Spg016796 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg016796
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Nucleic acid-binding, OB-fold containing protein
Location	scaffold9: 38059002 .. 38061460 (+)
RNA-Seq Expression	Spg016796
Synteny	Spg016796

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTGAAAAAGAGAGAGAGAGACACACACCGGTTGAGAAGAGAGATTTTCGATCGATTTTACGCGAATTGGGATTAGGGTTTGGCGTGCTGCTGATCTTCGGTTTCGGCATCAATGGCGACGGGCAAATCACCTACGCCGGCATCGCAGGACCTGCAGCAGAGCAATGCGGCGGCGAGGCCAGGTCTGAGGAAGCCAGTCTTCGTTAAGGTCGAACAGCTCAAGCCTGGCACTAATGGCCACACACTCATCGTCAAGGTTGTCAGCTCCAATACCGTGTTGCAGAAGGGTCGATCGGTGTCTCAGCACCTTCGACAGACGCGGATCGCTGAGTGCCTGGTTGGGGATGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAGGGTATGGATTTTGGATTCTGTCATTGCTGTTTGGTTTCTGGGAATTTTGGGGGAGAGGGGAGAGTGTTTGGGTTTATGTCGTCTTTTTGTGTGAATTGGGAAGGGGAAATTAGGTATCGTTTGGATCGCAGTTGGGGGCCAAATCAATGGTTATGTGGGTTGGGATATTTGAATTATGTACCCCATAGCGATTGGAATTTGACATTTTCATACACTTACAACTCTGGGGTTGAAACAAGGAAATGATATGGATTGTGAGAAGGGTTTTGAACCTAGTTATTGCTGATGCACTTAAAGGAACTTGAAAGTAGAAATGAGAGGCCTAGAATTGATTTTACTTTGCAAAAGTTAATTTCAATATCAGTAGCCTGAACTGGATGTCGATATGAAAAGAACTTTAGTGTCTTGCTCTAGGTTTTGTGTTGGGTTAAGAATGGCTAGGCAGAATCAAATCCCTGTGGTTTCCTGCTCTTCATTTATTATTTACTCATAAGCTTCAACTTGTTTCAAATTGAAGAATTAGTCTTTATATCAATTGTATGCTTACTGAAGATTTTAATTGAAACTGAAAGCTTGATGTTAATTCATCACAAATCCATAGCCCAATCTACTTCTAGTTGGTCTGTAAACTATTGACACTTGAGTTTGTAGCCTTGAAATGAAATTGCTGTAAACAAGGATGATGATATGCATTGAACCGATTTATCATGGTTACCATACAAATATATATGTTTAGAAAGTATATAATACTTTCAAAGCATACTTAATTTTGTTTTCTTTGTTACCTTAGCATTTAAACTCCTCTAAAGTTCTAAATGCGTTATTCTGTTTCCTCAGTTGATCAAGTAAAACCTGGGACAACTGTCATTCTTCGAAATGCAAAGATTGACATGTTCAAAGGGTCTATGAGGCTAGCAGTTGATAAATGGGGCCGCATTGAGCTCACCGAGCCTGCTAATTTCGTTGTGAAGGAAGACAATAATCTATCTTTAGTTGAGTATGAACTTGTGAATGTTGCAGACGAATGAGGGAGGTCCTACTAAGGGCCAACTTATGCTTACAATGGGTTGAGATGGCTGGTCATGAGTTTCCTGGTAATCTGCTGATGTGAATACATAACAACGCTATATTATAATTTTCTATGGGTGAAGTATTTAAGTGAACAATCCCTTGATTTCGTCTAAACTTCAAAACATGAAAGCTCTTCTCCGTCGGTTTGACTTACATGAAGCCATGTTTTGTCGGGTATAGGTATAATTAGGTACTAGTTTGGTTCTTATAACTCTGGAAATGTAATCGAGCATTAATGACGACGAAGAATGCTTTCGGTATAGCTCTGATATCGTATATAACATGCAGAGTTTTCAATTTGCTGGGCATGTATATTGTATATTCTCTGGCAATTCATATTATATGCAGGTTCTGGACAGGAACTTTGATATTCCAGCCTAGAGCCTTTTAAGGCAACAGCAAAAATCCTTGGATAAATGCAAAAGGTAAATTGCCTCAACTTTACTGAGCATTAGCCTGTTGTGAATCACCCTTTACTTGCTGTTCTGAATTTCAAATTGTATGACAATGAAACTTACCATTAAACGTTTCCATCACTCTGTAAGCTAGTTAGTTTAGTAGAATGATAATTTGATCGAACTGCCCTTTAGACAACGGTAGCTCGTGTTGCCCCGCCGCTCCTCTGTTTCACTCTCCCCAGTATCATTAGGCACATATCCATTTTTCTGCCTCCCTCAACTCCATTTTTCTCTTCAAATGGTGGCCAGGAGATAATTGTTAATGCTATAATCTACCGTCTTTTTTTTTAAACTTTAATTCATTCTCACGATTGGGAGCTACTTAGTGTTGATTTGGAATGACTTTCTTAATGTTTGATTTTTTTTTTTTTGGGCACTTGTAAGCATTTTTTTAAACCCTTCAAAAGTGATTCCAGTCTGTTTTTGTTTGTAGAAGTCATTCCACTGTTTAAAACCATATTCGAAGATAGGTTATCCATATGTTAAATGATAGATTGATATCAACAAACTAATGGAAAAAACCATTTCCCACTTTGAAAGTTTA

mRNA sequence

ATGGCGACGGGCAAATCACCTACGCCGGCATCGCAGGACCTGCAGCAGAGCAATGCGGCGGCGAGGCCAGGTCTGAGGAAGCCAGTCTTCGTTAAGGTCGAACAGCTCAAGCCTGGCACTAATGGCCACACACTCATCGTCAAGGTTGTCAGCTCCAATACCGTGTTGCAGAAGGGTCGATCGGTGTCTCAGCACCTTCGACAGACGCGGATCGCTGAGTGCCTGGTTGGGGATGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAGGTTGATCAAGTAAAACCTGGGACAACTGTCATTCTTCGAAATGCAAAGATTGACATGTTCAAAGGGTCTATGAGGCTAGCAGTTGATAAATGGGGCCGCATTGAGCTCACCGAGCCTGCTAATTTCGTTGTGAAGGAAGACAATAATCTATCTTTAGTTGAGTATGAACTTGTGAATGTTGCAGACGAATGA

Coding sequence (CDS)

ATGGCGACGGGCAAATCACCTACGCCGGCATCGCAGGACCTGCAGCAGAGCAATGCGGCGGCGAGGCCAGGTCTGAGGAAGCCAGTCTTCGTTAAGGTCGAACAGCTCAAGCCTGGCACTAATGGCCACACACTCATCGTCAAGGTTGTCAGCTCCAATACCGTGTTGCAGAAGGGTCGATCGGTGTCTCAGCACCTTCGACAGACGCGGATCGCTGAGTGCCTGGTTGGGGATGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAGGTTGATCAAGTAAAACCTGGGACAACTGTCATTCTTCGAAATGCAAAGATTGACATGTTCAAAGGGTCTATGAGGCTAGCAGTTGATAAATGGGGCCGCATTGAGCTCACCGAGCCTGCTAATTTCGTTGTGAAGGAAGACAATAATCTATCTTTAGTTGAGTATGAACTTGTGAATGTTGCAGACGAATGA

Protein sequence

MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE

Homology

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BLAST of Spg016796 vs. NCBI nr
Match: XP_038899654.1 (uncharacterized protein At4g28440-like [Benincasa hispida])

HSP 1 Score: 291.2 bits (744), Expect = 5.3e-75
Identity = 147/154 (95.45%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPASQ+LQQSNAAARPGLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQSNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT+ILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELTEPANFVVKEDNNLSLVEYELVNVADE 155
           KWGRIEL EP +FVVKEDNNLSLVEYELVNVA+E
Sbjct: 121 KWGRIELAEPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of Spg016796 vs. NCBI nr
Match: XP_008463705.1 (PREDICTED: uncharacterized protein At4g28440-like [Cucumis melo] >KAA0066804.1 Nucleic acid-binding [Cucumis melo var. makuwa] >TYK27951.1 Nucleic acid-binding [Cucumis melo var. makuwa])

HSP 1 Score: 288.1 bits (736), Expect = 4.4e-74
Identity = 144/154 (93.51%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPASQ+LQQ+NAAARPGLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT+ILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELTEPANFVVKEDNNLSLVEYELVNVADE 155
           KWGRIE+ +P +FVVKEDNNLSLVEYELVNVA+E
Sbjct: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of Spg016796 vs. NCBI nr
Match: XP_004146043.1 (uncharacterized protein At4g28440 [Cucumis sativus] >KGN55099.1 hypothetical protein Csa_012716 [Cucumis sativus])

HSP 1 Score: 287.0 bits (733), Expect = 9.9e-74
Identity = 144/154 (93.51%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPASQ+LQQ+NAA RPGLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT+ILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELTEPANFVVKEDNNLSLVEYELVNVADE 155
           KWGRIEL +P +FVVKEDNNLSLVEYELVNVA+E
Sbjct: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of Spg016796 vs. NCBI nr
Match: XP_022139613.1 (uncharacterized protein At4g28440-like [Momordica charantia])

HSP 1 Score: 280.0 bits (715), Expect = 1.2e-71
Identity = 142/154 (92.21%), Postives = 148/154 (96.10%), Query Frame = 0


Query: 1   MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPAS ++QQSNA ARPGLRKPVFVKVEQLKPGTNGHTL VKVV+SNTVLQKGR
Sbjct: 1   MATGKSPTPASPEVQQSNAEARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTIL TARNDQVD VKP TT+I+RNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETTIIIRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELTEPANFVVKEDNNLSLVEYELVNVADE 155
           KWGRIELTEPANFVVKEDNNLSLVEYELVNVA+E
Sbjct: 121 KWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of Spg016796 vs. NCBI nr
Match: XP_023535412.1 (uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261.5 bits (667), Expect = 4.5e-66
Identity = 136/154 (88.31%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 1   MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MAT KSPTPAS          R GLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTT+ILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELTEPANFVVKEDNNLSLVEYELVNVADE 155
           KWGRIE+ EP NFVVKEDNNLSLVEYELVNVA+E
Sbjct: 121 KWGRIEVVEPENFVVKEDNNLSLVEYELVNVAEE 144

[Close]

BLAST of Spg016796 vs. ExPASy Swiss-Prot
Match: O49453 (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.0e-45
Identity = 93/135 (68.89%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 26  RKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDE 85
           RKPVFVKVEQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECL+GDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 86  TGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDN 145
           TG ILFTARNDQVD +KPG TVILRN++IDMFKG+MRL VDKWGRIE T  A+F VKEDN
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 146 NLSLVEYELVNVADE 155
           NLSLVEYEL+NV  +
Sbjct: 138 NLSLVEYELINVGGD 152

[Close]

BLAST of Spg016796 vs. ExPASy TrEMBL
Match: A0A5D3DWE0 (Nucleic acid-binding OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001550 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.2e-74
Identity = 144/154 (93.51%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPASQ+LQQ+NAAARPGLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT+ILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELTEPANFVVKEDNNLSLVEYELVNVADE 155
           KWGRIE+ +P +FVVKEDNNLSLVEYELVNVA+E
Sbjct: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of Spg016796 vs. ExPASy TrEMBL
Match: A0A1S3CKC4 (uncharacterized protein At4g28440-like OS=Cucumis melo OX=3656 GN=LOC103501787 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.2e-74
Identity = 144/154 (93.51%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPASQ+LQQ+NAAARPGLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT+ILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELTEPANFVVKEDNNLSLVEYELVNVADE 155
           KWGRIE+ +P +FVVKEDNNLSLVEYELVNVA+E
Sbjct: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of Spg016796 vs. ExPASy TrEMBL
Match: A0A0A0L242 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G629450 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 4.8e-74
Identity = 144/154 (93.51%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPASQ+LQQ+NAA RPGLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT+ILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELTEPANFVVKEDNNLSLVEYELVNVADE 155
           KWGRIEL +P +FVVKEDNNLSLVEYELVNVA+E
Sbjct: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of Spg016796 vs. ExPASy TrEMBL
Match: A0A6J1CG19 (uncharacterized protein At4g28440-like OS=Momordica charantia OX=3673 GN=LOC111010472 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.9e-72
Identity = 142/154 (92.21%), Postives = 148/154 (96.10%), Query Frame = 0


Query: 1   MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPAS ++QQSNA ARPGLRKPVFVKVEQLKPGTNGHTL VKVV+SNTVLQKGR
Sbjct: 1   MATGKSPTPASPEVQQSNAEARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTIL TARNDQVD VKP TT+I+RNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETTIIIRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELTEPANFVVKEDNNLSLVEYELVNVADE 155
           KWGRIELTEPANFVVKEDNNLSLVEYELVNVA+E
Sbjct: 121 KWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of Spg016796 vs. ExPASy TrEMBL
Match: A0A6J1FBC1 (uncharacterized protein At4g28440-like OS=Cucurbita moschata OX=3662 GN=LOC111442557 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.8e-66
Identity = 135/154 (87.66%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 1   MATGKSPTPASQDLQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MAT KSPTPAS          R GLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTT+ILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELTEPANFVVKEDNNLSLVEYELVNVADE 155
           KWGRIE+ EP NFVVKEDNNLSL+EYELVNVA+E
Sbjct: 121 KWGRIEVVEPENFVVKEDNNLSLIEYELVNVAEE 144

[Close]

BLAST of Spg016796 vs. TAIR 10
Match: AT2G33845.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 197.6 bits (501), Expect = 7.4e-51
Identity = 106/156 (67.95%), Postives = 119/156 (76.28%), Query Frame = 0


Query: 4   GKSPTPASQDLQQSN----AAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQK- 63
           G++P P S   + S            +KPVFVKV+QLKPGT+GHTL VKVV  N+V QK 
Sbjct: 27  GRNPPPPSSSTRTSQNQPPQHTPQEKKKPVFVKVDQLKPGTSGHTLTVKVVDQNSVPQKP 86

Query: 64  GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLA 123
           G + S HLR  RI+ECLVGDET  ILFTARNDQV+ +KPG TV LRNAKIDMFKGSMRLA
Sbjct: 87  GAASSSHLRPARISECLVGDETACILFTARNDQVELMKPGATVNLRNAKIDMFKGSMRLA 146

Query: 124 VDKWGRIELTEPANFVVKEDNNLSLVEYELVNVADE 155
           VDKWGRIE TEPA+  VKEDNNLSLVEYELVNV +E
Sbjct: 147 VDKWGRIEATEPADITVKEDNNLSLVEYELVNVVEE 182

[Close]

BLAST of Spg016796 vs. TAIR 10
Match: AT1G23750.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 193.0 bits (489), Expect = 1.8e-49
Identity = 91/134 (67.91%), Postives = 113/134 (84.33%), Query Frame = 0


Query: 20  AARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDE 79
           + + GL+KP F KV+QL+PGT+GH + VK+VS+  VLQKGR+     RQ RI+EC+VGDE
Sbjct: 4   STKAGLKKPAFTKVDQLRPGTSGHNVNVKIVSTKMVLQKGRADGPQARQLRISECIVGDE 63

Query: 80  TGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDN 139
           TG I+FTARNDQVD +K G+TV LRNAKIDM+KGSMRLAVDKWGR+E+TEPA+F VKED 
Sbjct: 64  TGVIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPASFKVKEDT 123

Query: 140 NLSLVEYELVNVAD 154
           N+SL+EYELVNV +
Sbjct: 124 NMSLIEYELVNVVE 137

[Close]

BLAST of Spg016796 vs. TAIR 10
Match: AT4G28440.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-46
Identity = 93/135 (68.89%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 26  RKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDE 85
           RKPVFVKVEQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECL+GDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 86  TGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDN 145
           TG ILFTARNDQVD +KPG TVILRN++IDMFKG+MRL VDKWGRIE T  A+F VKEDN
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 146 NLSLVEYELVNVADE 155
           NLSLVEYEL+NV  +
Sbjct: 138 NLSLVEYELINVGGD 152

[Close]

BLAST of Spg016796 vs. TAIR 10
Match: AT1G10590.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 177.9 bits (450), Expect = 6.0e-45
Identity = 90/136 (66.18%), Postives = 109/136 (80.15%), Query Frame = 0


Query: 19  AAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLV 78
           A A   LRKPVF KV +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECLV
Sbjct: 2   AEATSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECLV 61

Query: 79  GDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAVDKWGRIELT-EPANFVV 138
           GDETG I+FTARNDQVD +K G+ V LRNAKIDM+KGSMRLAVD+WGR+E+  EP +  V
Sbjct: 62  GDETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITV 121

Query: 139 KEDNNLSLVEYELVNV 152
           K+DNNLSL+EYELV+V
Sbjct: 122 KDDNNLSLIEYELVSV 137

[Close]

BLAST of Spg016796 vs. TAIR 10
Match: AT1G10590.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 177.9 bits (450), Expect = 6.0e-45
Identity = 90/136 (66.18%), Postives = 109/136 (80.15%), Query Frame = 0


Query: 19  AAARPGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLV 78
           A A   LRKPVF KV +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECLV
Sbjct: 16  AEATSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECLV 75

Query: 79  GDETGTILFTARNDQVDQVKPGTTVILRNAKIDMFKGSMRLAVDKWGRIELT-EPANFVV 138
           GDETG I+FTARNDQVD +K G+ V LRNAKIDM+KGSMRLAVD+WGR+E+  EP +  V
Sbjct: 76  GDETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITV 135

Query: 139 KEDNNLSLVEYELVNV 152
           K+DNNLSL+EYELV+V
Sbjct: 136 KDDNNLSLIEYELVSV 151

The following BLAST results are available for this feature:

BLAST of Spg016796 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899654.1	5.3e-75	95.45	uncharacterized protein At4g28440-like [Benincasa hispida]	[more]
XP_008463705.1	4.4e-74	93.51	PREDICTED: uncharacterized protein At4g28440-like [Cucumis melo] >KAA0066804.1 N...	[more]
XP_004146043.1	9.9e-74	93.51	uncharacterized protein At4g28440 [Cucumis sativus] >KGN55099.1 hypothetical pro...	[more]
XP_022139613.1	1.2e-71	92.21	uncharacterized protein At4g28440-like [Momordica charantia]	[more]
XP_023535412.1	4.5e-66	88.31	uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg016796 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49453	2.0e-45	68.89	Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 P...	[more]

BLAST of Spg016796 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DWE0	2.2e-74	93.51	Nucleic acid-binding OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384...	[more]
A0A1S3CKC4	2.2e-74	93.51	uncharacterized protein At4g28440-like OS=Cucumis melo OX=3656 GN=LOC103501787 P...	[more]
A0A0A0L242	4.8e-74	93.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G629450 PE=4 SV=1	[more]
A0A6J1CG19	5.9e-72	92.21	uncharacterized protein At4g28440-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1FBC1	2.8e-66	87.66	uncharacterized protein At4g28440-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]

BLAST of Spg016796 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33845.1	7.4e-51	67.95	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G23750.1	1.8e-49	67.91	Nucleic acid-binding, OB-fold-like protein	[more]
AT4G28440.1	1.4e-46	68.89	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.1	6.0e-45	66.18	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.3	6.0e-45	66.18	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 40..143 e-value: 1.9E-44 score: 152.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR31472	OS05G0244600 PROTEIN	coord: 9..154
None	No IPR available	PANTHER	PTHR31472:SF26	SUBFAMILY NOT NAMED	coord: 9..154
None	No IPR available	CDD	cd04491	SoSSB_OBF	coord: 44..127 e-value: 7.73165E-19 score: 73.8113
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 22..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg016796.1	Spg016796.1	mRNA