Spg016565 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg016565
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Glycosyl hydrolase family 35 protein
Location	scaffold9: 45331026 .. 45332661 (-)
RNA-Seq Expression	Spg016565
Synteny	Spg016565

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATCCCTCATTTCCACTGTTGTTTTAAACCCCTCATGGACGAGCCCCTTTCAAGGCCTTCTCCCGCTAAGACTTCTTGGAACAGGGTCTGTTTTTCTTCTTCTTTTTCTGGGTACATTCCCTTTTTTTTTTTTGGGTCATTTTGACATTATCTCATTATGAAGCTTTCTGGGTTTTGGGTTTTGTTTTTGGTGCTCCAAACTACTTTATTGCTGCTTTTCTTTCCCAGCTATATTAATGCTGCCTCCTCCAGCTCGGGTAATTTTGAACTTAATGTTTGTTTAAGCACATTTTTAGTTCTTTACTTGCTTGTTGTTTAAAATGTTACTGGCCCCTGTTCCTCTCTGCTTTGTTTCATCTGATGGCCGGCCTTCTCACTGTCACTTGAATCTTACTGCATTTGTATTAGCAGCTTTCAAAATGTGTTCTATTTGATTACTGATTGTAATGTGTTCTTTTTCATACTAAGGTTAGTGGGATTCTTTGGTTTTTTATGCTAAATTAATTGAACCTTTCTTTCTCCGGGATTACTCAAGCTAATTTAGAACTATTCTGTCGTCCTTCTAATGCTTCTATTCTGTAACACTATGTTCTTCTTTCACTTTCTCTAGCTACTAAGTCATGTCTCAATTATCAATCTGCATATCAATTTATCTCTAACAATGTTGGTATGCTCATATTAAAGAATGTCTGCTGGTTGAATTACATATTTAAGCAGAACTAGCCTCAACTTTCCATTTGATTTACACCTGGTTCAGCCATTTTCAAGTCCAGTTTAAACATTTTCCTCCCCAAGTATTGAAATTCGTAGTTACAGCTTCAAGTATATAGCTAGAGATTGTGTTGTTTTGCTTATCTGAGTTGTAACTTTTACATGCTGTTCTGCTGTAACTTTGCATGTTGATTTTGCTGTGCTTTTCTCGACTGCAATTGCAGATATGGCTCTGAACCACCAGCATGTTAAGCCAAATGAATGCTTGTCTGACATGCCATTAAAAAGGAAGCTGAAGGTACTTGCTTTTTAAAGCCTTTAAATCAGACAAGTCATTTTCACTTTTGTCACCATCTTCATGGTACATCCTTACTTAGAGAAGAACATAGTTTCTTCCGAATTAATAGGTTCATGATTGATGAGATTGGCTACAACTGTATAATGAATAAATCCTCTTTTGGTCCTCAGTTCCAAAATGATGAACATAATAGCCCGAGGAAAAAGAAGGTTCTCCCTGGTGATCTAAATCTTGATGACTACCATCCCATTGATCCAGTTCCAAGTTCAAAGACATCAGTAAAACCCGGGCCGATAGAGCACGGCGCTCCTCTCCTCCCTCATATGCCAAACCCTCCACCCCCCGATCAGCCGGGCGATTACGTTTAGAGAGCAGAAACATTTTCATCTCCTCTACTAATTGTCTTAAATAATCTAAGTTTGTTTCTCATAGAACCAAACCAACTACGTTATCCTGTCTCTTTTATATTGTGTAAAAAGTTGTCTTGAGTATTGTCATTCCTCTTATGTATCCTTTAAACTATCTCTTCTGTTATCTACGGAAACAAGACAATGTGCTAGAATGATATATTTAGAGAACCAATGTCCTTAGATGAAATGTCCTTCTCACCTGCTTCACAAAAT

mRNA sequence

ATGCCATCCCTCATTTCCACTGTTGTTTTAAACCCCTCATGGACGAGCCCCTTTCAAGGCCTTCTCCCGCTAAGACTTCTTGGAACAGGGTCTGTTTTTCTTCTTCTTTTTCTGGATATGGCTCTGAACCACCAGCATGTTAAGCCAAATGAATGCTTGTCTGACATGCCATTAAAAAGGAAGCTGAAGTTCCAAAATGATGAACATAATAGCCCGAGGAAAAAGAAGGTTCTCCCTGGTGATCTAAATCTTGATGACTACCATCCCATTGATCCAGTTCCAAGTTCAAAGACATCAGTAAAACCCGGGCCGATAGAGCACGGCGCTCCTCTCCTCCCTCATATGCCAAACCCTCCACCCCCCGATCAGCCGGGCGATTACGTTTAG

Coding sequence (CDS)

ATGCCATCCCTCATTTCCACTGTTGTTTTAAACCCCTCATGGACGAGCCCCTTTCAAGGCCTTCTCCCGCTAAGACTTCTTGGAACAGGGTCTGTTTTTCTTCTTCTTTTTCTGGATATGGCTCTGAACCACCAGCATGTTAAGCCAAATGAATGCTTGTCTGACATGCCATTAAAAAGGAAGCTGAAGTTCCAAAATGATGAACATAATAGCCCGAGGAAAAAGAAGGTTCTCCCTGGTGATCTAAATCTTGATGACTACCATCCCATTGATCCAGTTCCAAGTTCAAAGACATCAGTAAAACCCGGGCCGATAGAGCACGGCGCTCCTCTCCTCCCTCATATGCCAAACCCTCCACCCCCCGATCAGCCGGGCGATTACGTTTAG

Protein sequence

MPSLISTVVLNPSWTSPFQGLLPLRLLGTGSVFLLLFLDMALNHQHVKPNECLSDMPLKRKLKFQNDEHNSPRKKKVLPGDLNLDDYHPIDPVPSSKTSVKPGPIEHGAPLLPHMPNPPPPDQPGDYV

Homology

[Close]

BLAST of Spg016565 vs. NCBI nr
Match: XP_022977124.1 (uncharacterized protein LOC111477287 [Cucurbita maxima])

HSP 1 Score: 156.4 bits (394), Expect = 1.7e-34
Identity = 95/174 (54.60%), Postives = 104/174 (59.77%), Query Frame = 0


Query: 1   MPSLISTVVLNPSWTSPF-QGL---------------LP--------------LRLLGTG 60
           MP  IS+V+LNPSWT+ F QG+               LP              ++L G  
Sbjct: 1   MPFHISSVLLNPSWTTSFEQGVSSFVSFSGHILVFKFLPSSFWACSAFRHFCIMKLSGFW 60

Query: 61  SVFLLL-----------------FLDMALNHQHVKPNECLSDMPLKRKLKFQNDEHNSPR 120
             FL+L                   DMAL+H HV PNECLSD+P  RKLKFQ DEHNS  
Sbjct: 61  VFFLVLQTTLLLSCFPSHLNASSTSDMALSHHHVNPNECLSDLPFNRKLKFQTDEHNSLG 120

Query: 121 KKKVLPGDLNLDDYHPIDPVPSSKTSVKPGPIEHGAPLLPHMPNPPPPDQPGDY 128
           KK V PGDL LDDY  IDPVPSSKTSVKPGPIEHGAPLLPHMP PPPPDQPGDY
Sbjct: 121 KKMVHPGDLKLDDYPTIDPVPSSKTSVKPGPIEHGAPLLPHMPIPPPPDQPGDY 174

[Close]

BLAST of Spg016565 vs. NCBI nr
Match: XP_038899330.1 (uncharacterized protein LOC120086661 [Benincasa hispida] >XP_038899331.1 uncharacterized protein LOC120086661 [Benincasa hispida] >XP_038899332.1 uncharacterized protein LOC120086661 [Benincasa hispida])

HSP 1 Score: 156.0 bits (393), Expect = 2.2e-34
Identity = 74/89 (83.15%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 39  DMALNHQHVKPNECLSDMPLKRKLKFQNDEHNSPRKKKVLPGDLNLDDYHPIDPVPSSKT 98
           D+ALN+ HV PN+CLSD+PL RKLKFQ DEH S  +KKV PGDLNLDDYHPIDPVPSSKT
Sbjct: 33  DVALNNHHVNPNKCLSDIPLNRKLKFQTDEHYSLGRKKVHPGDLNLDDYHPIDPVPSSKT 92

Query: 99  SVKPGPIEHGAPLLPHMPNPPPPDQPGDY 128
           SVKPGPIEHGAPLLPHMPN PPP QPGDY
Sbjct: 93  SVKPGPIEHGAPLLPHMPNSPPPHQPGDY 121

[Close]

BLAST of Spg016565 vs. NCBI nr
Match: KAG6591414.1 (hypothetical protein SDJN03_13760, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154.1 bits (388), Expect = 8.3e-34
Identity = 74/89 (83.15%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 39  DMALNHQHVKPNECLSDMPLKRKLKFQNDEHNSPRKKKVLPGDLNLDDYHPIDPVPSSKT 98
           DMAL+H HV PNECLSD+P  RKLKFQ D+HNS  KKKV PGDL LDDY  IDPVPSSKT
Sbjct: 103 DMALSHHHVNPNECLSDIPFNRKLKFQTDKHNSLGKKKVHPGDLKLDDYPSIDPVPSSKT 162

Query: 99  SVKPGPIEHGAPLLPHMPNPPPPDQPGDY 128
           SVKPGPIEHGAPLLPHMP PPPPDQPGDY
Sbjct: 163 SVKPGPIEHGAPLLPHMPIPPPPDQPGDY 191

[Close]

BLAST of Spg016565 vs. NCBI nr
Match: XP_022937047.1 (uncharacterized protein LOC111443464 [Cucurbita moschata])

HSP 1 Score: 154.1 bits (388), Expect = 8.3e-34
Identity = 92/174 (52.87%), Postives = 102/174 (58.62%), Query Frame = 0


Query: 1   MPSLISTVVLNPSWTSPF-QGLLP-----------------------------LRLLGTG 60
           MP  IS+V+LNPSW + F QG+                               ++L G  
Sbjct: 1   MPFHISSVLLNPSWMTSFEQGVCSFVSFSQHILVFKFLASSFWACSAFPHYCIMKLSGLW 60

Query: 61  SVFLLL-----------------FLDMALNHQHVKPNECLSDMPLKRKLKFQNDEHNSPR 120
             FL+L                   DMAL+H HV PNECLSD+P  RKLKFQ D+HNS  
Sbjct: 61  VFFLVLQTTLLLSCFPSYLNASSTSDMALSHHHVSPNECLSDIPFNRKLKFQTDKHNSLG 120

Query: 121 KKKVLPGDLNLDDYHPIDPVPSSKTSVKPGPIEHGAPLLPHMPNPPPPDQPGDY 128
           KKKV PGDL LDDY  IDPVPSSKTSVKPGPIEHGAPLLPHMP PPPPDQPGDY
Sbjct: 121 KKKVHPGDLKLDDYPTIDPVPSSKTSVKPGPIEHGAPLLPHMPIPPPPDQPGDY 174

[Close]

BLAST of Spg016565 vs. NCBI nr
Match: XP_022155067.1 (uncharacterized protein LOC111021399 isoform X2 [Momordica charantia])

HSP 1 Score: 153.7 bits (387), Expect = 1.1e-33
Identity = 73/92 (79.35%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 39  DMALNHQHVKPNECLSDMPLKRKLKFQNDEHNSPRKKKVLPGDLNLDDYHPIDPVPSSKT 98
           DMALNH+H++PNE  S +PL RKLKFQNDE++SPR+ KV  GDLNLDDYHPIDPVPSSKT
Sbjct: 33  DMALNHRHLEPNESFSAIPLNRKLKFQNDEYDSPRRNKVHQGDLNLDDYHPIDPVPSSKT 92

Query: 99  SVKPGPIEHGAPLLPHMPNPPPPD--QPGDYV 129
           SVKPGPIEHG PLLPH+PNPPPPD  QPGD+V
Sbjct: 93  SVKPGPIEHGTPLLPHIPNPPPPDQPQPGDFV 124

[Close]

BLAST of Spg016565 vs. ExPASy TrEMBL
Match: A0A6J1IQK4 (uncharacterized protein LOC111477287 OS=Cucurbita maxima OX=3661 GN=LOC111477287 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 8.1e-35
Identity = 95/174 (54.60%), Postives = 104/174 (59.77%), Query Frame = 0


Query: 1   MPSLISTVVLNPSWTSPF-QGL---------------LP--------------LRLLGTG 60
           MP  IS+V+LNPSWT+ F QG+               LP              ++L G  
Sbjct: 1   MPFHISSVLLNPSWTTSFEQGVSSFVSFSGHILVFKFLPSSFWACSAFRHFCIMKLSGFW 60

Query: 61  SVFLLL-----------------FLDMALNHQHVKPNECLSDMPLKRKLKFQNDEHNSPR 120
             FL+L                   DMAL+H HV PNECLSD+P  RKLKFQ DEHNS  
Sbjct: 61  VFFLVLQTTLLLSCFPSHLNASSTSDMALSHHHVNPNECLSDLPFNRKLKFQTDEHNSLG 120

Query: 121 KKKVLPGDLNLDDYHPIDPVPSSKTSVKPGPIEHGAPLLPHMPNPPPPDQPGDY 128
           KK V PGDL LDDY  IDPVPSSKTSVKPGPIEHGAPLLPHMP PPPPDQPGDY
Sbjct: 121 KKMVHPGDLKLDDYPTIDPVPSSKTSVKPGPIEHGAPLLPHMPIPPPPDQPGDY 174

[Close]

BLAST of Spg016565 vs. ExPASy TrEMBL
Match: A0A6J1FA15 (uncharacterized protein LOC111443464 OS=Cucurbita moschata OX=3662 GN=LOC111443464 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 4.0e-34
Identity = 92/174 (52.87%), Postives = 102/174 (58.62%), Query Frame = 0


Query: 1   MPSLISTVVLNPSWTSPF-QGLLP-----------------------------LRLLGTG 60
           MP  IS+V+LNPSW + F QG+                               ++L G  
Sbjct: 1   MPFHISSVLLNPSWMTSFEQGVCSFVSFSQHILVFKFLASSFWACSAFPHYCIMKLSGLW 60

Query: 61  SVFLLL-----------------FLDMALNHQHVKPNECLSDMPLKRKLKFQNDEHNSPR 120
             FL+L                   DMAL+H HV PNECLSD+P  RKLKFQ D+HNS  
Sbjct: 61  VFFLVLQTTLLLSCFPSYLNASSTSDMALSHHHVSPNECLSDIPFNRKLKFQTDKHNSLG 120

Query: 121 KKKVLPGDLNLDDYHPIDPVPSSKTSVKPGPIEHGAPLLPHMPNPPPPDQPGDY 128
           KKKV PGDL LDDY  IDPVPSSKTSVKPGPIEHGAPLLPHMP PPPPDQPGDY
Sbjct: 121 KKKVHPGDLKLDDYPTIDPVPSSKTSVKPGPIEHGAPLLPHMPIPPPPDQPGDY 174

[Close]

BLAST of Spg016565 vs. ExPASy TrEMBL
Match: A0A6J1DND6 (uncharacterized protein LOC111021399 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111021399 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.3e-34
Identity = 73/92 (79.35%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 39  DMALNHQHVKPNECLSDMPLKRKLKFQNDEHNSPRKKKVLPGDLNLDDYHPIDPVPSSKT 98
           DMALNH+H++PNE  S +PL RKLKFQNDE++SPR+ KV  GDLNLDDYHPIDPVPSSKT
Sbjct: 33  DMALNHRHLEPNESFSAIPLNRKLKFQNDEYDSPRRNKVHQGDLNLDDYHPIDPVPSSKT 92

Query: 99  SVKPGPIEHGAPLLPHMPNPPPPD--QPGDYV 129
           SVKPGPIEHG PLLPH+PNPPPPD  QPGD+V
Sbjct: 93  SVKPGPIEHGTPLLPHIPNPPPPDQPQPGDFV 124

[Close]

BLAST of Spg016565 vs. ExPASy TrEMBL
Match: A0A6J1DLK4 (uncharacterized protein LOC111021399 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021399 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.3e-34
Identity = 73/92 (79.35%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 39  DMALNHQHVKPNECLSDMPLKRKLKFQNDEHNSPRKKKVLPGDLNLDDYHPIDPVPSSKT 98
           DMALNH+H++PNE  S +PL RKLKFQNDE++SPR+ KV  GDLNLDDYHPIDPVPSSKT
Sbjct: 35  DMALNHRHLEPNESFSAIPLNRKLKFQNDEYDSPRRNKVHQGDLNLDDYHPIDPVPSSKT 94

Query: 99  SVKPGPIEHGAPLLPHMPNPPPPD--QPGDYV 129
           SVKPGPIEHG PLLPH+PNPPPPD  QPGD+V
Sbjct: 95  SVKPGPIEHGTPLLPHIPNPPPPDQPQPGDFV 126

[Close]

BLAST of Spg016565 vs. ExPASy TrEMBL
Match: A0A6J1DQ33 (uncharacterized protein LOC111021399 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111021399 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 3.4e-33
Identity = 72/91 (79.12%), Postives = 81/91 (89.01%), Query Frame = 0


Query: 40  MALNHQHVKPNECLSDMPLKRKLKFQNDEHNSPRKKKVLPGDLNLDDYHPIDPVPSSKTS 99
           MALNH+H++PNE  S +PL RKLKFQNDE++SPR+ KV  GDLNLDDYHPIDPVPSSKTS
Sbjct: 1   MALNHRHLEPNESFSAIPLNRKLKFQNDEYDSPRRNKVHQGDLNLDDYHPIDPVPSSKTS 60

Query: 100 VKPGPIEHGAPLLPHMPNPPPPD--QPGDYV 129
           VKPGPIEHG PLLPH+PNPPPPD  QPGD+V
Sbjct: 61  VKPGPIEHGTPLLPHIPNPPPPDQPQPGDFV 91

[Close]

BLAST of Spg016565 vs. TAIR 10
Match: AT5G01075.1 (Glycosyl hydrolase family 35 protein )

HSP 1 Score: 55.1 bits (131), Expect = 4.9e-08
Identity = 24/41 (58.54%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 82  LNLDDYH-PIDPVPSSKTSVKPGPIEHGAPLLPHMPNPPPP 122
           + L+DY+ P+DP P++K S+KPGPIEHG PL P++P PP P
Sbjct: 28  VGLEDYNFPVDPTPTTKASIKPGPIEHGTPLNPYIPKPPSP 68

The following BLAST results are available for this feature:

BLAST of Spg016565 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022977124.1	1.7e-34	54.60	uncharacterized protein LOC111477287 [Cucurbita maxima]	[more]
XP_038899330.1	2.2e-34	83.15	uncharacterized protein LOC120086661 [Benincasa hispida] >XP_038899331.1 unchara...	[more]
KAG6591414.1	8.3e-34	83.15	hypothetical protein SDJN03_13760, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022937047.1	8.3e-34	52.87	uncharacterized protein LOC111443464 [Cucurbita moschata]	[more]
XP_022155067.1	1.1e-33	79.35	uncharacterized protein LOC111021399 isoform X2 [Momordica charantia]	[more]

BLAST of Spg016565 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg016565 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IQK4	8.1e-35	54.60	uncharacterized protein LOC111477287 OS=Cucurbita maxima OX=3661 GN=LOC111477287...	[more]
A0A6J1FA15	4.0e-34	52.87	uncharacterized protein LOC111443464 OS=Cucurbita moschata OX=3662 GN=LOC1114434...	[more]
A0A6J1DND6	5.3e-34	79.35	uncharacterized protein LOC111021399 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DLK4	5.3e-34	79.35	uncharacterized protein LOC111021399 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DQ33	3.4e-33	79.12	uncharacterized protein LOC111021399 isoform X3 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Spg016565 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01075.1	4.9e-08	58.54	Glycosyl hydrolase family 35 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..82
None	No IPR available	PANTHER	PTHR37249:SF3	BNAANNG14020D PROTEIN	coord: 26..126
None	No IPR available	PANTHER	PTHR37249	OS03G0206201 PROTEIN	coord: 26..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg016565.1	Spg016565.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane