Spg016721 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg016721
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionzinc finger CCCH domain-containing protein 40-like
Locationscaffold9: 39399563 .. 39401966 (-)
RNA-Seq ExpressionSpg016721
SyntenySpg016721
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAAGCCCAAGCATTCTATTAATGCCTATCATTTAGCTTCGTGAAGCAAATTCCTCCTCTAATTTCCTCTTTATTTCTCGAATTCGAGCCTGTTTAAAGGGATTCTTTAATGGAGTCGTCCATCCGATGGATTCGCGCTTATTCTCAAAATCGTGCAGCTGGTGAGTCATCACTTTTATATATCTTCTATTTATTCTTGATTGCTTTAATTTTTTTTTTCTTTTGGTTCAATTTAGTTAGTGAGTTATCAACTGCCTCTCTATTATGTTTATTCTTAAGAGAAGTTATTTGTGTTGAGTTTATCTTGTTTACTAGACTTTTTTAAGGGTTTACTGTTAAAAGGTTGATGGATTTAATTTTGTGAGTTAGGCTTTGATTCTTTGCATGACTGTGAGAAGAAAAGAGTGTTAAGTGTTGTAATCTTTTGATACAGTGGAAAAAAGAAAGATGAAAAGTATGAGGAAGGGGAAAAAAGGTGAAAAGAAGAAAAAGAATAGTGCCATGAAAGGAGAAAAAAACGATAAAAGAAAAAAAAAACAGAAGAATTGGAGAAGAAAAACAAAAAACTGAGGGCTAGTGATGGATCTATTAATTTTATTTTTCCACATAATAGGTAAAATGCAGTTTAGATTGTTTATTTTGTTGTTTGGATAGCTTCTACTAATTTTAGTTTGTCCATGTAATAGCTAAAATGTGGATCAAAATCTCTTTCTCAGTAAGGTTCATTTGCAAAGCTAGTGGAAATGAACGTAACTTTGAGGAGTTGTTGCTAAGTTGAGATGCTGCTATATTTGAGAGGGATTAAAGCAAGAGTATGTAAGTTCAATGGAAATTAGACTTCAAAGCCCGTTTTGCTCTGTATAATGTTGGTAAGTGGACAAATAGATCCTAGCAGAGTACCCCATTCTCTTCTTTGCCGGTAATGTTAATTTAATGTTGCCTTGTAAAATTGTAACTTGCTTTGTTTACCTATTTTCCCATGTGGGCTTCATCACTTTTCCCCTTCCCTCGTGTGTGTTGCACTCAATCATAGCAAAGACAAAGAGCCCATGTACTTGAGCATGAGCCTTCAATAATCAGTCAAAAATGTGTCTTTCTTTTGGGATAGTGATTAATTACAGATGTTTTGGTTTTATTTTATGATGGGAAGATTACTGTTGGGTTTGGACAGGACTGAATTTGGCTTGATTGGCTGAAGAAATTGAATCTTCTTTATCTTCTTGCTTTTGTTGTGTGTGTGTTTTTTTTTAATGAATGAGTTGGAAATTTGTTTTGCCAACATGCTAAAATGAGTTGGAAATTTTGTGTAAGATTCATACAATCCTTTAAAATCTTATGATAATAAAATTGCTGATAGTCACCATCCTCTGTCCATAGTACTAAAATGTGTGATCCTATTCAGGGATTTTATCAGCTTGTCCATATCCAAATTTAGTTGTGGAAGCACTGGATTTTTTCATGTTCGAGGAGGTACGGCCAACCTTAATTTGTAAGAGCCTTCGGTCCAAACTTTACATTCATAACTTTTAGAAGTTTCATTTCCCTTGTCATCATTATGTTTGAGATCAAGACATTGTCTACGAGCTTGCGGGAATAAGCTTTGAGGGTCATCAAAAGGCATGGGAATGGTTTAAGGTATGCAATTCCCGACTATAAAAATTTATCAATCAATCTTTGCTTCATCCATATCAAAAGTGCAGTAAAAGTTGCAATTGTTATAAAAGTTGCAAGGGTTGCTTTGTTTGTTACTTTTCTTTTGAAATCTTCCTTTATCGTTAATCTGCATTGTTTTTATGTTGAATTGAAGTTCAATTGCAGCCAAATCAGGTTTCTTTCTCAAGTTAACACATCTATCATGATGAATTTAGTGGAAGTTTCCATTTGCTGGTATTATAAAGCTTTACTGTTTCCACATGAACTTGAGTAATGAGTAATGAAATATCTTATTAATGAAATTGGGAGGATGAAAAAACTTTATCTTAGTGCAATTTTTGCCAATAATTTATTCTGTTACGTAGTAATTAAGTGCATGATTTTTATCAATTTGTTTGTTTTTTTAATCATTTGTTGTTCCTTCATGGTATACTTCTTCCAATCTTTTGGTATGTTCGTGTTGTTTGTTGGAGTTCTCATTTGATTTGCTTGTTCTTAGGGTGCCAAAATATGGTTTTGAGACCCCTCTCCAAAATGTGCCAAAACTTGTTGGAATTTGGTTAGAAATGATTACAAGATTTGCATTCCGGGGGGTGCTCCATTTGTTATATGCATATTGTACTTGATATTTACGTTTAGGTTATGAAGCTTCTTAACAAGGTAGGAGAGATGCCTTCCCTAGAACCTCCAGAGGATGAGAGTATTAGAACCTTGTATGTGGGTGGACTTGATGATCGAGTCACTGAGTAA

mRNA sequence

ATGGATTCGCGCTTATTCTCAAAATCGTGCAGCTGGGATTTTATCAGCTTGTCCATATCCAAATTTAGTTGTGGAAGCACTGGATTTTTTCATGTTCGAGGAGATCAAGACATTGTCTACGAGCTTGCGGGAATAAGCTTTGAGGGTCATCAAAAGGCATGGGAATGGTTTAAGGTTATGAAGCTTCTTAACAAGGTAGGAGAGATGCCTTCCCTAGAACCTCCAGAGGATGAGAGTATTAGAACCTTGTATGTGGGTGGACTTGATGATCGAGTCACTGAGTAA

Coding sequence (CDS)

ATGGATTCGCGCTTATTCTCAAAATCGTGCAGCTGGGATTTTATCAGCTTGTCCATATCCAAATTTAGTTGTGGAAGCACTGGATTTTTTCATGTTCGAGGAGATCAAGACATTGTCTACGAGCTTGCGGGAATAAGCTTTGAGGGTCATCAAAAGGCATGGGAATGGTTTAAGGTTATGAAGCTTCTTAACAAGGTAGGAGAGATGCCTTCCCTAGAACCTCCAGAGGATGAGAGTATTAGAACCTTGTATGTGGGTGGACTTGATGATCGAGTCACTGAGTAA

Protein sequence

MDSRLFSKSCSWDFISLSISKFSCGSTGFFHVRGDQDIVYELAGISFEGHQKAWEWFKVMKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE
Homology
[Close]
BLAST of Spg016721 vs. NCBI nr
Match: XP_024194928.1 (zinc finger CCCH domain-containing protein 40 [Rosa chinensis] >PRQ41380.1 putative transcription factor C3H family [Rosa chinensis])

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-08
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 60  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE 95
           MKLLNK GEMPSLEPPEDESIRTLYVGGLD R+TE
Sbjct: 207 MKLLNKAGEMPSLEPPEDESIRTLYVGGLDGRITE 241

[Close]
BLAST of Spg016721 vs. NCBI nr
Match: KAF3951780.1 (hypothetical protein CMV_022606 [Castanea mollissima])

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-08
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 60  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE 95
           MKLLNK GEMPSLEPPEDESIRTLYVGGL++RVTE
Sbjct: 207 MKLLNKAGEMPSLEPPEDESIRTLYVGGLNERVTE 241

[Close]
BLAST of Spg016721 vs. NCBI nr
Match: CAB4270555.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-08
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 60  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE 95
           MKLLNK GEMPSLEPPEDESIRTLYVGGLD+R++E
Sbjct: 225 MKLLNKAGEMPSLEPPEDESIRTLYVGGLDERISE 259

[Close]
BLAST of Spg016721 vs. NCBI nr
Match: VVA12261.1 (PREDICTED: pre-mRNA-splicing factor RBM22 [Prunus dulcis])

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-08
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 60  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE 95
           MKLLNK GEMPSLEPPEDESIRTLYVGGLD+R++E
Sbjct: 280 MKLLNKAGEMPSLEPPEDESIRTLYVGGLDERISE 314

[Close]
BLAST of Spg016721 vs. NCBI nr
Match: XP_034202316.1 (zinc finger CCCH domain-containing protein 40-like [Prunus dulcis] >VVA12262.1 PREDICTED: pre-mRNA-splicing factor RBM22 [Prunus dulcis])

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-08
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 60  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE 95
           MKLLNK GEMPSLEPPEDESIRTLYVGGLD+R++E
Sbjct: 207 MKLLNKAGEMPSLEPPEDESIRTLYVGGLDERISE 241

[Close]
BLAST of Spg016721 vs. ExPASy Swiss-Prot
Match: Q6Z358 (Zinc finger CCCH domain-containing protein 49 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0281000 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-09
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 60  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE 95
           +KLL+K GEMPSL PP+DESIRTLY+GGLD RVTE
Sbjct: 207 LKLLSKAGEMPSLTPPDDESIRTLYIGGLDSRVTE 241

[Close]
BLAST of Spg016721 vs. ExPASy Swiss-Prot
Match: Q5SNN4 (Zinc finger CCCH domain-containing protein 40 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0170500 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.4e-09
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 60  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE 95
           +KLL K GEMPSL PP+DESIRTLY+GGL++R+TE
Sbjct: 207 LKLLGKAGEMPSLTPPDDESIRTLYIGGLNNRITE 241

[Close]
BLAST of Spg016721 vs. ExPASy Swiss-Prot
Match: Q9FL40 (Zinc finger CCCH domain-containing protein 53 OS=Arabidopsis thaliana OX=3702 GN=At5g07060 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.8e-08
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 60  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE 95
           MKLL K GEM +LEPPEDESI+TLYVGGL+ R+ E
Sbjct: 204 MKLLRKAGEMGTLEPPEDESIKTLYVGGLNSRIFE 238

[Close]
BLAST of Spg016721 vs. ExPASy Swiss-Prot
Match: Q9ZW36 (Zinc finger CCCH domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=At2g29580 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.6e-07
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 60  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE 95
           +KLL K GEM +LE PED+SIRTLYVGGL+ RV E
Sbjct: 207 LKLLGKAGEMGTLESPEDQSIRTLYVGGLNSRVLE 241

[Close]
BLAST of Spg016721 vs. ExPASy Swiss-Prot
Match: Q9LNV5 (Zinc finger CCCH domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=At1g07360 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-06
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 60  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE 95
           MKLL K GEM +LE P+DESI+TLYVGGL+ R+ E
Sbjct: 207 MKLLGKAGEMGTLESPDDESIKTLYVGGLNSRILE 241

[Close]
BLAST of Spg016721 vs. ExPASy TrEMBL
Match: A0A2P6R4M0 (Putative transcription factor C3H family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0446281 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.6e-09
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 60  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE 95
           MKLLNK GEMPSLEPPEDESIRTLYVGGLD R+TE
Sbjct: 207 MKLLNKAGEMPSLEPPEDESIRTLYVGGLDGRITE 241

[Close]
BLAST of Spg016721 vs. ExPASy TrEMBL
Match: A0A251MZZ8 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G143100 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.3e-09
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 60  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE 95
           MKLLNK GEMPSLEPPEDESIRTLYVGGLD+R++E
Sbjct: 207 MKLLNKAGEMPSLEPPEDESIRTLYVGGLDERISE 241

[Close]
BLAST of Spg016721 vs. ExPASy TrEMBL
Match: M5VLZ8 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G143100 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.3e-09
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 60  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE 95
           MKLLNK GEMPSLEPPEDESIRTLYVGGLD+R++E
Sbjct: 173 MKLLNKAGEMPSLEPPEDESIRTLYVGGLDERISE 207

[Close]
BLAST of Spg016721 vs. ExPASy TrEMBL
Match: A0A6J5VRS6 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS50774 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.3e-09
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 60  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE 95
           MKLLNK GEMPSLEPPEDESIRTLYVGGLD+R++E
Sbjct: 207 MKLLNKAGEMPSLEPPEDESIRTLYVGGLDERISE 241

[Close]
BLAST of Spg016721 vs. ExPASy TrEMBL
Match: A0A6P5T7X8 (zinc finger CCCH domain-containing protein 40-like isoform X1 OS=Prunus avium OX=42229 GN=LOC110764590 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.3e-09
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 60  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE 95
           MKLLNK GEMPSLEPPEDESIRTLYVGGLD+R++E
Sbjct: 207 MKLLNKAGEMPSLEPPEDESIRTLYVGGLDERISE 241

[Close]
BLAST of Spg016721 vs. TAIR 10
Match: AT5G07060.1 (CCCH-type zinc fingerfamily protein with RNA-binding domain )

HSP 1 Score: 57.8 bits (138), Expect = 5.6e-09
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 60  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE 95
           MKLL K GEM +LEPPEDESI+TLYVGGL+ R+ E
Sbjct: 204 MKLLRKAGEMGTLEPPEDESIKTLYVGGLNSRIFE 238

[Close]
BLAST of Spg016721 vs. TAIR 10
Match: AT5G07060.2 (CCCH-type zinc fingerfamily protein with RNA-binding domain )

HSP 1 Score: 57.8 bits (138), Expect = 5.6e-09
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 60  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE 95
           MKLL K GEM +LEPPEDESI+TLYVGGL+ R+ E
Sbjct: 204 MKLLRKAGEMGTLEPPEDESIKTLYVGGLNSRIFE 238

[Close]
BLAST of Spg016721 vs. TAIR 10
Match: AT2G29580.1 (CCCH-type zinc fingerfamily protein with RNA-binding domain )

HSP 1 Score: 54.3 bits (129), Expect = 6.1e-08
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 60  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE 95
           +KLL K GEM +LE PED+SIRTLYVGGL+ RV E
Sbjct: 207 LKLLGKAGEMGTLESPEDQSIRTLYVGGLNSRVLE 241

[Close]
BLAST of Spg016721 vs. TAIR 10
Match: AT1G07360.1 (CCCH-type zinc fingerfamily protein with RNA-binding domain )

HSP 1 Score: 53.9 bits (128), Expect = 8.0e-08
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 60  MKLLNKVGEMPSLEPPEDESIRTLYVGGLDDRVTE 95
           MKLL K GEM +LE P+DESI+TLYVGGL+ R+ E
Sbjct: 207 MKLLGKAGEMGTLESPDDESIKTLYVGGLNSRILE 241

The following BLAST results are available for this feature:
BLAST of Spg016721 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_024194928.11.2e-0891.43zinc finger CCCH domain-containing protein 40 [Rosa chinensis] >PRQ41380.1 putat... [more]
KAF3951780.11.5e-0891.43hypothetical protein CMV_022606 [Castanea mollissima][more]
CAB4270555.11.5e-0888.57unnamed protein product [Prunus armeniaca][more]
VVA12261.11.5e-0888.57PREDICTED: pre-mRNA-splicing factor RBM22 [Prunus dulcis][more]
XP_034202316.11.5e-0888.57zinc finger CCCH domain-containing protein 40-like [Prunus dulcis] >VVA12262.1 P... [more]
BLAST of Spg016721 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6Z3581.1e-0980.00Zinc finger CCCH domain-containing protein 49 OS=Oryza sativa subsp. japonica OX... [more]
Q5SNN45.4e-0974.29Zinc finger CCCH domain-containing protein 40 OS=Oryza sativa subsp. japonica OX... [more]
Q9FL407.8e-0874.29Zinc finger CCCH domain-containing protein 53 OS=Arabidopsis thaliana OX=3702 GN... [more]
Q9ZW368.6e-0771.43Zinc finger CCCH domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN... [more]
Q9LNV51.1e-0668.57Zinc finger CCCH domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=... [more]
BLAST of Spg016721 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P6R4M05.6e-0991.43Putative transcription factor C3H family OS=Rosa chinensis OX=74649 GN=RchiOBHm_... [more]
A0A251MZZ87.3e-0988.57Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G143100 PE=4 SV=1[more]
M5VLZ87.3e-0988.57Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G143100 PE=4 SV=1[more]
A0A6J5VRS67.3e-0988.57Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS50774 PE=4 S... [more]
A0A6P5T7X87.3e-0988.57zinc finger CCCH domain-containing protein 40-like isoform X1 OS=Prunus avium OX... [more]
BLAST of Spg016721 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G07060.15.6e-0974.29CCCH-type zinc fingerfamily protein with RNA-binding domain [more]
AT5G07060.25.6e-0974.29CCCH-type zinc fingerfamily protein with RNA-binding domain [more]
AT2G29580.16.1e-0871.43CCCH-type zinc fingerfamily protein with RNA-binding domain [more]
AT1G07360.18.0e-0868.57CCCH-type zinc fingerfamily protein with RNA-binding domain [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg016721.1Spg016721.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003723 RNA binding