Spg016807 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg016807
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPolyamine-modulated factor 1-binding protein
Locationscaffold9: 43165942 .. 43167820 (-)
RNA-Seq ExpressionSpg016807
SyntenySpg016807
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACTTCCGAATCAAAACCCGACGATCAGCTTATTCCGTTGCCGGAATCTGAATCGCAGCTCTCGGTTCTCATCTTCGGTACGATTCTTCGTTTCTCTTTCTTTCTCTTCAACGCACACATTCAAAAGACGCGCGAAAACGCGAACTACTACGCTTTTTCGCAATGAAAATCTGTCTGCCTGACATTGTTTAGCGAGATTATTCGTTAGATTTTGCCTCACCTATTGCGAAAAATCGACATTGTTAATCGTCTACTAGTTGTGCTTAAAGAAGTAAGAAATGCTTTCGGATCAAATTATAGCTAGCTGATGAAACTTTGTCTCAATTGCATTTGATAATGTTCGGCGCAGGTTTGACTGGAAATGCCGATTAGGTTAACTTTCTCGGCTTCTGATACTATGAGTTTGTGTAACTCAAATCCGAAATAGATAGTCTGTTTGTTTTAGGCACATTATTGAACAAATCGGCAGTGCTAGTTGTACTTTTTTAAGACGAGGAGGTATTTGTATTCTTAAACTTAGAGTCTGCCTTCTCCAAGATGTATTAAGAGTCTGACTGCTCCAAATGTTGGCTCTGCTGTGTATTCGTATTATTCTTAACACTACTTGAGTCGAGAATTGTGTTCAGAAACGGCCAGTCTTCATATCTTATGATGCTCCCTCCATTTATATATGTAGTGCATCTCTTATTTGATTTTTTAGCTTCACTTAACCGTAACAGAATGAGAAGTGATATGTATTAATTCTCTTGCTTTGAGGTGGTTGTATTCGAAGAAAGGTTTCTCCTCTGCAGATTTATAGGCTTATAAATCATATCAGACTAAATGCACTCATGTAATTAGATTGGTTTTGGACAGAGGTGGTAAATAATAGTTGAAACCTATGAAAACTTTGGAGCCCCGAAACAAGCGTGTTGATCAGTTCAAACAAAGACGTGCTTGCTTTGATCACAAAACCATTTTTTATTTTTCTCTTACTTTCATTGCATGTTGAAGTGTGTTGATCACGCCCTGATCTTTGGATTAGTCTGTATCATTCGATTAGAGAACGCTACTTCTGATTTTTTTTTTATGCCGCAGATATATCTCAACAGGCCCAAGGGGCTATGGAGAACATGCTTAGAATGATTAGGTTTGTTAATCATCAACAGTAGCTTGATTTGCCTCTTTCTTCTTTTTTCTTTTTGATACTTCTGGTTTATTCATTACTGATAAATAATTGATATCATCGTCATATTGACAGTGAAAATTTAAAATTTTCATATAAAGGATTTAAAAAGCAGGAACTCCTTTTCAAAAAAAAAAAAAAAAGCATGAACTCTTCGAAATATTACATGATTGAGAGAATGAAAATTGTTTGATGATATGACGTTTTCTTCGATGTTTAGATTCTAGTATATGCTTTCAATAAATTCTATTAATAAATTTGTGCCAGCAAAAGAGTACTGATGAATATATTCTAGTGTATGCTTTCAATAAAGTACTTTTATTTACCTCTTTTCCTTCTTCATATTAGAGCATTCTTCCAGTCGTCAGATTTAAATATACTGTGAAATTATTTGTTTTTTGTCGTCCACCAATACCATCTATCTTCCCATTTCTCATGTGCCCGTCATTTTCTGAATCTTCTACCCCTAACGACACTCAAATTAATTGTATAAAACGTATAGTACATCTACGTCCTAATGCTAACCTGAGTCTTCTCAACTGTTTGCAGTGAAATTGATCAAAACGCCGTTGGAATATTGGAAGACATAGAAAAGTGTAGGGGTACTGCTCTTGACAGGAAGGGAGTCCTAGAGGAAGAGAAACAACAATTTCAACAAACTGCTTACACTGTTTTAGACATGCTCAACAACGGAGGGGGAACGCTGTAA

mRNA sequence

ATGGCAACTTCCGAATCAAAACCCGACGATCAGCTTATTCCGTTGCCGGAATCTGAATCGCAGCTCTCGGTTCTCATCTTCGATATATCTCAACAGGCCCAAGGGGCTATGGAGAACATGCTTAGAATGATTAGTGAAATTGATCAAAACGCCGTTGGAATATTGGAAGACATAGAAAAGTGTAGGGGTACTGCTCTTGACAGGAAGGGAGTCCTAGAGGAAGAGAAACAACAATTTCAACAAACTGCTTACACTGTTTTAGACATGCTCAACAACGGAGGGGGAACGCTGTAA

Coding sequence (CDS)

ATGGCAACTTCCGAATCAAAACCCGACGATCAGCTTATTCCGTTGCCGGAATCTGAATCGCAGCTCTCGGTTCTCATCTTCGATATATCTCAACAGGCCCAAGGGGCTATGGAGAACATGCTTAGAATGATTAGTGAAATTGATCAAAACGCCGTTGGAATATTGGAAGACATAGAAAAGTGTAGGGGTACTGCTCTTGACAGGAAGGGAGTCCTAGAGGAAGAGAAACAACAATTTCAACAAACTGCTTACACTGTTTTAGACATGCTCAACAACGGAGGGGGAACGCTGTAA

Protein sequence

MATSESKPDDQLIPLPESESQLSVLIFDISQQAQGAMENMLRMISEIDQNAVGILEDIEKCRGTALDRKGVLEEEKQQFQQTAYTVLDMLNNGGGTL
Homology
[Close]
BLAST of Spg016807 vs. NCBI nr
Match: XP_038898230.1 (uncharacterized protein LOC120085955 isoform X2 [Benincasa hispida])

HSP 1 Score: 173.3 bits (438), Expect = 1.0e-39
Identity = 90/97 (92.78%), Postives = 93/97 (95.88%), Query Frame = 0 

Query: 1  MATSESKPDDQLIPLPESESQLSVLIFDISQQAQGAMENMLRMISEIDQNAVGILEDIEK 60
          MATSESKP DQLIPLPESESQLS LIFDISQQAQGAME+MLRMISEIDQNAVGI+EDIEK
Sbjct: 1  MATSESKPHDQLIPLPESESQLSALIFDISQQAQGAMESMLRMISEIDQNAVGIVEDIEK 60

Query: 61 CRGTALDRKGVLEEEKQQFQQTAYTVLDMLNNGGGTL 98
          CRG+ALDRKGVLEEEKQQFQQ AYTVLDMLNNG GTL
Sbjct: 61 CRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGEGTL 97

[Close]
BLAST of Spg016807 vs. NCBI nr
Match: XP_038898231.1 (uncharacterized protein LOC120085955 isoform X3 [Benincasa hispida])

HSP 1 Score: 173.3 bits (438), Expect = 1.0e-39
Identity = 90/97 (92.78%), Postives = 93/97 (95.88%), Query Frame = 0 

Query: 1  MATSESKPDDQLIPLPESESQLSVLIFDISQQAQGAMENMLRMISEIDQNAVGILEDIEK 60
          MATSESKP DQLIPLPESESQLS LIFDISQQAQGAME+MLRMISEIDQNAVGI+EDIEK
Sbjct: 1  MATSESKPHDQLIPLPESESQLSALIFDISQQAQGAMESMLRMISEIDQNAVGIVEDIEK 60

Query: 61 CRGTALDRKGVLEEEKQQFQQTAYTVLDMLNNGGGTL 98
          CRG+ALDRKGVLEEEKQQFQQ AYTVLDMLNNG GTL
Sbjct: 61 CRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGEGTL 97

[Close]
BLAST of Spg016807 vs. NCBI nr
Match: XP_038898229.1 (uncharacterized protein LOC120085955 isoform X1 [Benincasa hispida])

HSP 1 Score: 173.3 bits (438), Expect = 1.0e-39
Identity = 90/97 (92.78%), Postives = 93/97 (95.88%), Query Frame = 0 

Query: 1  MATSESKPDDQLIPLPESESQLSVLIFDISQQAQGAMENMLRMISEIDQNAVGILEDIEK 60
          MATSESKP DQLIPLPESESQLS LIFDISQQAQGAME+MLRMISEIDQNAVGI+EDIEK
Sbjct: 1  MATSESKPHDQLIPLPESESQLSALIFDISQQAQGAMESMLRMISEIDQNAVGIVEDIEK 60

Query: 61 CRGTALDRKGVLEEEKQQFQQTAYTVLDMLNNGGGTL 98
          CRG+ALDRKGVLEEEKQQFQQ AYTVLDMLNNG GTL
Sbjct: 61 CRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGEGTL 97

[Close]
BLAST of Spg016807 vs. NCBI nr
Match: XP_022937053.1 (uncharacterized protein LOC111443468 [Cucurbita moschata])

HSP 1 Score: 169.5 bits (428), Expect = 1.5e-38
Identity = 91/105 (86.67%), Postives = 95/105 (90.48%), Query Frame = 0 

Query: 1   MATSESKPDDQLIPLP--------ESESQLSVLIFDISQQAQGAMENMLRMISEIDQNAV 60
           MA+SESKP+DQLIPLP        ESESQLSVL+F ISQQAQGAMENMLRMISEIDQNAV
Sbjct: 1   MASSESKPNDQLIPLPESESLPESESESQLSVLLFHISQQAQGAMENMLRMISEIDQNAV 60

Query: 61  GILEDIEKCRGTALDRKGVLEEEKQQFQQTAYTVLDMLNNGGGTL 98
           GILEDIEKCRG+ALDRKGVLEEEKQQFQQ AYTVLDMLNNGGGTL
Sbjct: 61  GILEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL 105

[Close]
BLAST of Spg016807 vs. NCBI nr
Match: XP_004136463.2 (uncharacterized protein LOC101215419 [Cucumis sativus] >KAE8651370.1 hypothetical protein Csa_001898 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 1.9e-38
Identity = 90/101 (89.11%), Postives = 93/101 (92.08%), Query Frame = 0 

Query: 1   MATSESKPDDQLIP------LPESESQLSVLIFDISQQAQGAMENMLRMISEIDQNAVGI 60
           MATSESKP+DQLIP      LPESESQLS LIFDISQQAQGAMENMLRMISEIDQNAVGI
Sbjct: 1   MATSESKPNDQLIPLPESESLPESESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 61  LEDIEKCRGTALDRKGVLEEEKQQFQQTAYTVLDMLNNGGG 96
           +EDIEKCRG+ALDRKGVLEEEKQQFQQ AYTVLDMLNNGGG
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 101

[Close]
BLAST of Spg016807 vs. ExPASy TrEMBL
Match: A0A6J1FEZ1 (uncharacterized protein LOC111443468 OS=Cucurbita moschata OX=3662 GN=LOC111443468 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 7.0e-39
Identity = 91/105 (86.67%), Postives = 95/105 (90.48%), Query Frame = 0 

Query: 1   MATSESKPDDQLIPLP--------ESESQLSVLIFDISQQAQGAMENMLRMISEIDQNAV 60
           MA+SESKP+DQLIPLP        ESESQLSVL+F ISQQAQGAMENMLRMISEIDQNAV
Sbjct: 1   MASSESKPNDQLIPLPESESLPESESESQLSVLLFHISQQAQGAMENMLRMISEIDQNAV 60

Query: 61  GILEDIEKCRGTALDRKGVLEEEKQQFQQTAYTVLDMLNNGGGTL 98
           GILEDIEKCRG+ALDRKGVLEEEKQQFQQ AYTVLDMLNNGGGTL
Sbjct: 61  GILEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL 105

[Close]
BLAST of Spg016807 vs. ExPASy TrEMBL
Match: A0A0A0LJE0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881050 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 9.2e-39
Identity = 90/101 (89.11%), Postives = 93/101 (92.08%), Query Frame = 0 

Query: 1   MATSESKPDDQLIP------LPESESQLSVLIFDISQQAQGAMENMLRMISEIDQNAVGI 60
           MATSESKP+DQLIP      LPESESQLS LIFDISQQAQGAMENMLRMISEIDQNAVGI
Sbjct: 1   MATSESKPNDQLIPLPESESLPESESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 61  LEDIEKCRGTALDRKGVLEEEKQQFQQTAYTVLDMLNNGGG 96
           +EDIEKCRG+ALDRKGVLEEEKQQFQQ AYTVLDMLNNGGG
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 101

[Close]
BLAST of Spg016807 vs. ExPASy TrEMBL
Match: A0A6J1IGC1 (uncharacterized protein LOC111476676 OS=Cucurbita maxima OX=3661 GN=LOC111476676 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.2e-38
Identity = 91/105 (86.67%), Postives = 94/105 (89.52%), Query Frame = 0 

Query: 1   MATSESKPDDQLIPLPESES--------QLSVLIFDISQQAQGAMENMLRMISEIDQNAV 60
           MA+SESKP DQLIPLPESES        QLSVL+F ISQQAQGAMENMLRMISEIDQNAV
Sbjct: 1   MASSESKPTDQLIPLPESESLSESESETQLSVLLFHISQQAQGAMENMLRMISEIDQNAV 60

Query: 61  GILEDIEKCRGTALDRKGVLEEEKQQFQQTAYTVLDMLNNGGGTL 98
           GILEDIEKCRG+ALDRKGVLEEEKQQFQQ AYTVLDMLNNGGGTL
Sbjct: 61  GILEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL 105

[Close]
BLAST of Spg016807 vs. ExPASy TrEMBL
Match: A0A5A7TBQ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007070 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.8e-38
Identity = 91/104 (87.50%), Postives = 94/104 (90.38%), Query Frame = 0 

Query: 1   MATSESKPDDQLIP------LPESESQLSVLIFDISQQAQGAMENMLRMISEIDQNAVGI 60
           MATSESKP+DQLIP      LPE ESQLS LIFDISQQAQGAMENMLRMISEIDQNAVGI
Sbjct: 1   MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 61  LEDIEKCRGTALDRKGVLEEEKQQFQQTAYTVLDMLNN-GGGTL 98
           +EDIEKCRG+ALDRKGVLEEEKQQFQQ AYTVLDMLNN GGGTL
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL 104

[Close]
BLAST of Spg016807 vs. ExPASy TrEMBL
Match: A0A1S3CR82 (uncharacterized protein LOC103503784 OS=Cucumis melo OX=3656 GN=LOC103503784 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.8e-38
Identity = 91/104 (87.50%), Postives = 94/104 (90.38%), Query Frame = 0 

Query: 1   MATSESKPDDQLIP------LPESESQLSVLIFDISQQAQGAMENMLRMISEIDQNAVGI 60
           MATSESKP+DQLIP      LPE ESQLS LIFDISQQAQGAMENMLRMISEIDQNAVGI
Sbjct: 1   MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 61  LEDIEKCRGTALDRKGVLEEEKQQFQQTAYTVLDMLNN-GGGTL 98
           +EDIEKCRG+ALDRKGVLEEEKQQFQQ AYTVLDMLNN GGGTL
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL 104

[Close]
BLAST of Spg016807 vs. TAIR 10
Match: AT5G25570.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 101.3 bits (251), Expect = 4.5e-22
Identity = 53/99 (53.54%), Postives = 74/99 (74.75%), Query Frame = 0 

Query: 1  MATSESKPDDQLI----PLPESESQLSVLIFDISQQAQGAMENMLRMISEIDQNAVGILE 60
          MA S S+ D QL+    P  +++S L+ L+F++SQQ Q  MENML+M+ EIDQN+VGI E
Sbjct: 1  MAESPSQSDAQLVAHQSPGQQADSDLTSLVFEMSQQVQMGMENMLKMVYEIDQNSVGIKE 60

Query: 61 DIEKCRGTALDRKGVLEEEKQQFQQTAYTVLDMLNNGGG 96
          +IEK +  A+++K +LEEEK QFQ+ AYT+LDML+N  G
Sbjct: 61 EIEKSKDFAMEKKRILEEEKDQFQKAAYTILDMLSNSRG 99

[Close]
BLAST of Spg016807 vs. TAIR 10
Match: AT5G25570.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 101.3 bits (251), Expect = 4.5e-22
Identity = 53/99 (53.54%), Postives = 74/99 (74.75%), Query Frame = 0 

Query: 1  MATSESKPDDQLI----PLPESESQLSVLIFDISQQAQGAMENMLRMISEIDQNAVGILE 60
          MA S S+ D QL+    P  +++S L+ L+F++SQQ Q  MENML+M+ EIDQN+VGI E
Sbjct: 1  MAESPSQSDAQLVAHQSPGQQADSDLTSLVFEMSQQVQMGMENMLKMVYEIDQNSVGIKE 60

Query: 61 DIEKCRGTALDRKGVLEEEKQQFQQTAYTVLDMLNNGGG 96
          +IEK +  A+++K +LEEEK QFQ+ AYT+LDML+N  G
Sbjct: 61 EIEKSKDFAMEKKRILEEEKDQFQKAAYTILDMLSNSRG 99

[Close]
BLAST of Spg016807 vs. TAIR 10
Match: AT5G25570.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages. )

HSP 1 Score: 85.9 bits (211), Expect = 2.0e-17
Identity = 54/131 (41.22%), Postives = 74/131 (56.49%), Query Frame = 0 

Query: 1   MATSESKPDDQLI----PLPESESQLSVLIFDI--------------------------- 60
           MA S S+ D QL+    P  +++S L+ L+F+I                           
Sbjct: 1   MAESPSQSDAQLVAHQSPGQQADSDLTSLVFEIRIKREFFMFVKSNALMICHLLTVLKTN 60

Query: 61  -----SQQAQGAMENMLRMISEIDQNAVGILEDIEKCRGTALDRKGVLEEEKQQFQQTAY 96
                SQQ Q  MENML+M+ EIDQN+VGI E+IEK +  A+++K +LEEEK QFQ+ AY
Sbjct: 61  AIAEMSQQVQMGMENMLKMVYEIDQNSVGIKEEIEKSKDFAMEKKRILEEEKDQFQKAAY 120

The following BLAST results are available for this feature:
BLAST of Spg016807 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038898230.11.0e-3992.78uncharacterized protein LOC120085955 isoform X2 [Benincasa hispida][more]
XP_038898231.11.0e-3992.78uncharacterized protein LOC120085955 isoform X3 [Benincasa hispida][more]
XP_038898229.11.0e-3992.78uncharacterized protein LOC120085955 isoform X1 [Benincasa hispida][more]
XP_022937053.11.5e-3886.67uncharacterized protein LOC111443468 [Cucurbita moschata][more]
XP_004136463.21.9e-3889.11uncharacterized protein LOC101215419 [Cucumis sativus] >KAE8651370.1 hypothetica... [more]
BLAST of Spg016807 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg016807 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FEZ17.0e-3986.67uncharacterized protein LOC111443468 OS=Cucurbita moschata OX=3662 GN=LOC1114434... [more]
A0A0A0LJE09.2e-3989.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881050 PE=4 SV=1[more]
A0A6J1IGC11.2e-3886.67uncharacterized protein LOC111476676 OS=Cucurbita maxima OX=3661 GN=LOC111476676... [more]
A0A5A7TBQ07.8e-3887.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CR827.8e-3887.50uncharacterized protein LOC103503784 OS=Cucumis melo OX=3656 GN=LOC103503784 PE=... [more]
BLAST of Spg016807 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G25570.14.5e-2253.54unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
AT5G25570.24.5e-2253.54unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ... [more]
AT5G25570.32.0e-1741.22unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36800POLYAMINE-MODULATED FACTOR 1-BINDING PROTEINcoord: 1..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg016807.1Spg016807.1mRNA