTCAAGGGCACTGAGAAAGTTGCAAAGAGTGCCACGAAAGAATCCATGGTCGTTAACACGACCCCGTTGAAATTTTCCTCCAAAGGAAAAGAAAGTAAATCCAGTAAGCAAATAGAGACAGGCGAGAGACGTCGCCTAACTTTAAAAGAAAGACAAGAAAAGGTATATCCATTTCCAGACTCCGACGTTCCAGATATGTTGGAACAGCTGTTGGAGAAGCAGCTGATTGAACTACCTGAATGCAAACGACCGGAAGAGTTAGGAAAAGTCAATGATCCTAACTACTGCAAGTATCACCGAGTTGTTAGTCATCCAGTGGAAAAATGTTTTGTATTGAAAGAGCTAATCCTTAAGTTGGCTCGTGAAAGGAAAATTGAGTTGGACCTTGATGAGGTGGCTCAAACAAATCATGCAACCATAATGGCAAATGTAGGGAATGAAAATCCCCTGATCTCCTCATGTGATTATGAAGAAAGATTAATTCAATTTGGGACCCTTGATCCTGTAGTGGTTCGATTTCAAAAAGAAGCCACAATGAGGGGGCCCCAAGGAAAATATAATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTCTTTTGTTCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGTTCCTCGGGAACGGTGGCAGTTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTATCACTTCCTCAGGAAGCTAAAAGCGTCCTTATTAATGCATTGATAGAGTCTGATGATACAAACATCCCAACCTCCGAGGCACGCCCATGTGCTTCGTGTTGCATGTCTATCGGATTTTCTGATGAAGATTTGTTGCTAGGGTCAAAGCCACACAATAGACCTCTATTCGTCTCAGGATATATTCGAGAACAAAGGGTTAGCCGGATCCTCATCGATGATGGATCAGCTGTCAATATAATGCCTAAGTCAACCATGAAGCAGTTAGGCATCTTAATGGAGGAACTATCAAACAGTAAGTTAGTGATCCAAGGCTTCAATCAGGGTGGACAACGGGCAATTGGCATGATACGCCTTGAACTCATCATTGGAGACTTAAAAGCTGATACTTTGTTCCATGTAATAGATTCTAAGACCACCTATAAACTGTTGTTAGGTCGTCCTTGGATCCATGGTAATGGAGTCATAACCTCCACATTGCACCAGTGCTTCAAATTCTATCAAGATGGCATCAAGAAAGTTGAAGCTGACACCAACCCATTTTCAGAAGCTGAGTCTCATTTCGCTGATGCAAAGTTTTATCTGAAGAATGAAAACACAGGGGAAACCATACCTGCAGAAATCCCCTTGATAAAAAAAAATGATAAACTCGATTTGGAGCTTCATGCAGATGCAAGAAAAGAAGCTGTTAAAGATATGGATACTTCCGACCTGAAAAAGGGTGAAGCGTCTACAAGCCTTGCGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGATACGTCCCCTTATCTCGACGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGGTCGGTGATGTTGAAATTTTGAAGGAAAGTTTCGCTACGCCTCTTACAAAGATCACAAGACAAGAGGTTAAGAAACCCGAGGATGATCAGATAAAAGCGATTTTGCCTGACAGACGAACTAAAGACGGGTTCGACCCCAAGGCATACAAACTTCTAGCAAAAGCAGGTTATGACTTCACAACTCACACTGAGTTTAAAAGTCTAAGGGTTTTTGATGGAAGAGCTGAGCTCTCTGCAACACAGAAGAAACTTCTAAAGGAAGGCTATAGTCTGCCTACAACAAGAAAAGGGCTCGGATATAAGTCGCCAGAGCCGGTTCGCATAACAGGAAGAGGGAAGGCAAAAGTGGCAAACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAGAGTACACAACCTACCGATAGCTCCACTCAACCTTCAGTTTTTCGAAGGTTAAGTATGCCCAGTGAGGAAGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGATTAAATGTGCCCATGAGGAAAGAAGAGAGTACATTTTCAGCTCCGGAGGTGGCTCGACCATCAGTTTTTCAAAGGTTAAGTGTTACTACGAGAAGAGACAAAAAAGAA

mRNA sequence

ATTGAGATCAAGGAGGATCATACTCCTCTGGCTGTTGCAAGCAAGATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAGGGTTGCAGTCAAAGACAACCCACTGTTCGAATCTGTCGTTCCAACATCAAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAAGATGAAAGAATGGCAGAGATGGAAAGGAAACTCAATCTCTTAATGAAGGCAGTTGATGAGAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAGAGCCGAGAAGTGGCTGAATTAATTCAATTTGGGACCCTTGATCCTGTAGTGGTTCGATTTCAAAAAGAAGCCACAATGAGGGGGCCCCAAGGAAAATATAATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTCTTTTGTTCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGTTCCTCGGGAACGGTGGCAGTTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTATCACTTCCTCAGGAAGCTAAAAGCAAGAAACTTCTAAAGGAAGGCTATAGTCTGCCTACAACAAGAAAAGGGCTCGGATATAAGTCGCCAGAGCCGGTTCGCATAACAGGAAGAGGGAAGGCAAAAGTGGCAAACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAGAGTACACAACCTACCGATAGCTCCACTCAACCTTCAGTTTTTCGAAGGTTAAGTATGCCCAGTGAGGAAGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGATTAAATGTGCCCATGAGGAAAGAAGAGAGTACATTTTCAGCTCCGGAGGTGGCTCGACCATCAGTTTTTCAAAGGTTAAGTGTTACTACGAGAAGAGACAAAAAAGAA

Coding sequence (CDS)

ATTGAGATCAAGGAGGATCATACTCCTCTGGCTGTTGCAAGCAAGATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAGGGTTGCAGTCAAAGACAACCCACTGTTCGAATCTGTCGTTCCAACATCAAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAAGATGAAAGAATGGCAGAGATGGAAAGGAAACTCAATCTCTTAATGAAGGCAGTTGATGAGAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAGAGCCGAGAAGTGGCTGAATTAATTCAATTTGGGACCCTTGATCCTGTAGTGGTTCGATTTCAAAAAGAAGCCACAATGAGGGGGCCCCAAGGAAAATATAATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAGGAAAGTGAAGATTTCTTTTGTTCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGTTCCTCGGGAACGGTGGCAGTTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTATCACTTCCTCAGGAAGCTAAAAGCAAGAAACTTCTAAAGGAAGGCTATAGTCTGCCTACAACAAGAAAAGGGCTCGGATATAAGTCGCCAGAGCCGGTTCGCATAACAGGAAGAGGGAAGGCAAAAGTGGCAAACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAGAGTACACAACCTACCGATAGCTCCACTCAACCTTCAGTTTTTCGAAGGTTAAGTATGCCCAGTGAGGAAGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGATTAAATGTGCCCATGAGGAAAGAAGAGAGTACATTTTCAGCTCCGGAGGTGGCTCGACCATCAGTTTTTCAAAGGTTAAGTGTTACTACGAGAAGAGACAAAAAAGAA

Protein sequence

IEIKEDHTPLAVASKISKLIEESSKDRVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQFGTLDPVVVRFQKEATMRGPQGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKSKKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTQPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAPEVARPSVFQRLSVTTRRDKKE

Homology

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BLAST of Spg016862 vs. NCBI nr
Match: TYK28162.1 (uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 1.4e-29
Identity = 81/165 (49.09%), Postives = 109/165 (66.06%), Query Frame = 0


Query: 247 DLSSFSIKDLLSLPQEAKSKKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHI 306
           D  S  I +   L   +  KKLL+EG+ +P +RKGLGYKSPEP+RIT +GK KV ++NHI
Sbjct: 251 DFKSLKIHEQPKL--SSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHI 310

Query: 307 TVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTQPSVFR 366
           TV+EVD  +EKE  +QRTS F RI P VARA VF+RLS+ E E +  Q T +  Q S F+
Sbjct: 311 TVKEVDSMEEKEGDNQRTSTFDRISPHVARAPVFERLSMTEAERKDHQSTSNLDQRSAFQ 370

Query: 367 RLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAPEVAR 412
           RL++  +EE+    T   T+PSAF+RL++  +K   T  AP + R
Sbjct: 371 RLTITFKEEKGICQTSMTTKPSAFERLSITKKKNAQTPRAPIINR 413

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BLAST of Spg016862 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 2.4e-29
Identity = 83/161 (51.55%), Postives = 104/161 (64.60%), Query Frame = 0


Query: 247  DLSSFSIKDLLSLPQEAKSKKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHI 306
            +  S  I D   L   +  KKLL+EG+S+P +RKGLGYKSPEP+RIT +GK KV + NHI
Sbjct: 1039 EFKSLEIHDRPEL--SSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHI 1098

Query: 307  TVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTQPSVFR 366
            T+EE D++  KE  +QR SVF RIRP VAR +VF+RLS+ E E E  Q   S  + SVFR
Sbjct: 1099 TIEEDDNTDVKEGDNQRISVFDRIRPSVARPVVFERLSMTEAERERLQSVPSLERHSVFR 1158

Query: 367  RLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP 408
            RL+    +EEST      TRPSAF+RL V  +K      AP
Sbjct: 1159 RLTTTPIKEESTCHALTTTRPSAFERLGVSKKKNVQAPRAP 1197

[Close]

BLAST of Spg016862 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 2.0e-23
Identity = 74/199 (37.19%), Postives = 121/199 (60.80%), Query Frame = 0


Query: 72  ERKLNLLMKAVDERD-LEIAYLKNQLQSREVAE----LIQFGTLDPVVVRFQKEATMRGP 131
           E+++ L ++ V + +  E+  +     SR + E    L+QFGT +P+VV+F +E +   P
Sbjct: 503 EKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTFEPIVVQFFQEISYEDP 562

Query: 132 QGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVM 191
           QG+   IE+++EGW +V  RKK++    ++ESR +++ +R  K+QK K KKK+ + K V 
Sbjct: 563 QGEKRPIEEDDEGWIVVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLVH 622

Query: 192 EESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPG 251
            E  +F    + +TLA++ P+ FL D Q E  E V CH ++  E++ +P  S     V  
Sbjct: 623 NEDMNFSRPQRLVTLADFLPKSFLCDHQDEDPEVVACHAINTTEEEIIPPRSLEGEGVSK 682

Query: 252 DLSSFSIKDLLSLPQEAKS 266
           DLS F+++DLLSLPQE K+
Sbjct: 683 DLSRFNVEDLLSLPQETKT 701

HSP 2 Score: 89.4 bits (220), Expect = 8.4e-14
Identity = 52/96 (54.17%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 11  AVASKISKLIEESSKDRVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAE 70
           A+A  I K + ES K  + +K+NPL+      S +     +PDVMSVMMADV  +  MAE
Sbjct: 38  AIAQSILKQLMESPKAGIVIKENPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAE 97

Query: 71  MERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQ 107
           MERK+NLLMK VDERD EIA LK Q+Q+RE AE  Q
Sbjct: 98  MERKINLLMKVVDERDHEIAALKEQMQTRETAESSQ 133

HSP 3 Score: 141.0 bits (354), Expect = 2.4e-29
Identity = 83/161 (51.55%), Postives = 104/161 (64.60%), Query Frame = 0


Query: 247 DLSSFSIKDLLSLPQEAKSKKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHI 306
           +  S  I D   L   +  KKLL+EG+S+P +RKGLGYKSPEP+RIT +GK KV + NHI
Sbjct: 201 EFKSLEIHDRPEL--SSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHI 260

Query: 307 TVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTQPSVFR 366
           T+EE D++  KE  +QR SVF RIRP VAR +VF+RLS+ E E E  Q   S  + SVFR
Sbjct: 261 TIEEDDNTDVKEGDNQRISVFDRIRPSVARPVVFERLSMTEAERERLQSVPSLERHSVFR 320

Query: 367 RLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP 408
           RL+    +EEST      TRPSAF+RL V  +K      AP
Sbjct: 321 RLTTTPIKEESTCHALTTTRPSAFERLGVSKKKNVQAPRAP 359

[Close]

BLAST of Spg016862 vs. NCBI nr
Match: KAA0042067.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK18009.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 2.4e-29
Identity = 79/153 (51.63%), Postives = 103/153 (67.32%), Query Frame = 0


Query: 266 KKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTS 325
           KKLL+EG+++P +RKGLGYKSPEP+RIT +GK KV + NHITV+EVD  KEKE   QRTS
Sbjct: 847 KKLLREGHAIPMSRKGLGYKSPEPIRITRKGKEKVVDNNHITVKEVDSMKEKEGDGQRTS 906

Query: 326 VFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTQPSVFRRLSMPSEEEESTFSTPNVT 385
            F RI P VAR  VF+RLS+ E E +  Q T +  + S F+RL+M S++E+        T
Sbjct: 907 AFDRISPHVARTPVFERLSMTEVERKDHQSTSNLDRRSAFQRLTMTSKKEKGICQAWMTT 966

Query: 386 RPSAFQRLNVPMRKEESTFSAPEVARPSVFQRL 419
           RPSAF+RL++  +K   T       RP +F RL
Sbjct: 967 RPSAFERLSMAKKKNVQT------PRPPIFNRL 993

[Close]

BLAST of Spg016862 vs. NCBI nr
Match: KAA0042067.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK18009.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 1.2e-07
Identity = 44/111 (39.64%), Postives = 67/111 (60.36%), Query Frame = 0


Query: 104 LIQFGTLDPVVVRFQKEATMRGPQGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRD 163
           L+QFGT +PVVV+F +E      + K  SIE+++EGW +V RRKK+K +  +KESR +R+
Sbjct: 389 LVQFGTFEPVVVQFHQEVAPEDSREKERSIEEDDEGWIVVTRRKKRKSTSIQKESRFYRN 448

Query: 164 NKRKAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAEYFPRRFLDDSQ 215
            +R  K++K K KKK+++ K   E      C     T  E  P R L++ +
Sbjct: 449 YRRGNKAEKNKKKKKTQKLK-FDENLGVVACHAINATEEESIPLRSLEEEE 498

HSP 2 Score: 139.8 bits (351), Expect = 5.4e-29
Identity = 82/161 (50.93%), Postives = 104/161 (64.60%), Query Frame = 0


Query: 247 DLSSFSIKDLLSLPQEAKSKKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHI 306
           +  S  I D   L   +  KKLL+EG+S+P +RKGLGYKSPEP+RIT +GK KV + NHI
Sbjct: 414 EFKSLEIHDRPEL--SSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHI 473

Query: 307 TVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTQPSVFR 366
           T+EE D++  KE  +QR SVF RIRP VAR +VF+RLS+ E E E  Q   +  + SVFR
Sbjct: 474 TIEEDDNTDVKEGDNQRISVFDRIRPSVARPVVFERLSMTEAERERLQSVPNLERHSVFR 533

Query: 367 RLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP 408
           RL+    +EEST      TRPSAF+RL V  +K      AP
Sbjct: 534 RLTTTPIKEESTCHALTTTRPSAFERLGVSKKKNVQAPRAP 572

[Close]

BLAST of Spg016862 vs. ExPASy TrEMBL
Match: A0A5D3DXC7 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00760 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.9e-30
Identity = 81/165 (49.09%), Postives = 109/165 (66.06%), Query Frame = 0


Query: 247 DLSSFSIKDLLSLPQEAKSKKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHI 306
           D  S  I +   L   +  KKLL+EG+ +P +RKGLGYKSPEP+RIT +GK KV ++NHI
Sbjct: 251 DFKSLKIHEQPKL--SSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHI 310

Query: 307 TVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTQPSVFR 366
           TV+EVD  +EKE  +QRTS F RI P VARA VF+RLS+ E E +  Q T +  Q S F+
Sbjct: 311 TVKEVDSMEEKEGDNQRTSTFDRISPHVARAPVFERLSMTEAERKDHQSTSNLDQRSAFQ 370

Query: 367 RLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAPEVAR 412
           RL++  +EE+    T   T+PSAF+RL++  +K   T  AP + R
Sbjct: 371 RLTITFKEEKGICQTSMTTKPSAFERLSITKKKNAQTPRAPIINR 413

[Close]

BLAST of Spg016862 vs. ExPASy TrEMBL
Match: A0A5A7TJZ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003220 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.2e-29
Identity = 79/153 (51.63%), Postives = 103/153 (67.32%), Query Frame = 0


Query: 266 KKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTS 325
           KKLL+EG+++P +RKGLGYKSPEP+RIT +GK KV + NHITV+EVD  KEKE   QRTS
Sbjct: 847 KKLLREGHAIPMSRKGLGYKSPEPIRITRKGKEKVVDNNHITVKEVDSMKEKEGDGQRTS 906

Query: 326 VFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTQPSVFRRLSMPSEEEESTFSTPNVT 385
            F RI P VAR  VF+RLS+ E E +  Q T +  + S F+RL+M S++E+        T
Sbjct: 907 AFDRISPHVARTPVFERLSMTEVERKDHQSTSNLDRRSAFQRLTMTSKKEKGICQAWMTT 966

Query: 386 RPSAFQRLNVPMRKEESTFSAPEVARPSVFQRL 419
           RPSAF+RL++  +K   T       RP +F RL
Sbjct: 967 RPSAFERLSMAKKKNVQT------PRPPIFNRL 993

[Close]

BLAST of Spg016862 vs. ExPASy TrEMBL
Match: A0A5A7TJZ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003220 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.7e-08
Identity = 44/111 (39.64%), Postives = 67/111 (60.36%), Query Frame = 0


Query: 104 LIQFGTLDPVVVRFQKEATMRGPQGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRD 163
           L+QFGT +PVVV+F +E      + K  SIE+++EGW +V RRKK+K +  +KESR +R+
Sbjct: 389 LVQFGTFEPVVVQFHQEVAPEDSREKERSIEEDDEGWIVVTRRKKRKSTSIQKESRFYRN 448

Query: 164 NKRKAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAEYFPRRFLDDSQ 215
            +R  K++K K KKK+++ K   E      C     T  E  P R L++ +
Sbjct: 449 YRRGNKAEKNKKKKKTQKLK-FDENLGVVACHAINATEEESIPLRSLEEEE 498

HSP 2 Score: 138.7 bits (348), Expect = 5.9e-29
Identity = 82/199 (41.21%), Postives = 123/199 (61.81%), Query Frame = 0


Query: 72  ERKLNLLMKAVDERDLEIAYLKNQ-----LQSREVAELIQFGTLDPVVVRFQKEATMRGP 131
           E+K+ L ++ V + +   A + ++     L   +   L+QFGT +PVVV+F +E     P
Sbjct: 33  EKKIELDLEEVAQTNHAAAMIMSEAILPRLIFEQRESLVQFGTFEPVVVQFHQEVAPEDP 92

Query: 132 QGKYNSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVM 191
           Q K  SIE ++EGWT+V RRKK+K +  +KE R +R+ +R  K+QK K KKK+++ K + 
Sbjct: 93  QEKERSIEKDDEGWTIVTRRKKRKSTLIQKEPRFYRNYRRGNKTQKNKKKKKTQKLKLIN 152

Query: 192 EESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPG 251
           EE +DF  + + +TLA +FP RFL D Q E  E V CH +D +E++ +P  S     V  
Sbjct: 153 EEDKDFPRTQRLVTLANFFPTRFLCDHQDENPEVVACHAIDAIEEESIPLRSLEEEGVSK 212

Query: 252 DLSSFSIKDLLSLPQEAKS 266
           DL  F++ DLLSLPQE K+
Sbjct: 213 DLLRFNVDDLLSLPQETKT 231

[Close]

BLAST of Spg016862 vs. ExPASy TrEMBL
Match: A0A5A7UMY2 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00830 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 5.9e-29
Identity = 75/146 (51.37%), Postives = 102/146 (69.86%), Query Frame = 0


Query: 266 KKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKESVDQRTS 325
           KKLL+EG+ +P +RKGLGYKSPEP+RIT +GK KV + NHITV+EVD  +EKE  +QRTS
Sbjct: 294 KKLLREGHVIPMSRKGLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEEKEGDNQRTS 353

Query: 326 VFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTQPSVFRRLSMPSEEEESTFSTPNVT 385
            F RI P VARA VF+RLS+ E + +  Q T +  + S F+RL++  +EE+    T   T
Sbjct: 354 TFDRISPHVARAPVFERLSMTEAKRKDHQSTSNLDRRSAFQRLTITFKEEKGICQTSMTT 413

Query: 386 RPSAFQRLNVPMRKEESTFSAPEVAR 412
           +PSAF+RL++  +K   T  AP + R
Sbjct: 414 KPSAFERLSITKKKNAQTPRAPIINR 439

[Close]

BLAST of Spg016862 vs. ExPASy TrEMBL
Match: A0A5A7UMH1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G002660 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.3e-28
Identity = 75/149 (50.34%), Postives = 100/149 (67.11%), Query Frame = 0


Query: 259 LPQEAKSKKLLKEGYSLPTTRKGLGYKSPEPVRITGRGKAKVANTNHITVEEVDDSKEKE 318
           L   +  KKLL+EG+++P +RKGLGYKSPEP+RIT +GK KV + NHITV+EVD  +EKE
Sbjct: 256 LKLSSTKKKLLREGHAIPMSRKGLGYKSPEPIRITIKGKEKVVDNNHITVKEVDSMEEKE 315

Query: 319 SVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTQPSVFRRLSMPSEEEEST 378
              QRTS F RI P V RA VF+RLS+ E E +  Q T +  Q S F+RL++  +EE+  
Sbjct: 316 GDSQRTSAFDRISPHVTRAPVFERLSMTEAERKDHQSTSNVDQRSAFQRLTITFKEEKGI 375

Query: 379 FSTPNVTRPSAFQRLNVPMRKEESTFSAP 408
                 T+PSAF+RL++  +K   T  AP
Sbjct: 376 CQASITTKPSAFERLSITKKKNAQTPRAP 404

The following BLAST results are available for this feature:

BLAST of Spg016862 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK28162.1	1.4e-29	49.09	uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]	[more]
XP_031735972.1	2.4e-29	51.55	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]
XP_031735972.1	2.0e-23	37.19	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]
KAA0042067.1	2.4e-29	51.63	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK18009.1 retrotranspos...	[more]
KAA0042067.1	1.2e-07	39.64	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK18009.1 retrotranspos...	[more]

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BLAST of Spg016862 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg016862 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DXC7	6.9e-30	49.09	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7TJZ7	1.2e-29	51.63	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7TJZ7	5.7e-08	39.64	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7UMY2	5.9e-29	51.37	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7UMH1	1.3e-28	50.34	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Spg016862 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 346..411
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 374..390
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 346..367
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..190
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg016862.1	Spg016862.1	mRNA