Spg016635 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg016635
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGlutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial
Locationscaffold9: 41550119 .. 41554433 (+)
RNA-Seq ExpressionSpg016635
SyntenySpg016635
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTAAGACGTGACGTGAAAGATAGAGAAGGCGCAGCAGCAAATTTGGCCATAGGTTCCATTTTTTTCGACCTTCACTGTTGGAAATGGGAAGTAAAGCTCTTCCTCTTCTCAAAGGAGCTCTATCACTTCCATCGAAGCACCAAATCTTCATCTCTCGCGGCTTGCATACACTACCTGTTTCTAACATCAGAATTCGAAAATGTTCGACTGCTTCAGGAATTCGAGCTTCTCTTCAACCTCCCGATGTGCCTCGTTTAGCTGAAACAGCTCGAATTTCCCTCACTCCAAGTGAGGTATGCGAGGCCTTCACCACGTCAATGTTTTCTTCTGTTTCTTCGATCTTTTTTCAAGAAAAATCTACTTCTTACTTTTCGGATTTGTGTTCTTTTGGTTGTCTATTTCAGGTTGAAGAATTTGCTCCTAAAATTCGACAAGTTGTTGACTGGTAAGTTTCTTTCTCTCTCTCTCTCTCTCTCTCACACACACACACAAAGCACACACACTCACAGCAACTAATAGACATTGAAACACATTGGGCTGTCTAGATAAATTTAGTGCATGTTAACGCAAAAACCAAGAATATCTAAGAAGTAAAAGCATGTTATTCGAAGTATGTGACCTCCGCGAATGTGGCTTCTGTTGGTAATACTCAGACTTAGTTATCGGAAATGTTGTTTTGTTTCCTGAGGTGAGACTGAAGGAGATGATTTGTGTTGGACCTTGGAGGTGGAATTTGTCCTCGATTATTGAATTTTGGCCTCTAGGTAACTTACTATGAGACAATTGCCTATTATGCCCTAGACATTGTGGGGGAATTCTTCATAGGCAGGTTGTAAATTGAGATTCTATGAGTTTACATTTACTCCTTTCAACAGAAGAAAGAGTGACGAGATCAAATTTCAAGCGAGATTACAATATTTGTTCTGTTTACATGTTCAAGTGTGACATTTAGGGAGATGTAAAAACAAGAAAAAGCCAGGTAGTGGACAACTTCTCAAAAGACAGGAAGTTAAATAATTTTGTTGTTTATATAACCTTTTTTACACTAACTTTCGGGGTTAAAGATGATCTCATGGGCGAATTGAGCACTCAAAATGCTGTTCTGATATCTCTTTTTTCACTTTGAAGTTAAGAGTACTCAAAAGTCAAAACTTCCTCATAATGTTCTTTTTTTAAAATTTTTTATCATTGTGTAAGGATAAACTCATGAATCTACTGGATCCTCCAAATTAGGCTTGCTAGTCTTGTTAGTTGTTACATTGGAAAATTTGTTGTACCTTTGTGGTACAAACATGCTTTTCAGACTCTTACGTTCTTTCAAGTTACAACTCTTTAATCTCACCAGCCTTTGAGAATATTGAGTAGTATTCAGAAGGGCCTAAGGAACAAAAGTCGCAACATTATTACCACCAGCCTCTGATAATAATAATAGCAATATCCCCCGAATTTCTTCATGACTCCCATGACAGCACAAGATCAAACGACTGAAGCTTTAGGAGTGAAGGTTTGGTTGCACCAAAGTTGTTCAACGCACTGGGAGGCATCATTGGGAAAGCACTATGACAAAAGAGAATTCCGATTTTCTTCTTACAGAGAATGCACCAGCTTGAGAGAAAAGAGAACATGGGGTTCCTTTTATGAACCATAACATCAGAATTTAAGCCCCCGTGAGACGGGGTCAAACTAAAAATGTCACCTCTTTGGGCATTTCTTCTTCTAAATAACCTTAATGAACTGCTTTGAAGGGGCATCACCACCATCTCCTTTATTATCAAGGAACTAGGAATTTTGAAAAAAGTGGCAATTAGAATCCAAACTCTTCCATGGTGGCCACCTACCTAGGATATTTAATATCCTACGAGTTTCCTTGACAACCAAATGTAGTAGGGTCAGGCGGTTGTCCCGTGAGATTAGTTGAGGTGCGCGTAAGCTGGCCCGGACACTCACGGATATATATATATATATAAAAAAAAAAAAAAAAAAAAAAAAATCCAAACTCCAACAGGGCATAGCCCTTACTTAGGAATTCAAACATTTTCCAGAAGAAATGAAAGATATGCTCCCCTAAGAAGTTCTATATCACTAAGTAGCCTTCTAAACTTGAGGTTCCAATATTTGCCACATTCCAGTGATCCGGGCCAGGATGGTGTCAGAATTAGTAAGTTGGGAAATTTTGGAAAATTTCTCCTTTAGAGGTTGTGAGGTGTTTCATTCATCTGACCAAATAGAAATTGACGCCATTACACACCATAGCATTCAGAAACTACCTTCATCCTCTCTCTACTTTTTGCAATGAAGTTCCAGGGGTTTTTGCCGTTGTAGTCCGGGCCAGGATGGTGTCAGAATTAGTAAGTTGGGAAATTTTGGAAAATTTCTCCTTTAGAGGTTGTGAGGTGTTTCATTCATCTGACCAAATAGAAATTGACGCCATTACACACCATAGCATTCAGAAACTACCTTCATCCTCTCTCTACTTTTTGCAATGAAGTTCCAGGGGTTTTTGCCGTTGTAGTTTCCAAACTAAAGCGGCCATTTTTAGTCAAACCTTATTTGCTAATAATGATGTTTATCTGGGTATTTTTTTTGAGCTTGCCGCTGAGGTCTCCTTCCTAAAGTACCAAGTCTCCACTTCATGAGGTGACTTCGCCACTGTGGCGCCAATCCCCTTATGCCACGAAATGTTTTTTAAACTCTTTTCAACTTTTGGAGTTTTCTTTTAACAAATTTTTAAAAATAAAAGGAAGTAGATTGAGATGCCGGCTAGAACTGACTGGATTAAAATCTTAAAATTGTATGTTGGTTGATTCACTCAAGAGTCAAGACTAAATGCTTGAGATAGAAGCACTCAGAGCATGAGTTATTCATTTTTCTATGGAATTGTTCATTCTGTTAACTCTATTCTCCTGGCTGTTGTATCCTTTGGTTTCTATAAACTTTAATATAATTATATTATGTTTCAGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATCGAGCCTTCCATTAGAGCAGGTGCATGCAACCACTCTTACTAGTTTATTATTGTCAATCATTTTGCAACTTGTTTGTTGTTCTTCTTCTAGCCATGCCTTTGCTTGTTTCTCACTATTAAGTGTTGACTTCTAATTGCATGTGTCTTTTCAAAATGGAAATTTTACATCACAAAATTTCATTGGAAAATAATAATCATAAAACTTGGAGGTATTATCTCTTTCTCGCGACGGACACTAGTGAGCTAATGATGCACATCTTGGAGGGGATAGCAGCAATAGGACCCAAAACTTTGTACTGTTTACTTGTGCTATCATGGCCAAGATAATTGATTACGATTTCAGATACCAAAAAAGCAGCTCCCCCACCCACAGATTTTTATATATATTTCTGGGAGAGCATTGGAGCATGAATGCTACTATGTGATTAAAATGCTAAAACCTCAAGGCAAACAACTGTTGTGCAGCAAAAATTAATACTAATTTTCCTAATATTTACAGATACTGAAGGTGGCAATCAGCGGAATGATGTTTCTAAAACATTTGAAAATAGGTAATCTGGTTGTTTCTCAACTTGGGCTATCACAACGTTTGGTAGGAAATTTTGGTCATAACTTCTATTATTTTTGTTTCCCCCAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTTGATGAGCCGTATATCAGAGTTCCTAAAGTTCTGAATAAGGAGTAGTTGCAAAGGTAGGTGGCTTGTTTGATCTGTCACCGTCATTCATTAATGGCATGTTCTTCAACATCTTATGTCTTTGAAATGATTAATTTTGCTACAGGTTACTAGATGATATTTGAATTACAATTCGAATTAACCATCCGTTTAATCTTTAATCTTAGTTGAAATGTTTAATTTGCGCATATTTTTTAATTTCACTCTAGTTAGGGTTAAGTTGGCTGATCACCGCACTTTCTGGTTGTCACGTAAGATGTTTATCCAAAACTCAGATTCTAAGTTGAGAAAGGGACCTGTCCTCGTTGAGCTTATCAACTTTCCTTGGAGAGATGATGGAGACAGATTAAGGTTAATCTAACCTCATTATCTCATAAATCTGAATTAGATGACTCTTCCATTTTTATCTTTTCAAAATTAAAATCTGAATGAACTTCAGAAAATCCTGAGATTCTACCAACTTAACCCCTTATTTATTTTGTTTTCCCCTTATTATAATTATAATTTTTGTATTTCATTTCCTTTTTAGTTTAACAAATGTTAGGTAGATGATCAAACATTCGACCTTAAGATATATGTTTAACTACTGAATTATGCTATTTTGCTACTTTGAA

mRNA sequence

ATGGGAAGTAAAGCTCTTCCTCTTCTCAAAGGAGCTCTATCACTTCCATCGAAGCACCAAATCTTCATCTCTCGCGGCTTGCATACACTACCTGTTTCTAACATCAGAATTCGAAAATGTTCGACTGCTTCAGGAATTCGAGCTTCTCTTCAACCTCCCGATGTGCCTCGTTTAGCTGAAACAGCTCGAATTTCCCTCACTCCAAGTGAGGTAACTTACTATGAGACAATTGCCTATTATGCCCTAGACATTGTGGGGGAATTCTTCATAGGCAGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATCGAGCCTTCCATTAGAGCAGATACTGAAGGTGGCAATCAGCGGAATGATGTTTCTAAAACATTTGAAAATAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTTGATGAGCCGTATATCAGAGTTCCTAAAGTTCTGAATAAGGAGTAG

Coding sequence (CDS)

ATGGGAAGTAAAGCTCTTCCTCTTCTCAAAGGAGCTCTATCACTTCCATCGAAGCACCAAATCTTCATCTCTCGCGGCTTGCATACACTACCTGTTTCTAACATCAGAATTCGAAAATGTTCGACTGCTTCAGGAATTCGAGCTTCTCTTCAACCTCCCGATGTGCCTCGTTTAGCTGAAACAGCTCGAATTTCCCTCACTCCAAGTGAGGTAACTTACTATGAGACAATTGCCTATTATGCCCTAGACATTGTGGGGGAATTCTTCATAGGCAGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATCGAGCCTTCCATTAGAGCAGATACTGAAGGTGGCAATCAGCGGAATGATGTTTCTAAAACATTTGAAAATAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTTGATGAGCCGTATATCAGAGTTCCTAAAGTTCTGAATAAGGAGTAG

Protein sequence

MGSKALPLLKGALSLPSKHQIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTVDLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE
Homology
[Close]
BLAST of Spg016635 vs. NCBI nr
Match: XP_022143239.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Momordica charantia] >XP_022143247.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 212.6 bits (540), Expect = 2.3e-51
Identity = 117/155 (75.48%), Postives = 126/155 (81.29%), Query Frame = 0 

Query: 1   MGSKALPLLKGALSLPS-KHQIFISRG--LHTLPVSNIRIRKCSTASGIRASLQPPDVPR 60
           MGSKALPLLKGALSLPS + QIFI  G   HTLP+S+ +IRKCST   IRASLQPPDVPR
Sbjct: 1   MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNKIRKCSTTPRIRASLQPPDVPR 60

Query: 61  LAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTVDLQSIEPSIRADTEGGNQ 120
           LAETARISLTP+EV  +       +D         FGQLQTVDLQSIEPSIRADTEGGNQ
Sbjct: 61  LAETARISLTPTEVEEFAPKIRQVVD--------WFGQLQTVDLQSIEPSIRADTEGGNQ 120

Query: 121 RNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE 153
           RND+S+TFENREAMIGAVPVFDEPYIRVPKVLNKE
Sbjct: 121 RNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE 147

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BLAST of Spg016635 vs. NCBI nr
Match: XP_008466091.1 (PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis melo] >KAA0038633.1 glutamyl-tRNA(Gln) amidotransferase subunit C [Cucumis melo var. makuwa] >TYK31232.1 glutamyl-tRNA(Gln) amidotransferase subunit C [Cucumis melo var. makuwa])

HSP 1 Score: 211.8 bits (538), Expect = 4.0e-51
Identity = 115/153 (75.16%), Postives = 124/153 (81.05%), Query Frame = 0 

Query: 1   MGSKALPLLKGALSLPS-KHQIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLA 60
           MGSKALPLLKGA S PS K QIFIS   H+LPVSNI IRK STASG+ ASLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60

Query: 61  ETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTVDLQSIEPSIRADTEGGNQRN 120
           +TARISLTP++V  +       +D         FGQLQTVDLQSIEPSIRADTEGGNQRN
Sbjct: 61  QTARISLTPTQVEEFAPKITQVVD--------WFGQLQTVDLQSIEPSIRADTEGGNQRN 120

Query: 121 DVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE 153
           DV +TFENREAMIGAVPVFDEPYI+VPKVLNKE
Sbjct: 121 DVPETFENREAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of Spg016635 vs. NCBI nr
Match: XP_038897282.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida] >XP_038897283.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida])

HSP 1 Score: 210.7 bits (535), Expect = 8.9e-51
Identity = 115/153 (75.16%), Postives = 125/153 (81.70%), Query Frame = 0 

Query: 1   MGSKALPLLKGALSLPS-KHQIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLA 60
           MGSKALPLLKGA S PS K +IFIS GLH+LP S IRIRKCSTAS I ASLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSCPSLKLRIFISTGLHSLPASLIRIRKCSTASRILASLQPPDVPRLA 60

Query: 61  ETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTVDLQSIEPSIRADTEGGNQRN 120
           ETARISLTP++V  +       +D         FGQLQTVDLQSIEP+IRADTEGGNQRN
Sbjct: 61  ETARISLTPTQVEEFAPKIRQVVD--------WFGQLQTVDLQSIEPAIRADTEGGNQRN 120

Query: 121 DVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE 153
           D+ +TFENREAMIGAVPVFDEPYI+VPKVLNKE
Sbjct: 121 DIPETFENREAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of Spg016635 vs. NCBI nr
Match: XP_023521629.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo] >XP_023521637.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.5 bits (532), Expect = 2.0e-50
Identity = 117/153 (76.47%), Postives = 124/153 (81.05%), Query Frame = 0 

Query: 1   MGSKALPLLKGALSLPSKH-QIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLA 60
           M S AL LLKGA SLPS + QIFIS  L++LPVSNIRIRKCSTA GIRASLQPPDVPRLA
Sbjct: 1   MASGALRLLKGASSLPSLNPQIFISTSLNSLPVSNIRIRKCSTAPGIRASLQPPDVPRLA 60

Query: 61  ETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTVDLQSIEPSIRADTEGGNQRN 120
           ETARISL PSEV  +       +D         FGQLQ VDLQSIEPSIRADTEGGNQR+
Sbjct: 61  ETARISLNPSEVEEFAPKIRQVVD--------WFGQLQAVDLQSIEPSIRADTEGGNQRD 120

Query: 121 DVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE 153
           DVS+TFENREAMIGAVPVFDEPYIRVPKVLNKE
Sbjct: 121 DVSETFENREAMIGAVPVFDEPYIRVPKVLNKE 145

[Close]
BLAST of Spg016635 vs. NCBI nr
Match: XP_022941306.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita moschata] >XP_022941307.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita moschata] >KAG6608102.1 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 208.8 bits (530), Expect = 3.4e-50
Identity = 116/153 (75.82%), Postives = 125/153 (81.70%), Query Frame = 0 

Query: 1   MGSKALPLLKGALSLPSKH-QIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLA 60
           MGS AL LLKGA SLPS + QIFIS  L++LPVS+IRIRKCSTA GIRASLQPPDVPRLA
Sbjct: 1   MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA 60

Query: 61  ETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTVDLQSIEPSIRADTEGGNQRN 120
           ETARISL P+EV  +       +D         FGQLQ VDLQSIEPSIRADTEGGNQR+
Sbjct: 61  ETARISLNPNEVEEFAPKIRQVVD--------WFGQLQAVDLQSIEPSIRADTEGGNQRD 120

Query: 121 DVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE 153
           DVS+TFENREAMIGAVPVFDEPYIRVPKVLNKE
Sbjct: 121 DVSETFENREAMIGAVPVFDEPYIRVPKVLNKE 145

[Close]
BLAST of Spg016635 vs. ExPASy Swiss-Prot
Match: D7STK2 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vitis vinifera OX=29760 GN=GATC PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.4e-30
Identity = 78/152 (51.32%), Postives = 100/152 (65.79%), Query Frame = 0 

Query: 1   MGSKALPLLKGALSLPSKHQIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLAE 60
           MGS+AL LLK   +  ++  +F S+       S   IR  + +   R++L PPD+PRLAE
Sbjct: 1   MGSRALLLLK---ATTAETLLFTSKS----TFSKALIRNSTRSFSTRSALLPPDLPRLAE 60

Query: 61  TARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTVDLQSIEPSIRADTEGGNQRND 120
           TARISLTP EV  +       +D         FGQLQ VDLQSIEPSIRADTEG N R+D
Sbjct: 61  TARISLTPHEVEEFAPKIRQVID--------WFGQLQAVDLQSIEPSIRADTEGDNLRDD 120

Query: 121 VSKTFENREAMIGAVPVFDEPYIRVPKVLNKE 153
             +TFENREA+I A+P ++EPY++VPKVLNK+
Sbjct: 121 SPETFENREAIIAAIPSYEEPYLKVPKVLNKD 137

[Close]
BLAST of Spg016635 vs. ExPASy Swiss-Prot
Match: B9RRX2 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ricinus communis OX=3988 GN=GATC PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.6e-29
Identity = 78/153 (50.98%), Postives = 99/153 (64.71%), Query Frame = 0 

Query: 1   MGSKALPLLKGALSLPSKHQIFISRGLHTLPVSNIRI-RKCSTASGIRASLQPPDVPRLA 60
           MGS+AL LLK  ++LP KHQI         P S +   R+ S  +   +SLQPPDV RLA
Sbjct: 1   MGSRALLLLK--VALPLKHQIKCLNYTKITPASELLTKRRFSIKATNGSSLQPPDVSRLA 60

Query: 61  ETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTVDLQSIEPSIRADTEGGNQRN 120
           ETARISL  +EV  +       +D         FGQLQ VDL S+EP+IRAD+EG N R+
Sbjct: 61  ETARISLNQNEVEEFAPKIRQVID--------WFGQLQAVDLNSVEPAIRADSEGENLRD 120

Query: 121 DVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE 153
           DV +TF  REA+I AVP +++PY++VPKVLNKE
Sbjct: 121 DVPETFSEREAIIAAVPSYEKPYVKVPKVLNKE 143

[Close]
BLAST of Spg016635 vs. ExPASy Swiss-Prot
Match: B9INH0 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Populus trichocarpa OX=3694 GN=GATC PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.9e-28
Identity = 77/153 (50.33%), Postives = 99/153 (64.71%), Query Frame = 0 

Query: 1   MGSKALPLLKGALSLPSKHQI-FISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLA 60
           MGS+A+ LLKG    P KH I F+       P  +IR R  + A+   +SL+PPDV RLA
Sbjct: 1   MGSRAVLLLKG--PSPPKHSILFLLNHKKISPAPSIR-RFTTKATANGSSLEPPDVARLA 60

Query: 61  ETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTVDLQSIEPSIRADTEGGNQRN 120
           ETARISLTP +V  +       +D         +  L +VDL S+EPSIRADTEG N R+
Sbjct: 61  ETARISLTPQQVEEFGPKIRQVID---------WHALLSVDLDSVEPSIRADTEGDNLRH 120

Query: 121 DVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE 153
           D  +TFENREA+I AVP +++PY++VPKVLNKE
Sbjct: 121 DNPETFENREAIIAAVPNYEDPYVKVPKVLNKE 141

[Close]
BLAST of Spg016635 vs. ExPASy Swiss-Prot
Match: F4JV80 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=GATC PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-23
Identity = 56/119 (47.06%), Postives = 81/119 (68.07%), Query Frame = 0 

Query: 34  NIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRF 93
           N RI +  ++    + LQPPDV RLA+TARISLTP+E+   ET     +D         F
Sbjct: 45  NHRIARSYSSDSDSSVLQPPDVARLAQTARISLTPAEIEECETKIRRVID--------WF 104

Query: 94  GQLQTVDLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE 153
           GQLQ VD+ S+EP+IRA+ +GGN R D  +TF+NR+++  ++P F++ Y++VPK+LNKE
Sbjct: 105 GQLQQVDVNSVEPAIRAEMDGGNLREDAPETFDNRDSIRASIPSFEDAYLKVPKILNKE 155

[Close]
BLAST of Spg016635 vs. ExPASy Swiss-Prot
Match: A2XK57 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=GATC PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.5e-21
Identity = 55/113 (48.67%), Postives = 74/113 (65.49%), Query Frame = 0 

Query: 41  STASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTVD 100
           + A+    +L+PPD+PRLA  ARISL+P E   +       +D         FGQLQ VD
Sbjct: 49  AAAAAGSGALEPPDLPRLANAARISLSPEEAEEFAPKIRQVVD--------WFGQLQAVD 108

Query: 101 LQSIEPSIRADTEGGNQ-RNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE 153
           L+S+EPS+RA T  GN  R D  +TF NR+A+I +VP +D+PYI+VP+VLNKE
Sbjct: 109 LESVEPSLRAGTAAGNSLREDRPETFTNRDAIIESVPSYDDPYIKVPRVLNKE 153

[Close]
BLAST of Spg016635 vs. ExPASy TrEMBL
Match: A0A6J1CQ90 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013151 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.1e-51
Identity = 117/155 (75.48%), Postives = 126/155 (81.29%), Query Frame = 0 

Query: 1   MGSKALPLLKGALSLPS-KHQIFISRG--LHTLPVSNIRIRKCSTASGIRASLQPPDVPR 60
           MGSKALPLLKGALSLPS + QIFI  G   HTLP+S+ +IRKCST   IRASLQPPDVPR
Sbjct: 1   MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNKIRKCSTTPRIRASLQPPDVPR 60

Query: 61  LAETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTVDLQSIEPSIRADTEGGNQ 120
           LAETARISLTP+EV  +       +D         FGQLQTVDLQSIEPSIRADTEGGNQ
Sbjct: 61  LAETARISLTPTEVEEFAPKIRQVVD--------WFGQLQTVDLQSIEPSIRADTEGGNQ 120

Query: 121 RNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE 153
           RND+S+TFENREAMIGAVPVFDEPYIRVPKVLNKE
Sbjct: 121 RNDISETFENREAMIGAVPVFDEPYIRVPKVLNKE 147

[Close]
BLAST of Spg016635 vs. ExPASy TrEMBL
Match: A0A5A7T6R5 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis melo var. makuwa OX=1194695 GN=GATC PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.9e-51
Identity = 115/153 (75.16%), Postives = 124/153 (81.05%), Query Frame = 0 

Query: 1   MGSKALPLLKGALSLPS-KHQIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLA 60
           MGSKALPLLKGA S PS K QIFIS   H+LPVSNI IRK STASG+ ASLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60

Query: 61  ETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTVDLQSIEPSIRADTEGGNQRN 120
           +TARISLTP++V  +       +D         FGQLQTVDLQSIEPSIRADTEGGNQRN
Sbjct: 61  QTARISLTPTQVEEFAPKITQVVD--------WFGQLQTVDLQSIEPSIRADTEGGNQRN 120

Query: 121 DVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE 153
           DV +TFENREAMIGAVPVFDEPYI+VPKVLNKE
Sbjct: 121 DVPETFENREAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of Spg016635 vs. ExPASy TrEMBL
Match: A0A1S3CQE8 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103503618 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.9e-51
Identity = 115/153 (75.16%), Postives = 124/153 (81.05%), Query Frame = 0 

Query: 1   MGSKALPLLKGALSLPS-KHQIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLA 60
           MGSKALPLLKGA S PS K QIFIS   H+LPVSNI IRK STASG+ ASLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60

Query: 61  ETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTVDLQSIEPSIRADTEGGNQRN 120
           +TARISLTP++V  +       +D         FGQLQTVDLQSIEPSIRADTEGGNQRN
Sbjct: 61  QTARISLTPTQVEEFAPKITQVVD--------WFGQLQTVDLQSIEPSIRADTEGGNQRN 120

Query: 121 DVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE 153
           DV +TFENREAMIGAVPVFDEPYI+VPKVLNKE
Sbjct: 121 DVPETFENREAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of Spg016635 vs. ExPASy TrEMBL
Match: A0A6J1FM33 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111446647 PE=3 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.6e-50
Identity = 116/153 (75.82%), Postives = 125/153 (81.70%), Query Frame = 0 

Query: 1   MGSKALPLLKGALSLPSKH-QIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLA 60
           MGS AL LLKGA SLPS + QIFIS  L++LPVS+IRIRKCSTA GIRASLQPPDVPRLA
Sbjct: 1   MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA 60

Query: 61  ETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTVDLQSIEPSIRADTEGGNQRN 120
           ETARISL P+EV  +       +D         FGQLQ VDLQSIEPSIRADTEGGNQR+
Sbjct: 61  ETARISLNPNEVEEFAPKIRQVVD--------WFGQLQAVDLQSIEPSIRADTEGGNQRD 120

Query: 121 DVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE 153
           DVS+TFENREAMIGAVPVFDEPYIRVPKVLNKE
Sbjct: 121 DVSETFENREAMIGAVPVFDEPYIRVPKVLNKE 145

[Close]
BLAST of Spg016635 vs. ExPASy TrEMBL
Match: A0A6J1IVG1 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111480328 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 4.8e-50
Identity = 115/153 (75.16%), Postives = 124/153 (81.05%), Query Frame = 0 

Query: 1   MGSKALPLLKGALSLPSKH-QIFISRGLHTLPVSNIRIRKCSTASGIRASLQPPDVPRLA 60
           MGS AL LLKGA SLP  + QIFIS  L+TLPVSNIRI+KCSTA GIRASLQPPDVPRLA
Sbjct: 1   MGSGALRLLKGASSLPLLNPQIFISTSLNTLPVSNIRIQKCSTAPGIRASLQPPDVPRLA 60

Query: 61  ETARISLTPSEVTYYETIAYYALDIVGEFFIGRFGQLQTVDLQSIEPSIRADTEGGNQRN 120
           ETARISL PSEV  +       +D         FGQL+ VDLQSIEPSIRADTEGGNQR+
Sbjct: 61  ETARISLNPSEVEEFAPKIRQVVD--------WFGQLEAVDLQSIEPSIRADTEGGNQRD 120

Query: 121 DVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE 153
           DVS+TFENREA+IGAVPVFDEPYIRVPKVLNKE
Sbjct: 121 DVSETFENREALIGAVPVFDEPYIRVPKVLNKE 145

[Close]
BLAST of Spg016635 vs. TAIR 10
Match: AT4G32915.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 110.9 bits (276), Expect = 8.9e-25
Identity = 56/119 (47.06%), Postives = 81/119 (68.07%), Query Frame = 0 

Query: 34  NIRIRKCSTASGIRASLQPPDVPRLAETARISLTPSEVTYYETIAYYALDIVGEFFIGRF 93
           N RI +  ++    + LQPPDV RLA+TARISLTP+E+   ET     +D         F
Sbjct: 45  NHRIARSYSSDSDSSVLQPPDVARLAQTARISLTPAEIEECETKIRRVID--------WF 104

Query: 94  GQLQTVDLQSIEPSIRADTEGGNQRNDVSKTFENREAMIGAVPVFDEPYIRVPKVLNKE 153
           GQLQ VD+ S+EP+IRA+ +GGN R D  +TF+NR+++  ++P F++ Y++VPK+LNKE
Sbjct: 105 GQLQQVDVNSVEPAIRAEMDGGNLREDAPETFDNRDSIRASIPSFEDAYLKVPKILNKE 155

The following BLAST results are available for this feature:
BLAST of Spg016635 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022143239.12.3e-5175.48glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Momo... [more]
XP_008466091.14.0e-5175.16PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochon... [more]
XP_038897282.18.9e-5175.16glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Beni... [more]
XP_023521629.12.0e-5076.47glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucu... [more]
XP_022941306.13.4e-5075.82glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucu... [more]
BLAST of Spg016635 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
D7STK22.4e-3051.32Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vi... [more]
B9RRX22.6e-2950.98Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ri... [more]
B9INH04.9e-2850.33Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Po... [more]
F4JV801.3e-2347.06Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ar... [more]
A2XK574.5e-2148.67Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Or... [more]
BLAST of Spg016635 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CQ901.1e-5175.48Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Mo... [more]
A0A5A7T6R51.9e-5175.16Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
A0A1S3CQE81.9e-5175.16Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
A0A6J1FM331.6e-5075.82Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
A0A6J1IVG14.8e-5075.16Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
BLAST of Spg016635 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G32915.18.9e-2547.06FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translation... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003837Glu-tRNAGln amidotransferase C subunitPANTHERPTHR15004UNCHARACTERIZEDcoord: 26..152
NoneNo IPR availablePANTHERPTHR15004:SF2GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT C, CHLOROPLASTIC/MITOCHONDRIALcoord: 26..152
IPR036113Glu-tRNAGln amidotransferase superfamily, subunit CSUPERFAMILY141000Glu-tRNAGln amidotransferase C subunitcoord: 50..148

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg016635.1Spg016635.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070681 glutaminyl-tRNAGln biosynthesis via transamidation
biological_process GO:0032543 mitochondrial translation
biological_process GO:0006450 regulation of translational fidelity
cellular_component GO:0009507 chloroplast
cellular_component GO:0030956 glutamyl-tRNA(Gln) amidotransferase complex
cellular_component GO:0005739 mitochondrion
molecular_function GO:0005524 ATP binding
molecular_function GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
molecular_function GO:0016740 transferase activity