Spg016563 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg016563
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein DCL homolog, chloroplastic-like
Location	scaffold9: 45473441 .. 45478202 (-)
RNA-Seq Expression	Spg016563
Synteny	Spg016563

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGCTTCGTGTAGTCACTTCATGCTCAGAACTGAGCTGCTCTCCACATGAAAATTTGATCCTCATGGCTACTTCTTTGCTACTCAGGGGGCATCCTCTCCTCCGGTTAGCGCTCAGGCAGTGCGGGCTATGTACAGGGATCGTGCAGGTGGCTCGCCGGTCTTACTGCACTGCCACGGCGGCGTCTACTCCACCGGACGGCAACTTAACATCTGCTGAAAATACTACCTCAGTGTTGAGTGCCAGTGACCCACCCAAGTACCAAAGGTGGGACGAGCCTGATTATCGAAAGTGGAAGAACCAGGAAGAGGAAATTCTCAGCGACATCGAGCCTATCATATCCCTCACAAAAGAGATCCTCCACTCTAATAGGTTTGTCCGGTTTCCGCAATTTCGCCCCGAAAGTTTATTCTCTATGTTAAAGGCACTATGTCTTTTCGTTTTAGTTGCTGAGAAACTGTTTGAGAAAAGAATGTTGGAAGATTGTGTTTTTCTTTATGGGCTGCTAGAAAAGAAACCTCTTTAGTTTCGAACAATATATTATATCAAAGCGTAGATTGGAAAAGCAATTTTTGTAAAATTCAAAGAGAGACACATAGAACATGTTTTGAGTCAGAACGTAGTAAAAAATTTTCATTTGTAAATAAACCATAAATTTTCCGTCCAAGAACCACCTTTTTACTCATGATAAACTCAAGAGCATGAAAGATTGTAAAGCGAAAATGTACCTGAAGCTATCTTTAGAAGTTGATTAGCGGGTAGATGGGAATGGTAAAGTAAGGAGAAAAGTTAATATGCAGCGAATAACTTCTTAGTAATTGACCTCAAGTTATTAGGTTTTCGTTACTTCTAATTTGAATCAATTTGAAATGGTATCTAGTATGTTTTTTCATGGCAATATGATAACTACATTCGTAAGTCAACTCCCAGCTAGATCATTTTATTTGAATCACTTGATAAATAGCATTTGACATTTACATGCGTGATCCCGGATGTTGATACCTTCCAGCAACAATAGCAACTACAGATAAGCTTTCAAATATATTATAGTAGAAAGAAAAATGAATACTGGAATTAGGTTTAATGTCAGTGTGTTTTATGAATCATTTCTTAATTTTCTTATGGATTTGGGATCAACTTTCTATGGCCTCTTAAAGAACGAGTGTGCCTTTGACTTTACTTTATACCATCAGAGGGGCATACTTCTCCATTAGGTGTCGTTTGTCAGCTGTGTGCTCGTAGCTGAAATTTTGCTGTTATTTTCATTCAGTCAATAAATTTAACAATTAGAACCCAGTTAGAAAGAAAAAACTTGCAATATCAAAACTGTGGTTGTGACCTTATGAAAGTATTGGTCTAACATATAGAACTCTCTCGAACATGAATTGTCTTCTTAAATAATGAGCTCATCTTTCAGCTTTATGCGAGTAGCCAGATGCACAGCTGGGAGGAGGAAATATTATTGCATGTTTGGTAGTTTCATTTTGGGAGAGAGTCAAGCCTCTCAAATTGTCTAAGACTCGCTTCTTTTTCCTTTTACTTCGTGCTCTTTATTATTAGCAAACTCAGATTTCCGTTGAAAATATTAACATTATTTCTTGACACACAATATTTGCTACGTTCTCTTCCACTTGGTTGCTTACTGGAGTCATGATTGTAATCTTTATGCTCCTCTTTGATCTTTTCCATTTTGAATAGTATTCAATGCATATTATTATGAAAATTAAGATCAAAAGTTATGCTCAGTGAGAACTAGTGGATGACCATGAAGCTTTTAACTGGTAAAAGCAGTCAGCGGTCATTTCCTCAATGTAGGGTAGGTTGCCAGGTTGGCATGTTCAGGAGCTGGTTTCATTAGGCATGTTTCCATATAATATATTGCTCATGATTCTGTTTTACAAACAAACTTTGCTCCTACAATAAGTTCCCTTCTCTTAAGGACTTATATTTTTTATACTAGGTATGTGGATGGGGAGCGGTTGACATCTGAGGACGAGAGAATTGTGGTTGACAGGCTTCTAGCTCATCATCCACATGCTGAAGATAAAATTGGATGTGGACTTGAATCAATTATGGTACGCTTTGGTCAGCACTAAATGGTTTAGAGTTCTTAAATTGTTTCAATTATGCAGTTTGCATGCTTTTTTTGTCAGGTCGTATAGAACTAAAAGAAAAAGAAAAGAACGCAGATGACGTTAGGTATATGGATATTTCCAAAAGCTCAAAATACAAGATTTGACCTCTTACCTATACTACAAAGCCCGTACAAGAATTAATCTCTAATAAATTTTAATTCACTCATTAGGCCATATGTGATAGGACCTCAGAACTAACAAGACATTGTCAAGTGCAGTTGCATGGACTTCATGCTTGTGAGCTCCAGGAACCTTGTGAAATGAATTGGACAACTCTAGCCCTTAAAAGAGATTGGGAGGATGGGAACCATGCTGATATAGCCTTGAGATAAGAAAGGGTTACAAAGTTGGGCAAGAAATTTGAGATTCCTCCCCTAACTCTTTCAATTCCAAGCTACATTGAATGTGACGTGAAAGTCAATAACTTCTGCTATTCCAAACTAGTCTTGGTTGGCAATTCCTGCACAGATGGAAAATGAAAAATTTAATAAAATGTTAAAAGGCTGTCCTACCAATTGTTAGCTAAACGTAGCATAAAGATAAAAGGTTGGAATTGTACAATAAGTGCAGGAGACACCATGTAAAATGACGAAGATAAATGGTAGAAATTGGTAGAAGTTTCTGGCTCCACATCTCATCTTTACCAAAATATTTGCCCACTCCCATCCTCCAGCTCCCTTAATAACGGCCCTGTCTTACTAACTTCCTAGCTAATGGCTTAATTGTACCCTAATAACATTTCTAGCACGTCTTCTCAAGTTGCTGCCTGTGTGGTCAAGTAATGGCCTCCAATTGACACCCAACTCTTGTCAATAAGGTTCACATTTCAACTGTACTTGAAGTCAGCAAGCAATTTCGTATGAAGAGCAGCTCATACTATACTAATACTGAAGCTTCTCTGATTAAGACTTTTGATATATGTTATATGATGTTTGCTTATACATTGAAAATCTATGTGGGCTATCATGCTCTTCCGCTTCTGTTTGTACTGAAGAGATATAGCACGGTTATAAAATGGAACTTATCTGCTGGTGTTGCAAAAGTAGCTTACTGGACTCTGTGGCTGTGTTTTTGTGTTGCTCAAATATAATCTTGGACCACATTTGAAATAGGTTGCTACATGAGGACGGCACCTTGCTAAGATAGAGTAACTCTGTGGCTCATGGCCTTGCTTTGACAGCCCTCTCCTACTTTGGCTCTTTTTGTTGGTTGTCTTCGTTCCTTTGGATTCAGGATATTTTTATGTCTGTTGGCCAGGCTCCCCAGTTTAATATATATTCCCTTTCAGTAAAAAAAAAAATAAAAAATAAGAAGTTGAAAATTGCAAGTGACCTAATTTTCTGTTTTCTATGACCACTTCTCATTTTAAGATGTTGTGCACATCACTTTTCATATCAACAAAGCTTACTCATGTCTATTAGAGTTATTTGATGTTTACTTGACTTAAAATCATCGTTTTTTATTTTAAAAAATTATTTAAGCTATTTTCTGCTGTTGAAGGTTGATCGGCACCCCCAATTTCGGCACTCAAGATGCCTCTTTGTTATAAGGACTGATGGTGGATGGATTGACTTCTCCTATCAAAAGTGTCTTCGGGCATATATCAGAAATAAGTACCCATCTTATGCAGAGCGGTTTATTCGAGAACATTTCAAACGCAGTAGTTGATGAACTTGTGCTAGCCTTGATGCTGAAATGTGGATATGTGTTTTGATTAAGAGTAATTTATGAATGATTAGATGAGATCTTCATGGTTCGTTGACCTGCATGAAGGCAAGATGTACAGATTGTCAATGCAGTAGATAACACCTCCTGGACAGGCACTGCACAATTTTTGAAAATGAGGAGAATTGATAATCATTCAAGCAAACCTTCACTTTATTGACTTGTAGCTCTGTTATGTTTGTGGTTAAGGTTAATGGATAATTGGGTCTCCGGAACATTTCTTTTATCCAATCAAACCGGGAATGTAAAACGAGATTATTGATAATGTTAGAAAAGTAATATAGGATTGAAAAGTTAAAACTGATTTTTGAAATCCATTCTCTACACTTGCTACCATGTGCTAGAGTAGATCCAGATCTTGCGCATGTTATAAGGTTCATGATGAACCATCCAAGAGAAGAGAAATAATCAAACCTCAGGCGCATGAGCAGGTTGAAGGGTTGATGATTGCAGCTGTAATGGCAGGAACTGTGATGGGTAAAAGAGATACATTTGTAAGCATATGGGGATGATGTTGGCGGTGGGAAAATGAAGGCATAAAGCAGCCTCGTGGGGTTTGGCCAATGAAGAAGGTTCAAAGGAAAAGGATCGAAGAGTATGATTTAGTTTAATGGTGTCATGTTACGTTAGTGATTGGATTTGGATCTGAGGAAAGCAGGGTGGGTCCCTGTCACAGTCAAGCTGATAATTGGAACAGGTCAAGTCAAAAGAGTCGAGCGGCCTAATGAATCACTGAGCTCTTTGAAGCCTTTCATTTGTCAAAACGGTGGTAAAGCAGCGGTTTGGTGTGGGTATCTCTCTATCTCCCCTCCATGTGCTTGTTTTAGAAGATGGGTAAATTTTTCTGTTTCGTTCCTTTTTTTTTCCAATCCTACAGTCAAAAGCATGCACCGCCATTTCACC

mRNA sequence

CAGCTTCGTGTAGTCACTTCATGCTCAGAACTGAGCTGCTCTCCACATGAAAATTTGATCCTCATGGCTACTTCTTTGCTACTCAGGGGGCATCCTCTCCTCCGGTTAGCGCTCAGGCAGTGCGGGCTATGTACAGGGATCGTGCAGGTGGCTCGCCGGTCTTACTGCACTGCCACGGCGGCGTCTACTCCACCGGACGGCAACTTAACATCTGCTGAAAATACTACCTCAGTGTTGAGTGCCAGTGACCCACCCAAGTACCAAAGGTGGGACGAGCCTGATTATCGAAAGTGGAAGAACCAGGAAGAGGAAATTCTCAGCGACATCGAGCCTATCATATCCCTCACAAAAGAGATCCTCCACTCTAATAGGTTTGTCCGGTTTCCGCAATTTCGCCCCGAAAGTTTATTCTCTATGTTAAAGGCACTATGTCTTTTCGTTTTAGTTGCTGAGAAACTTTCCCTTCTCTTAAGGACTTATATTTTTTATACTAGGTATGTGGATGGGGAGCGGTTGACATCTGAGGACGAGAGAATTGTGGTTGACAGGCTTCTAGCTCATCATCCACATGCTGAAGATAAAATTGGATGTGGACTTGAATCAATTATGGTTGATCGGCACCCCCAATTTCGGCACTCAAGATGCCTCTTTGTTATAAGGACTGATGGTGGATGGATTGACTTCTCCTATCAAAAGTGTCTTCGGGCATATATCAGAAATAAGTACCCATCTTATGCAGAGCGGTTTATTCGAGAACATTTCAAACGCAGTAGTTGA

Coding sequence (CDS)

CAGCTTCGTGTAGTCACTTCATGCTCAGAACTGAGCTGCTCTCCACATGAAAATTTGATCCTCATGGCTACTTCTTTGCTACTCAGGGGGCATCCTCTCCTCCGGTTAGCGCTCAGGCAGTGCGGGCTATGTACAGGGATCGTGCAGGTGGCTCGCCGGTCTTACTGCACTGCCACGGCGGCGTCTACTCCACCGGACGGCAACTTAACATCTGCTGAAAATACTACCTCAGTGTTGAGTGCCAGTGACCCACCCAAGTACCAAAGGTGGGACGAGCCTGATTATCGAAAGTGGAAGAACCAGGAAGAGGAAATTCTCAGCGACATCGAGCCTATCATATCCCTCACAAAAGAGATCCTCCACTCTAATAGGTTTGTCCGGTTTCCGCAATTTCGCCCCGAAAGTTTATTCTCTATGTTAAAGGCACTATGTCTTTTCGTTTTAGTTGCTGAGAAACTTTCCCTTCTCTTAAGGACTTATATTTTTTATACTAGGTATGTGGATGGGGAGCGGTTGACATCTGAGGACGAGAGAATTGTGGTTGACAGGCTTCTAGCTCATCATCCACATGCTGAAGATAAAATTGGATGTGGACTTGAATCAATTATGGTTGATCGGCACCCCCAATTTCGGCACTCAAGATGCCTCTTTGTTATAAGGACTGATGGTGGATGGATTGACTTCTCCTATCAAAAGTGTCTTCGGGCATATATCAGAAATAAGTACCCATCTTATGCAGAGCGGTTTATTCGAGAACATTTCAAACGCAGTAGTTGA

Protein sequence

QLRVVTSCSELSCSPHENLILMATSLLLRGHPLLRLALRQCGLCTGIVQVARRSYCTATAASTPPDGNLTSAENTTSVLSASDPPKYQRWDEPDYRKWKNQEEEILSDIEPIISLTKEILHSNRFVRFPQFRPESLFSMLKALCLFVLVAEKLSLLLRTYIFYTRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPSYAERFIREHFKRSS

Homology

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BLAST of Spg016563 vs. NCBI nr
Match: XP_022135338.1 (protein DCL, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 349.7 bits (896), Expect = 2.1e-92
Identity = 180/237 (75.95%), Postives = 185/237 (78.06%), Query Frame = 0


Query: 22  MATSLLLRGHPLLRLALRQCGLCTGIVQVARRSYCTATAASTPPDGNLTSAENTTSVLSA 81
           MA SLLLRGHPLLRL LR  GLCTGIVQV RRS CTATAA TPPDGNLTSAEN TSVLS+
Sbjct: 1   MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTATAAPTPPDGNLTSAENITSVLSS 60

Query: 82  SDPPKYQRWDEPDYRKWKNQEEEILSDIEPIISLTKEILHSNRFVRFPQFRPESLFSMLK 141
           SDPPKY RWDEPDYRKWK+QEEE+L+DIEPIISLTKEILHSN                  
Sbjct: 61  SDPPKYSRWDEPDYRKWKDQEEEMLNDIEPIISLTKEILHSN------------------ 120

Query: 142 ALCLFVLVAEKLSLLLRTYIFYTRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLES 201
                                  RYVDGERLTS DERIVV+RLLAHHPHAEDKIGCGLES
Sbjct: 121 -----------------------RYVDGERLTSVDERIVVNRLLAHHPHAEDKIGCGLES 180

Query: 202 IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPSYAERFIREHFKRSS 259
           IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPSYAERFIREHFKR S
Sbjct: 181 IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPSYAERFIREHFKRGS 196

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BLAST of Spg016563 vs. NCBI nr
Match: KAG6608449.1 (Protein DCL-like, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 341.7 bits (875), Expect = 5.7e-90
Identity = 175/237 (73.84%), Postives = 181/237 (76.37%), Query Frame = 0


Query: 22  MATSLLLRGHPLLRLALRQCGLCTGIVQVARRSYCTATAASTPPDGNLTSAENTTSVLSA 81
           M  SLLLRGHPL+RL LR  GLCTGIVQV RRS CTA  ASTPP G L+SAENTTSVLSA
Sbjct: 1   MVASLLLRGHPLIRLGLRNRGLCTGIVQVTRRSCCTAMPASTPPGGGLSSAENTTSVLSA 60

Query: 82  SDPPKYQRWDEPDYRKWKNQEEEILSDIEPIISLTKEILHSNRFVRFPQFRPESLFSMLK 141
           +DPPKYQRWDEP YRKWKNQEEEILSDI+P+ISLTKEILHSN                  
Sbjct: 61  TDPPKYQRWDEPGYRKWKNQEEEILSDIDPVISLTKEILHSN------------------ 120

Query: 142 ALCLFVLVAEKLSLLLRTYIFYTRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLES 201
                                  RYVDGERLT EDE+IVVDRLLAHHPHAEDKIGCGLES
Sbjct: 121 -----------------------RYVDGERLTFEDEKIVVDRLLAHHPHAEDKIGCGLES 180

Query: 202 IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPSYAERFIREHFKRSS 259
           IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYP YAERFIREHFKR S
Sbjct: 181 IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPLYAERFIREHFKRGS 196

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BLAST of Spg016563 vs. NCBI nr
Match: KAG7037785.1 (Protein DCL-like, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 339.7 bits (870), Expect = 2.2e-89
Identity = 174/235 (74.04%), Postives = 180/235 (76.60%), Query Frame = 0


Query: 22  MATSLLLRGHPLLRLALRQCGLCTGIVQVARRSYCTATAASTPPDGNLTSAENTTSVLSA 81
           M  SLLLRGHPL+RL LR  GLCTGIVQV RRS CTA  ASTPP G L+SAENTTSVLSA
Sbjct: 1   MVASLLLRGHPLIRLGLRNRGLCTGIVQVTRRSCCTAMPASTPPGGGLSSAENTTSVLSA 60

Query: 82  SDPPKYQRWDEPDYRKWKNQEEEILSDIEPIISLTKEILHSNRFVRFPQFRPESLFSMLK 141
           +DPPKYQRWDEP YRKWKNQEEEILSDI+P+ISLTKEILHSN                  
Sbjct: 61  TDPPKYQRWDEPGYRKWKNQEEEILSDIDPVISLTKEILHSN------------------ 120

Query: 142 ALCLFVLVAEKLSLLLRTYIFYTRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLES 201
                                  RYVDGERLT EDE+IVVDRLLAHHPHAEDKIGCGLES
Sbjct: 121 -----------------------RYVDGERLTFEDEKIVVDRLLAHHPHAEDKIGCGLES 180

Query: 202 IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPSYAERFIREHFKR 257
           IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYP YAERFIREHFKR
Sbjct: 181 IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPLYAERFIREHFKR 194

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BLAST of Spg016563 vs. NCBI nr
Match: XP_022940238.1 (protein DCL homolog, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 338.6 bits (867), Expect = 4.8e-89
Identity = 174/237 (73.42%), Postives = 180/237 (75.95%), Query Frame = 0


Query: 22  MATSLLLRGHPLLRLALRQCGLCTGIVQVARRSYCTATAASTPPDGNLTSAENTTSVLSA 81
           M  SLLLRGHPL+RL LR  GLC GIVQV RRS CTA  ASTPP G L+SAENTTSVLSA
Sbjct: 1   MVASLLLRGHPLIRLGLRNRGLCAGIVQVTRRSCCTAVPASTPPGGGLSSAENTTSVLSA 60

Query: 82  SDPPKYQRWDEPDYRKWKNQEEEILSDIEPIISLTKEILHSNRFVRFPQFRPESLFSMLK 141
           +DPPKYQRW+EP YRKWKNQEEEILSDI+PIISLTKEILHSN                  
Sbjct: 61  TDPPKYQRWNEPGYRKWKNQEEEILSDIDPIISLTKEILHSN------------------ 120

Query: 142 ALCLFVLVAEKLSLLLRTYIFYTRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLES 201
                                  RYVDGERLT EDE+IVVDRLLAHHPHAEDKIGCGLES
Sbjct: 121 -----------------------RYVDGERLTFEDEKIVVDRLLAHHPHAEDKIGCGLES 180

Query: 202 IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPSYAERFIREHFKRSS 259
           IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYP YAERFIREHFKR S
Sbjct: 181 IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPLYAERFIREHFKRGS 196

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BLAST of Spg016563 vs. NCBI nr
Match: XP_022982288.1 (protein DCL homolog, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 338.2 bits (866), Expect = 6.3e-89
Identity = 173/237 (73.00%), Postives = 180/237 (75.95%), Query Frame = 0


Query: 22  MATSLLLRGHPLLRLALRQCGLCTGIVQVARRSYCTATAASTPPDGNLTSAENTTSVLSA 81
           M  SLLLRGHPL+RL LR  GLCTGI+QV RRS CTA  ASTPP G L+SAENTTSVLS 
Sbjct: 1   MVASLLLRGHPLIRLGLRNRGLCTGILQVTRRSCCTAMPASTPPGGGLSSAENTTSVLST 60

Query: 82  SDPPKYQRWDEPDYRKWKNQEEEILSDIEPIISLTKEILHSNRFVRFPQFRPESLFSMLK 141
           +DPPKYQRWDEP YRKWKNQEEEILSDI+PIISLTKEILHSN                  
Sbjct: 61  TDPPKYQRWDEPGYRKWKNQEEEILSDIDPIISLTKEILHSN------------------ 120

Query: 142 ALCLFVLVAEKLSLLLRTYIFYTRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLES 201
                                  RYVDGERLT EDE+IVVDRLLAHHPHAEDKIGCGLES
Sbjct: 121 -----------------------RYVDGERLTFEDEKIVVDRLLAHHPHAEDKIGCGLES 180

Query: 202 IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPSYAERFIREHFKRSS 259
           IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYP YA+RFIREHFKR S
Sbjct: 181 IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPLYADRFIREHFKRGS 196

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BLAST of Spg016563 vs. ExPASy Swiss-Prot
Match: Q9C642 (Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 9.6e-24
Identity = 46/100 (46.00%), Postives = 68/100 (68.00%), Query Frame = 0


Query: 157 LRTYIFYTRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCL 216
           +R  +   +Y + +RL+ E ER +++ LL +HP  E KIGCG++ IMV  HP F  SRC+
Sbjct: 115 VRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCM 174

Query: 217 FVIRTDGGWIDFSYQKCLRAYIRNKYPSYAERFIREHFKR 257
           F++R DG  +DFSY KC++  I+ KYP YA+ FI  HF++
Sbjct: 175 FIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214

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BLAST of Spg016563 vs. ExPASy Swiss-Prot
Match: Q42463 (Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.6e-21
Identity = 73/253 (28.85%), Postives = 114/253 (45.06%), Query Frame = 0


Query: 8   CSELSCSPHENLILMATSLL----LRGHPLLRLALRQCGLCTGIVQVARRSYCTATAAST 67
           C + + SP  + +L++ S L      G  L R A  + G   G ++            ST
Sbjct: 13  CRKNNSSPISHHLLLSPSSLSFSRCGGLRLCRCAAVKTGSEGGGIRSDNAELLRKPVIST 72

Query: 68  PPDGNLTSAENTTSVLSASDPPKYQRWDEPDYRKWKNQEEEILSDIEPIISLTKEILHSN 127
             +   T++E+   V   SD    ++    D   W + E++IL D  P++   + ILHS 
Sbjct: 73  ELE---TTSESEELVKEESDDEVGKK--SGDGEGWVDWEDQILEDTVPLVGFVRMILHSG 132

Query: 128 RFVRFPQFRPESLFSMLKALCLFVLVAEKLSLLLRTYIFYTRYVDGERLTSEDERIVVDR 187
                                                    +Y  G+RL+ + +R ++ R
Sbjct: 133 -----------------------------------------KYAIGDRLSPDHQRTILQR 192

Query: 188 LLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYP 247
           LL +HP  + KIG G++ I V  HP F +SRCLF++R DG  +DFSY KC++  IR  YP
Sbjct: 193 LLPYHPECDKKIGPGVDYITVGYHPDFENSRCLFIVRKDGETVDFSYWKCIKGLIRKNYP 219

Query: 248 SYAERFIREHFKR 257
            YA+ FI  HF++
Sbjct: 253 LYADSFILRHFRK 219

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BLAST of Spg016563 vs. ExPASy Swiss-Prot
Match: Q5D869 (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.4e-19
Identity = 49/157 (31.21%), Postives = 79/157 (50.32%), Query Frame = 0


Query: 100  NQEEEILSDIEPIISLTKEILHSNRFVRFPQFRPESLFSMLKALCLFVLVAEKLSLLLRT 159
            ++E+E+LSD+EP++   ++I+H                                      
Sbjct: 1734 SEEQELLSDVEPVMRTLRKIMHP------------------------------------- 1793

Query: 160  YIFYTRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCLFVI 219
                + Y DG+ ++ +D+  V++++L  HP  E K+G G++ I VD+H  F  SRC FV+
Sbjct: 1794 ----SAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVV 1849

Query: 220  RTDGGWIDFSYQKCLRAYIRNKYPSYAERFIREHFKR 257
             TDG   DFSY+K L  Y+  KYP  AE FI ++F +
Sbjct: 1854 STDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849

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BLAST of Spg016563 vs. ExPASy Swiss-Prot
Match: Q9LQ02 (DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD1 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 3.8e-04
Identity = 28/87 (32.18%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 148  LVAEKLSLLLRTYIFYTRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLESIMVDRH 207
            L+++ L  +L +Y       +   L +E +  +V  +L  HP++ +KIG G++ I V + 
Sbjct: 1341 LLSQSLKRILHSY-------EINELLNERDEGLVKMVLQLHPNSVEKIGPGVKGIRVAK- 1400

Query: 208  PQFRHSRCLFVIRTDGGWIDFSYQKCL 235
             +   S C  V+R DG + DFSY KC+
Sbjct: 1401 SKHGDSCCFEVVRIDGTFEDFSYHKCV 1419

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BLAST of Spg016563 vs. ExPASy TrEMBL
Match: A0A6J1C4J4 (protein DCL, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007322 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 1.0e-92
Identity = 180/237 (75.95%), Postives = 185/237 (78.06%), Query Frame = 0


Query: 22  MATSLLLRGHPLLRLALRQCGLCTGIVQVARRSYCTATAASTPPDGNLTSAENTTSVLSA 81
           MA SLLLRGHPLLRL LR  GLCTGIVQV RRS CTATAA TPPDGNLTSAEN TSVLS+
Sbjct: 1   MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTATAAPTPPDGNLTSAENITSVLSS 60

Query: 82  SDPPKYQRWDEPDYRKWKNQEEEILSDIEPIISLTKEILHSNRFVRFPQFRPESLFSMLK 141
           SDPPKY RWDEPDYRKWK+QEEE+L+DIEPIISLTKEILHSN                  
Sbjct: 61  SDPPKYSRWDEPDYRKWKDQEEEMLNDIEPIISLTKEILHSN------------------ 120

Query: 142 ALCLFVLVAEKLSLLLRTYIFYTRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLES 201
                                  RYVDGERLTS DERIVV+RLLAHHPHAEDKIGCGLES
Sbjct: 121 -----------------------RYVDGERLTSVDERIVVNRLLAHHPHAEDKIGCGLES 180

Query: 202 IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPSYAERFIREHFKRSS 259
           IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPSYAERFIREHFKR S
Sbjct: 181 IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPSYAERFIREHFKRGS 196

[Close]

BLAST of Spg016563 vs. ExPASy TrEMBL
Match: A0A6J1FNQ4 (protein DCL homolog, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111445919 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 2.3e-89
Identity = 174/237 (73.42%), Postives = 180/237 (75.95%), Query Frame = 0


Query: 22  MATSLLLRGHPLLRLALRQCGLCTGIVQVARRSYCTATAASTPPDGNLTSAENTTSVLSA 81
           M  SLLLRGHPL+RL LR  GLC GIVQV RRS CTA  ASTPP G L+SAENTTSVLSA
Sbjct: 1   MVASLLLRGHPLIRLGLRNRGLCAGIVQVTRRSCCTAVPASTPPGGGLSSAENTTSVLSA 60

Query: 82  SDPPKYQRWDEPDYRKWKNQEEEILSDIEPIISLTKEILHSNRFVRFPQFRPESLFSMLK 141
           +DPPKYQRW+EP YRKWKNQEEEILSDI+PIISLTKEILHSN                  
Sbjct: 61  TDPPKYQRWNEPGYRKWKNQEEEILSDIDPIISLTKEILHSN------------------ 120

Query: 142 ALCLFVLVAEKLSLLLRTYIFYTRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLES 201
                                  RYVDGERLT EDE+IVVDRLLAHHPHAEDKIGCGLES
Sbjct: 121 -----------------------RYVDGERLTFEDEKIVVDRLLAHHPHAEDKIGCGLES 180

Query: 202 IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPSYAERFIREHFKRSS 259
           IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYP YAERFIREHFKR S
Sbjct: 181 IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPLYAERFIREHFKRGS 196

[Close]

BLAST of Spg016563 vs. ExPASy TrEMBL
Match: A0A6J1J4G4 (protein DCL homolog, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481165 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 3.0e-89
Identity = 173/237 (73.00%), Postives = 180/237 (75.95%), Query Frame = 0


Query: 22  MATSLLLRGHPLLRLALRQCGLCTGIVQVARRSYCTATAASTPPDGNLTSAENTTSVLSA 81
           M  SLLLRGHPL+RL LR  GLCTGI+QV RRS CTA  ASTPP G L+SAENTTSVLS 
Sbjct: 1   MVASLLLRGHPLIRLGLRNRGLCTGILQVTRRSCCTAMPASTPPGGGLSSAENTTSVLST 60

Query: 82  SDPPKYQRWDEPDYRKWKNQEEEILSDIEPIISLTKEILHSNRFVRFPQFRPESLFSMLK 141
           +DPPKYQRWDEP YRKWKNQEEEILSDI+PIISLTKEILHSN                  
Sbjct: 61  TDPPKYQRWDEPGYRKWKNQEEEILSDIDPIISLTKEILHSN------------------ 120

Query: 142 ALCLFVLVAEKLSLLLRTYIFYTRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLES 201
                                  RYVDGERLT EDE+IVVDRLLAHHPHAEDKIGCGLES
Sbjct: 121 -----------------------RYVDGERLTFEDEKIVVDRLLAHHPHAEDKIGCGLES 180

Query: 202 IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPSYAERFIREHFKRSS 259
           IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYP YA+RFIREHFKR S
Sbjct: 181 IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPLYADRFIREHFKRGS 196

[Close]

BLAST of Spg016563 vs. ExPASy TrEMBL
Match: A0A1S3BU88 (protein DCL, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493574 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 3.1e-86
Identity = 165/237 (69.62%), Postives = 178/237 (75.11%), Query Frame = 0


Query: 22  MATSLLLRGHPLLRLALRQCGLCTGIVQVARRSYCTATAASTPPDGNLTSAENTTSVLSA 81
           MA S L RGHPLLRL L++ GLCTG+VQV RRS C+AT ASTP DG+LT+ +N TS++S+
Sbjct: 1   MAASFLFRGHPLLRLGLKRRGLCTGVVQVTRRSCCSATVASTPSDGDLTAGDNATSLVSS 60

Query: 82  SDPPKYQRWDEPDYRKWKNQEEEILSDIEPIISLTKEILHSNRFVRFPQFRPESLFSMLK 141
           S+PPKYQRWDEPDYRKWKNQEEEIL DIEPII LTKEILHS+                  
Sbjct: 61  SEPPKYQRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSH------------------ 120

Query: 142 ALCLFVLVAEKLSLLLRTYIFYTRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLES 201
                                  RY DGERLT EDER VVDRLLAHHPHAEDKIGCGLES
Sbjct: 121 -----------------------RYADGERLTLEDERTVVDRLLAHHPHAEDKIGCGLES 180

Query: 202 IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPSYAERFIREHFKRSS 259
           IMVDRHPQFRHSRC FVIRTDGGWIDFSYQKCLRAYIRNKYPS+AERFIREHFKR S
Sbjct: 181 IMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKYPSFAERFIREHFKRGS 196

[Close]

BLAST of Spg016563 vs. ExPASy TrEMBL
Match: A0A6J1IHJ1 (protein DCL homolog, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477278 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 7.0e-86
Identity = 168/237 (70.89%), Postives = 179/237 (75.53%), Query Frame = 0


Query: 22  MATSLLLRGHPLLRLALRQCGLCTGIVQVARRSYCTATAASTPPDGNLTSAENTTSVLSA 81
           MA SLLLRGHPLLR  L   GLC+G+VQV RRS CTATAASTPPDG+LTSAENT SV SA
Sbjct: 1   MAASLLLRGHPLLRFGLWHRGLCSGVVQVTRRSCCTATAASTPPDGSLTSAENTASVSSA 60

Query: 82  SDPPKYQRWDEPDYRKWKNQEEEILSDIEPIISLTKEILHSNRFVRFPQFRPESLFSMLK 141
           S   KYQRW EPDYRKWK+QE+EILSD+EP++SLTKEILHSN                  
Sbjct: 61  SQSTKYQRWCEPDYRKWKDQEDEILSDVEPVMSLTKEILHSN------------------ 120

Query: 142 ALCLFVLVAEKLSLLLRTYIFYTRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLES 201
                                  RYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLE 
Sbjct: 121 -----------------------RYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLEF 180

Query: 202 IMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPSYAERFIREHFKRSS 259
           IMVDRHPQFR+SRCLFV+RTDGGWIDFSYQKCLRAYIR+KYPSYAE FIREHFKR S
Sbjct: 181 IMVDRHPQFRYSRCLFVVRTDGGWIDFSYQKCLRAYIRSKYPSYAEMFIREHFKRGS 196

[Close]

BLAST of Spg016563 vs. TAIR 10
Match: AT3G46630.1 (Protein of unknown function (DUF3223) )

HSP 1 Score: 209.5 bits (532), Expect = 3.1e-54
Identity = 122/251 (48.61%), Postives = 152/251 (60.56%), Query Frame = 0


Query: 22  MATSLLLRGHPLLRLAL----RQCGLCT-GIVQVARRSYCTA---------TAASTPPDG 81
           M + LLLR  PLLR        Q G+   GI+   RR  C+            + +P +G
Sbjct: 1   MTSLLLLRTLPLLRNGFLNHRHQVGIVAGGILSHRRRLLCSLADRPQFYENNDSVSPVEG 60

Query: 82  NLTSAENTTSVLSASDPPKYQRWDEPDYRKWKNQEEEILSDIEPIISLTKEILHSNRFVR 141
           +  +A N TS +  +      R+++PDYRKWKN E EIL DIEPI  L KEILHS+    
Sbjct: 61  SGAAAMNVTSPVVDNS----WRYEDPDYRKWKNLEAEILRDIEPISLLAKEILHSD---- 120

Query: 142 FPQFRPESLFSMLKALCLFVLVAEKLSLLLRTYIFYTRYVDGERLTSEDERIVVDRLLAH 201
                                                RY+DGERL  EDE+IV+++LL +
Sbjct: 121 -------------------------------------RYLDGERLDFEDEKIVMEKLLPY 180

Query: 202 HPHAEDKIGCGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPSYAE 259
           HP+++DKIGCGL+ IMVDRHPQFRHSRCLFV+RTDGGWIDFSYQKCLRAY+R+KYPS+AE
Sbjct: 181 HPYSKDKIGCGLDFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYVRDKYPSHAE 206

[Close]

BLAST of Spg016563 vs. TAIR 10
Match: AT1G45230.1 (Protein of unknown function (DUF3223) )

HSP 1 Score: 112.1 bits (279), Expect = 6.8e-25
Identity = 46/100 (46.00%), Postives = 68/100 (68.00%), Query Frame = 0


Query: 157 LRTYIFYTRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCL 216
           +R  +   +Y + +RL+ E ER +++ LL +HP  E KIGCG++ IMV  HP F  SRC+
Sbjct: 115 VRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCM 174

Query: 217 FVIRTDGGWIDFSYQKCLRAYIRNKYPSYAERFIREHFKR 257
           F++R DG  +DFSY KC++  I+ KYP YA+ FI  HF++
Sbjct: 175 FIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214

[Close]

BLAST of Spg016563 vs. TAIR 10
Match: AT1G45230.2 (Protein of unknown function (DUF3223) )

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-24
Identity = 46/100 (46.00%), Postives = 68/100 (68.00%), Query Frame = 0


Query: 157 LRTYIFYTRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCL 216
           +R  +   +Y + +RL+ E ER +++ LL +HP  E KIGCG++ IMV  HP F  SRC+
Sbjct: 115 VRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVWHHPDFESSRCM 174

Query: 217 FVIRTDGGWIDFSYQKCLRAYIRNKYPSYAERFIREHFKR 257
           F++R DG  +DFSY KC++  I+ KYP YA+ FI  HF++
Sbjct: 175 FIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214

[Close]

BLAST of Spg016563 vs. TAIR 10
Match: AT2G40030.1 (nuclear RNA polymerase D1B )

HSP 1 Score: 96.3 bits (238), Expect = 3.9e-20
Identity = 49/157 (31.21%), Postives = 79/157 (50.32%), Query Frame = 0


Query: 100  NQEEEILSDIEPIISLTKEILHSNRFVRFPQFRPESLFSMLKALCLFVLVAEKLSLLLRT 159
            ++E+E+LSD+EP++   ++I+H                                      
Sbjct: 1734 SEEQELLSDVEPVMRTLRKIMHP------------------------------------- 1793

Query: 160  YIFYTRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCLFVI 219
                + Y DG+ ++ +D+  V++++L  HP  E K+G G++ I VD+H  F  SRC FV+
Sbjct: 1794 ----SAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVV 1849

Query: 220  RTDGGWIDFSYQKCLRAYIRNKYPSYAERFIREHFKR 257
             TDG   DFSY+K L  Y+  KYP  AE FI ++F +
Sbjct: 1854 STDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849

[Close]

BLAST of Spg016563 vs. TAIR 10
Match: AT1G63020.1 (nuclear RNA polymerase D1A )

HSP 1 Score: 47.0 bits (110), Expect = 2.7e-05
Identity = 28/87 (32.18%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 148  LVAEKLSLLLRTYIFYTRYVDGERLTSEDERIVVDRLLAHHPHAEDKIGCGLESIMVDRH 207
            L+++ L  +L +Y       +   L +E +  +V  +L  HP++ +KIG G++ I V + 
Sbjct: 1341 LLSQSLKRILHSY-------EINELLNERDEGLVKMVLQLHPNSVEKIGPGVKGIRVAK- 1400

Query: 208  PQFRHSRCLFVIRTDGGWIDFSYQKCL 235
             +   S C  V+R DG + DFSY KC+
Sbjct: 1401 SKHGDSCCFEVVRIDGTFEDFSYHKCV 1419

The following BLAST results are available for this feature:

BLAST of Spg016563 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135338.1	2.1e-92	75.95	protein DCL, chloroplastic isoform X1 [Momordica charantia]	[more]
KAG6608449.1	5.7e-90	73.84	Protein DCL-like, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7037785.1	2.2e-89	74.04	Protein DCL-like, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_022940238.1	4.8e-89	73.42	protein DCL homolog, chloroplastic-like [Cucurbita moschata]	[more]
XP_022982288.1	6.3e-89	73.00	protein DCL homolog, chloroplastic-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Spg016563 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C642	9.6e-24	46.00	Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 S...	[more]
Q42463	7.6e-21	28.85	Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1	[more]
Q5D869	5.4e-19	31.21	DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1...	[more]
Q9LQ02	3.8e-04	32.18	DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD...	[more]

BLAST of Spg016563 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C4J4	1.0e-92	75.95	protein DCL, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A6J1FNQ4	2.3e-89	73.42	protein DCL homolog, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1J4G4	3.0e-89	73.00	protein DCL homolog, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 G...	[more]
A0A1S3BU88	3.1e-86	69.62	protein DCL, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493574 PE=4 SV=1	[more]
A0A6J1IHJ1	7.0e-86	70.89	protein DCL homolog, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477...	[more]

BLAST of Spg016563 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46630.1	3.1e-54	48.61	Protein of unknown function (DUF3223)	[more]
AT1G45230.1	6.8e-25	46.00	Protein of unknown function (DUF3223)	[more]
AT1G45230.2	1.5e-24	46.00	Protein of unknown function (DUF3223)	[more]
AT2G40030.1	3.9e-20	31.21	nuclear RNA polymerase D1B	[more]
AT1G63020.1	2.7e-05	32.18	nuclear RNA polymerase D1A	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF11523	DUF3223	coord: 164..234 e-value: 7.3E-27 score: 93.9
None	No IPR available	GENE3D	3.10.450.40		coord: 151..240 e-value: 4.5E-23 score: 83.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..83
None	No IPR available	PANTHER	PTHR33415:SF4	DCL PROTEIN (DUF3223)	coord: 154..257 coord: 22..126
IPR044673	Protein DCL-like	PANTHER	PTHR33415	FAMILY NOT NAMED	coord: 154..257 coord: 22..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg016563.1	Spg016563.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast