Spg016441 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg016441
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold9: 38515466 .. 38519044 (-)
RNA-Seq ExpressionSpg016441
SyntenySpg016441
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAGCAAAAAGTTCATAATGGCAGCATTGTTGGTGGTGGCCTTGCTGCTGACCCAAGCAGACATTGCCTTAGGAATTAGGTGCCTGTCCAAGAAGGAGATGAAGATGGCTTCAATGGGCGTGGTCGACGCCGACATGCTGCTCGGCGCTCTTCCCAGAGGCCCGACGCCGCCCTCTGCCCCGAGCGATCGGGGCAATCCTGCACCCTTCAGCGGCGGCGATAGGATCTTGGTGTCTGCCCCGAGCCCGGGAGTGGGTCATCGTTGATAGGCTGATTCATGAAGTTTGAGATTATATTATTAGTTGATCATATGGTCTTCTTCTCCAATAAATGATGGTGATTGAATTTCTTTTTCTTGTTCTAATTTGGGTTTGGATTTTTAGGTATGTTTTAATAACCTTAGCTCATTGTTATGTACACACTACACACATGAATATGCAAAGTATACAGTGTTGGTTTATAAATGTGTTATTGCTATGAAATGAAGTGTTGAAATGAAATTTGAATAGAGGTTAACTATTATATTCTTACAAGTGCTTCTCTAATTAGTTATTAGTTGGCTTTCTATATGGGGGACAATAAAGAGTTTTTTGTTTTTGGAATGAGTTTTTTTTTTTTTTTTTTTCTAATATATAGAATGTTCATAATCGTGATATTTAAGTAGACTCTTAATTTTTGTTTATGCTAAAAAATGTAGGCTTTGAAATGAAATTTAGTAGTAAGACGTGTTTATCTTTCTTGAACAATAATGATCGTAGATTGAAAACTTCACCTTAGTATTTATAATGTAATATTAAAAAAAAATACATTTTGAATTATAAAACATAAGATAATGACAAAAACCATCTGGATATATATCGATATTTTATAAATTTGAAAAGTTGTAATAATAGTTATAGAACATGAGATAACCCTTCAAAAAAAAAATAAAAAAGGGTTTTCAACTATTATAATAGTTGAAAACCTGTGATTTGATCAACTAATATTTTTATGGAAAATAATTCCAACTATAATTAAAAAAAAAAGAAACATTTATGTCAAATGTAAAACTATACATACATGACATAAAATAGGTGGAATAATGCCAAGTGGCTTTTCTAATCAGAAATATTCTTCAACACTTTTTTGATGGCAAAGTCTATTAAAAAAGAACGCATTTGACCCAAAAAAAAAAAAGAAAAAAGTCAAATAAGAGATACAAATAGATGTGAAGATGAGAGATTGGACTTTCAACCTCTGAAAAGGTTATACGTGCCGTATGGTCACATTAGTAGGAATACTACTTATCTAGAAGAATATTACAATAAATAAAAAATAATAACGAGGATCTAAAGTTAACATTAATCTTTAATAAATTATGTCAAGAATAAAAAAGGTTAAATTATAAATAAAAATAAGACCCTAAACCGTGGGTTTCGTTTAAAAAATACACCTGAACTAAAAAGTTCCAAAATATCCCCCGACTCTTTAAAATATGTTAAAAAATATCCTTACCGTTAAGTTCTAGGATGATGATGCGTTCTGATGCTCAAAAAAAAAAAAAAAAAAAATCTAGGATGAAAAACATTACGGAGAGAAGTAATAATTTTTTGTTTTTGGTAACCAAAAACCATTTGATAACCATTTCAGTTTTTGGTTTTTGGTTTTTCTGTTTTTGAATTTTTGTTTTTGGTTTTCTATTTTTTAAAAACAAAAACCATATATATTTGATAACTGTTTTTTGTTTTCTGTTTTCAAAAAACAAAAAACCAAACTTGTTTGATAACTGTTTTTGGTTTTCAGTTTTTAAAAAATTAGAGAGGTTAAAAGATGTTTTAGAGAGAGAAAAAATGCGTAGAGACATATAAACAAAAATTTAGAGACACAAATATAAATGTTTTCAAGAGAAAAGTTAAAAATTTAGAGACGTGAAAGAAAATGTTTAGAAAGAGAATATTAGTTAGACTCCATAAAAGATATTAGTTAGAGAAAAAAAAAAAAAGAAAAAAAGTTAGGATAGAAAGATAAATTGAAGATAGAAAAATTAAATAAAAAGAAAATTTTTAGAGAAATGGCAAGGTTAAGAGTAAAAGATCTGCTAAAAAAAATAACGATAAATTAGAAAAATAAAGAAAATGTGTAGAGAGAGCAAATTTTGAGAGATTTTTTTTCCAAAAGAAAATGTAGAATATGCTTATTAGGGAGAGAAGTTATAGATAAATTTTTAGAAATAGATGAGTTATAGAGGGAAAAAAAATTTGAGATAGATTATATTAGAGAGAGAAAAAGAAATTTTGTATAGAGAAAAACGTTTTAGAGAGATAAAAAAAAATATAAAAAGGAATTTAATGGAGAGAGATGGGTAAAAGAGGAAAAAAAGAAAAATGAGTTTTTGAAAAACAGAAATTTGTTTTTAAAAACTACTTTTTTTGGTTTTTGAAATTTAACGTTTTTTTAAAAAAAAAAAAAACAAAAAATAGAAATGGTTATCAAACAACCATGTTTTCTAAAAATGAAAAACAAAAATAGAAAACAGAAAACGAAAGGGTTATCAAACGGCCCCTAAAAGTTTCAATTTCATTAAATATCCCTGATCTTTTAAAAAATTAAAAAAATATATATCCTTACTAAAAATCGTTTCTTTTTTTTTTGCATTAAATTCTGAAAATTCTTCCTCCATACAAATTAATGCAAAAAGAATAAATGATTTTCAGTAAGAGTATTTTTTATTTTTTATTTTTGAATGATCAAGGGTATGAATGAAATTGAAATTTTAATATTTTCCATCCAAAACTTAACCGTTAGGGTATTTTTAACGTTTTTTTAAAGATCATGGATATTTTTGAAACTTTTAAAGTTTAGAGGTATTTTTTAAATGAGACCCATAGTTTTCAAGAGTATTTTTTTATAATTTAGCCAATAAAAAAAATCTCACTTTTTTGCAATATTTGTAAAATATCATAGCTTTTTTTTTTTTTTTTTAGAAGATAAAATATCATAGCTTTAAATTATATTTTCATCCTTCTAATTTTAATCCTCTTTCGGTTTTGTTGATGCCAAAATTCGGACAGGAGACTCACCTGACCCTCACGTGCCACCAACGATAAATTTGTATGAGAGGGGGAGAACGTGACCTGCAAGACAAGCAAACACTGCACACCGGTGTGGTGCTTGCCACACCGACTCCGATGCTTAAGTCAAAAAACTAATGGAAGAGCAAGAGGAGAAGTAGAGAGTTCAGAGAATGAATTTCGGGATCCCTTCTTCAGTGATGAAGATCAGGGGTTTAAATACCTGCTCATACTCCTAGGGTTTTTAGGAATTCAGAGGCGTTTCGGGCTGAACCAGGTGGAATCAGGGCAACCAAGGGCAGAAGGGACCGAATGGAGGCGGAGGAGCTCGGCCCGCGCAAGCGGGCCGAATGGTCAGCCTCGGCCTCAGGCCGAGGCCGACCATATGGGTCGGGCCAAGTCGGCCCGATCCTTTGGTCAGGTCTTCCTCTGGATCGGTTTCCTGGCCCTATCTATGTCCGGTTGTCTGTTCCTTGTGCTTCGGAAACAGGTTTTTTGATCACTATACTTCCATTAGATATTTAA

mRNA sequence

ATGGGCAGCAAAAAGTTCATAATGGCAGCATTGTTGGTGGTGGCCTTGCTGCTGACCCAAGCAGACATTGCCTTAGGAATTAGGTGCCTGTCCAAGAAGGAGATGAAGATGGCTTCAATGGGCGTGGTCGACGCCGACATGCTGCTCGGCGCTCTTCCCAGAGGCCCGACGCCGCCCTCTGCCCCGAGCGATCGGGGCAATCCTGCACCCTTCAGCGGCGGCGATAGGATCTTGGTGTCTGCCCCGAGCCCGGGAGTGGAGGCGTTTCGGGCTGAACCAGGTGGAATCAGGGCAACCAAGGGCAGAAGGGACCGAATGGAGGCGGAGGAGCTCGGCCCGCGCAAGCGGGCCGAATGGTCAGCCTCGGCCTCAGGCCGAGGCCGACCATATGGGTCGGGCCAAGTCGGCCCGATCCTTTGGTCAGGTCTTCCTCTGGATCGGTTTCCTGGCCCTATCTATGTCCGGTTGTCTGTTCCTTGTGCTTCGGAAACAGGTTTTTTGATCACTATACTTCCATTAGATATTTAA

Coding sequence (CDS)

ATGGGCAGCAAAAAGTTCATAATGGCAGCATTGTTGGTGGTGGCCTTGCTGCTGACCCAAGCAGACATTGCCTTAGGAATTAGGTGCCTGTCCAAGAAGGAGATGAAGATGGCTTCAATGGGCGTGGTCGACGCCGACATGCTGCTCGGCGCTCTTCCCAGAGGCCCGACGCCGCCCTCTGCCCCGAGCGATCGGGGCAATCCTGCACCCTTCAGCGGCGGCGATAGGATCTTGGTGTCTGCCCCGAGCCCGGGAGTGGAGGCGTTTCGGGCTGAACCAGGTGGAATCAGGGCAACCAAGGGCAGAAGGGACCGAATGGAGGCGGAGGAGCTCGGCCCGCGCAAGCGGGCCGAATGGTCAGCCTCGGCCTCAGGCCGAGGCCGACCATATGGGTCGGGCCAAGTCGGCCCGATCCTTTGGTCAGGTCTTCCTCTGGATCGGTTTCCTGGCCCTATCTATGTCCGGTTGTCTGTTCCTTGTGCTTCGGAAACAGGTTTTTTGATCACTATACTTCCATTAGATATTTAA

Protein sequence

MGSKKFIMAALLVVALLLTQADIALGIRCLSKKEMKMASMGVVDADMLLGALPRGPTPPSAPSDRGNPAPFSGGDRILVSAPSPGVEAFRAEPGGIRATKGRRDRMEAEELGPRKRAEWSASASGRGRPYGSGQVGPILWSGLPLDRFPGPIYVRLSVPCASETGFLITILPLDI
Homology
[Close]
BLAST of Spg016441 vs. NCBI nr
Match: KGN55050.1 (hypothetical protein Csa_012928 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 8.2e-24
Identity = 65/86 (75.58%), Postives = 74/86 (86.05%), Query Frame = 0 

Query: 1  MGSKKFIMAALLVVALLLTQADIALGIRCLSKKEMKMASMGVVDADMLLGALPRGPTPPS 60
          MGSKK IM ALLVVAL+L+QA ++LGIR LS KEMKM  +GV    MLLGALP+GPTPPS
Sbjct: 2  MGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPPS 61

Query: 61 APSDRGNPAPFSGGDRILVSAPSPGV 87
          APS+RGNPAPFS GDR+LVSAPSPG+
Sbjct: 62 APSERGNPAPFSDGDRVLVSAPSPGI 87

[Close]
BLAST of Spg016441 vs. NCBI nr
Match: KAA0066754.1 (hypothetical protein E6C27_scaffold271G00930 [Cucumis melo var. makuwa] >TYK27901.1 hypothetical protein E5676_scaffold384G00860 [Cucumis melo var. makuwa])

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-23
Identity = 65/86 (75.58%), Postives = 73/86 (84.88%), Query Frame = 0 

Query: 1  MGSKKFIMAALLVVALLLTQADIALGIRCLSKKEMKMASMGVVDADMLLGALPRGPTPPS 60
          MGS+KFIM ALLVVA +L QA ++LGIR LS KEMKM  MGV    MLLGALP+GPTPPS
Sbjct: 2  MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPS 61

Query: 61 APSDRGNPAPFSGGDRILVSAPSPGV 87
          APS+RGNPAPFS GDR+LVSAPSPG+
Sbjct: 62 APSERGNPAPFSDGDRVLVSAPSPGI 87

[Close]
BLAST of Spg016441 vs. NCBI nr
Match: KAG6607932.1 (hypothetical protein SDJN03_01274, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.7 bits (213), Expect = 2.2e-13
Identity = 48/74 (64.86%), Postives = 54/74 (72.97%), Query Frame = 0 

Query: 1  MGSKKFIMAALLVVALLLTQADIALGIRCLSKKEMKMASMGVVDADMLLGALPRGPTPPS 60
          M +KKF MAA L +A LL Q    L IR    K+ K+ SMGVVD DMLLG+LPRGP PPS
Sbjct: 1  MCTKKFTMAACLFLAFLLCQPHTTLAIRSFYHKDTKLPSMGVVDFDMLLGSLPRGPIPPS 60

Query: 61 APSDRGNPAPFSGG 75
          APS+R NPAPFSGG
Sbjct: 61 APSNRENPAPFSGG 74

[Close]
BLAST of Spg016441 vs. ExPASy TrEMBL
Match: A0A0A0KZH3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625050 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.0e-24
Identity = 65/86 (75.58%), Postives = 74/86 (86.05%), Query Frame = 0 

Query: 1  MGSKKFIMAALLVVALLLTQADIALGIRCLSKKEMKMASMGVVDADMLLGALPRGPTPPS 60
          MGSKK IM ALLVVAL+L+QA ++LGIR LS KEMKM  +GV    MLLGALP+GPTPPS
Sbjct: 2  MGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPPS 61

Query: 61 APSDRGNPAPFSGGDRILVSAPSPGV 87
          APS+RGNPAPFS GDR+LVSAPSPG+
Sbjct: 62 APSERGNPAPFSDGDRVLVSAPSPGI 87

[Close]
BLAST of Spg016441 vs. ExPASy TrEMBL
Match: A0A5A7VHE0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00860 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 5.2e-24
Identity = 65/86 (75.58%), Postives = 73/86 (84.88%), Query Frame = 0 

Query: 1  MGSKKFIMAALLVVALLLTQADIALGIRCLSKKEMKMASMGVVDADMLLGALPRGPTPPS 60
          MGS+KFIM ALLVVA +L QA ++LGIR LS KEMKM  MGV    MLLGALP+GPTPPS
Sbjct: 2  MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPS 61

Query: 61 APSDRGNPAPFSGGDRILVSAPSPGV 87
          APS+RGNPAPFS GDR+LVSAPSPG+
Sbjct: 62 APSERGNPAPFSDGDRVLVSAPSPGI 87

The following BLAST results are available for this feature:
BLAST of Spg016441 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55050.18.2e-2475.58hypothetical protein Csa_012928 [Cucumis sativus][more]
KAA0066754.11.1e-2375.58hypothetical protein E6C27_scaffold271G00930 [Cucumis melo var. makuwa] >TYK2790... [more]
KAG6607932.12.2e-1364.86hypothetical protein SDJN03_01274, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Spg016441 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg016441 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZH34.0e-2475.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625050 PE=4 SV=1[more]
A0A5A7VHE05.2e-2475.58Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Spg016441 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg016441.1Spg016441.1mRNA