Spg016719 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg016719
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon protein
Location	scaffold9: 39806767 .. 39809124 (-)
RNA-Seq Expression	Spg016719
Synteny	Spg016719

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGAGGAAGAACCTCGGGTGACGTCGGACAGTCAAACTTACGCAACTGGAAATTCGTCACATGGTAGTAGGAGAAAGAGATCTGGGCCTAACATGCACATCGCAGAAGCTGTGAGAGAAGGAATTGAAAGATTGGAATTCCATAATTCCGTAAAGCGGAAGCGTGATTGCGACCGATTCGTAATTAATTTTGTTTAATCTAAAATACCAATACATTGGCAATAATATTAGAACTATTCTAAATATATATTAAGGCTAAGCATACAAAAATATTAGATCTAAATCTAATTTATAAAGTAACAAATTACTTACTCTCGTTGACGACTCAGATTAAATTCACAAACTGCTTGTGAATTAATCACGAATTAGTGCGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACTTGAGACTTGTGGGAGCCTTTGGGAGAATTCTCTAAGAGTAGGAGAATGAATGGGATACCTTTCACCCCACCCCAGGGGTCCTATATATAGTAAAGGCCAAGACCTTTTTCCTAATAGGAAAAGGGAGATCTTTTCCTAATAGGAAAAAGTCTATAATTTTAATAAATAATTAATTAATTCCATAATTAATTAATTTCCCAATTAAATTTCATATATTTAATCTTAGGGATTTTATTAAAATTAAAATTAATATGAATCAAATTCATATTAAATTTATTTTATCTCTTTCAAATATTTTCTTTCCTAATAGGAAAAGGTCTCTAATTTTAATAAATAATTAATTAATTCCATAATTAATTAATTTACCCAATTAAATATCATATATTTAATCTTAGGGATTTTATTAAAATTAAAATTAATATGAATCCAATTCATATTAAATTTATTTGAACTCTTTCAAATACTTTCTCTCAAGAATTAATTTTTTTTTTAAATTAATTCAAAAATTATATTATAAAGTTTCATAAACTATGAAACTTTATAATATAATGCATCAATATACATTATACGATTCCCCAAATAAATTGAACACTTTCAATTTACAATTTATACTTAATTGCCTCAAGTCTCTTTACGAGCTACCAGTGGGACCTAATGGACCTACAGATCAGAAGCTCCAACGATACGAGACTAATTGGCCAAACTCATTGACCAAGTTTAGTCAACATTCGTTAACTGTGGGTCACTCCACTAAAGACCCACAGCTGCATTCTTCTCACTATAGAATATTTCTGTGTCCACGGATATCGACCAAGAAGTAAGTCAATCCTTCACGTGTGTTCGAAACACCAACTGGGTCAAATTACCGTTTTACCCCTGGGTTACCTCTGGTTCCTTAAGTACCACTGATTCCTCTAATGAACAAGTTGTTTAGGGTCCAACCACTAAACAGGAGTTCCTCTCAGGCTAGGAGAGGACGGCGCGCCTTTGTTCAAGCCCTATAATCAGCCCTTAAGGGAACACACATCTACTTACCCCAATAGGGGAAGGAGTGAATTCCATCTTGTACTGTTATGTTCCCAGCCCCCATTCGGTCTTGCCCCTGAAATGGTAGGCTTATTGAGTCGGCGAACTGGCCACTCTCACCCATACAAATCTAAGGACAGTCCCTCCTAAAAGGGGTTCATAACAGACTCAGGATTGAGATTGAGTTACCTAGGTCATCCTATTGAAATAGAAACCTAAACTAGTTAACGGCGTTACATCTAGTGGTTACTATTTCGCGGTCCGGTCTTATGCAAACTCATTGCATAGGATACCCTCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGCCGTATCACATAGTGTCACCAGGATAAGGTACCCAGCCTTATCCCTATACTATAGACCATTTAGGTTGTTACTTGGACACTGATCCCCGTATGTCCCCACATACTAGTCCAAGTTTCATTTAAACAACCTTGGATCTTAGTTTATTGGATTTAAACAACCTTGGATCTTAGTTTATTGGATTTAGGGTTTATTAATGCAAACTCGATTATTCAATAACCAAATTACTGAATTACTCAAATAACACTTTATTGAGATCGATTAATATGTTTCATTTACTATCTACGAGTTTTAGGGCATAAAACCCAACAGGAATGGCCTCGTTCACATAACAACTTAAGTCCACTGCTGACTGACCAGACAAAAAACATGCCACATAGGCAGAGTTCTGGGATAAAATTGTCTCCCACTTGATGGAGGTACCCAACCTGGAGAACCGAAAAAGGGTGAAGCTCATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAACTTCTTCTCCATTTCTGCTCCTCCGAAGTTGGAGTATTGTGAATACCTCTTGGACAAACACAGTTGA

mRNA sequence

ATGTCAGAGGAAGAACCTCGGGTGACGTCGGACAGTCAAACTTACGCAACTGGAAATTCGTCACATGGTAGTAGGAGAAAGAGATCTGGGCCTAACATGCACATCGCAGAAGCTGTGAGAGAAGGAATTGAAAGATTGGAATTCCATAATTCCGTAAAGCGGAAGCGTGATTGCGACCGATTCTGCGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACTTGAGACTTGTGGGAGCCTTTGGGAGAATTCTCTAAGAGCAGAGTTCTGGGATAAAATTGTCTCCCACTTGATGGAGGTACCCAACCTGGAGAACCGAAAAAGGGTGAAGCTCATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAACTTCTTCTCCATTTCTGCTCCTCCGAAGTTGGAGTATTGTGAATACCTCTTGGACAAACACAGTTGA

Coding sequence (CDS)

ATGTCAGAGGAAGAACCTCGGGTGACGTCGGACAGTCAAACTTACGCAACTGGAAATTCGTCACATGGTAGTAGGAGAAAGAGATCTGGGCCTAACATGCACATCGCAGAAGCTGTGAGAGAAGGAATTGAAAGATTGGAATTCCATAATTCCGTAAAGCGGAAGCGTGATTGCGACCGATTCTGCGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACTTGAGACTTGTGGGAGCCTTTGGGAGAATTCTCTAAGAGCAGAGTTCTGGGATAAAATTGTCTCCCACTTGATGGAGGTACCCAACCTGGAGAACCGAAAAAGGGTGAAGCTCATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAACTTCTTCTCCATTTCTGCTCCTCCGAAGTTGGAGTATTGTGAATACCTCTTGGACAAACACAGTTGA

Protein sequence

MSEEEPRVTSDSQTYATGNSSHGSRRKRSGPNMHIAEAVREGIERLEFHNSVKRKRDCDRFCEHHHYGYTGMTLRLETCGSLWENSLRAEFWDKIVSHLMEVPNLENRKRVKLMDILFNNMKATENFFSISAPPKLEYCEYLLDKHS

Homology

[Close]

BLAST of Spg016719 vs. NCBI nr
Match: XP_038899283.1 (uncharacterized protein LOC120086622 [Benincasa hispida] >XP_038899284.1 uncharacterized protein LOC120086622 [Benincasa hispida] >XP_038899285.1 uncharacterized protein LOC120086622 [Benincasa hispida] >XP_038899286.1 uncharacterized protein LOC120086622 [Benincasa hispida])

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-04
Identity = 38/146 (26.03%), Postives = 67/146 (45.89%), Query Frame = 0


Query: 1   MSEEEPRVTSDSQTYATGNSSHGSRRKRSGPNMHIAEAVREGIERLEFHNSVKRKRDCDR 60
           +S++E   T     +   NS  GS+RK  G +  + +  +  ++                
Sbjct: 98  LSQDEFHGTPTGFGFEGDNSLRGSKRKHHGYHSELVKVFKNAMD---------------- 157

Query: 61  FCEHHHYGYTGMTLRLETCGSLWENSLRAEFWDKIVSHLMEVPNLENRKRVKLMDILFNN 120
                   +    L+     S  +++   E   K+V+ L ++P L+ ++++K M+I+F N
Sbjct: 158 --------FANDQLKSIAEWSKKQHATEVELRAKVVNKLNDIPKLQTQQKMKFMNIIFRN 217

Query: 121 MKATENFFSISAPPKLEYCEYLLDKH 147
           +  TE+F SI A  KLEYCE LL  H
Sbjct: 218 VHNTESFLSIPADMKLEYCELLLLNH 219

[Close]

BLAST of Spg016719 vs. NCBI nr
Match: XP_038880512.1 (ER membrane protein complex subunit 6 [Benincasa hispida])

HSP 1 Score: 55.8 bits (133), Expect = 3.5e-04
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 83  WENSLRA---EFWDKIVSHLMEVPNLENRKRVKLMDILFNNMKATENFFSISAPPKLEYC 142
           W    RA   E   K+VS L ++P L NRKRV+L+ I+F +++ T++F SI    KL+YC
Sbjct: 14  WPKEKRATEIELCAKVVSQLQDIPELHNRKRVELIQIIFCSVQDTKSFSSIPIALKLDYC 73

Query: 143 EYLLDKH 147
             LL ++
Sbjct: 74  NLLLQEN 80

[Close]

BLAST of Spg016719 vs. ExPASy TrEMBL
Match: A0A5D3BZU3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00280 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 6.5e-04
Identity = 40/131 (30.53%), Postives = 57/131 (43.51%), Query Frame = 0


Query: 19  NSSHGSRRKRSGPNMHIAEAVREGIERLEFHNSVKRKRDCDRFCEHHHYGYTGMTLRLET 78
           N S GS+RKR   +  + E +       EF N                        +L+T
Sbjct: 159 NYSSGSKRKRGSKHYEMVEVISSA---TEFGND-----------------------QLKT 218

Query: 79  CGSLWENSLRA---EFWDKIVSHLMEVPNLENRKRVKLMDILFNNMKATENFFSISAPPK 138
               W    RA   E   ++V  L ++P L ++ R KLM ILF +++A E F SI    K
Sbjct: 219 ITD-WPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLK 262

Query: 139 LEYCEYLLDKH 147
           LEYC  LL+ +
Sbjct: 279 LEYCNILLENN 262

[Close]

BLAST of Spg016719 vs. ExPASy TrEMBL
Match: A0A5D3CVB7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00360 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 8.5e-04
Identity = 23/61 (37.70%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 84  ENSLRAEFWDKIVSHLMEVPNLENRKRVKLMDILFNNMKATENFFSISAPPKLEYCEYLL 143
           + +++ E    +V  L ++P L+NR R K++ ILF++++  E F SI    KLEYC  LL
Sbjct: 142 KRAMKVELRALVVKQLQDIPKLQNRDRPKIIQILFHSVEGIEGFLSIPTELKLEYCNVLL 201

Query: 144 D 145
           +
Sbjct: 202 E 202

[Close]

BLAST of Spg016719 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 8.5e-04
Identity = 24/60 (40.00%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 84  ENSLRAEFWDKIVSHLMEVPNLENRKRVKLMDILFNNMKATENFFSISAPPKLEYCEYLL 143
           + ++  E   ++V  L ++P L ++ R KLM ILF +++A E F SI    KLEYC  LL
Sbjct: 243 KRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEYCNILL 302

[Close]

BLAST of Spg016719 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 8.5e-04
Identity = 24/60 (40.00%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 84  ENSLRAEFWDKIVSHLMEVPNLENRKRVKLMDILFNNMKATENFFSISAPPKLEYCEYLL 143
           + ++  E   ++V  L ++P L ++ R KLM ILF +++A E F SI    KLEYC  LL
Sbjct: 243 KRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEYCNILL 302

The following BLAST results are available for this feature:

BLAST of Spg016719 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899283.1	1.6e-04	26.03	uncharacterized protein LOC120086622 [Benincasa hispida] >XP_038899284.1 unchara...	[more]
XP_038880512.1	3.5e-04	41.79	ER membrane protein complex subunit 6 [Benincasa hispida]	[more]

BLAST of Spg016719 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg016719 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BZU3	6.5e-04	30.53	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CVB7	8.5e-04	37.70	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U0H7	8.5e-04	40.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	8.5e-04	40.00	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]

BLAST of Spg016719 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg016719.1	Spg016719.1	mRNA