Spg016410 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg016410
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold9: 37281805 .. 37284026 (+)
RNA-Seq ExpressionSpg016410
SyntenySpg016410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAAACGATGTCGTTTCCATGGCAAGCAATGGCGTTCCGCGTTCGTTTTAGAGCTTTGCAATAGCCGAACCCGGAGATTCTGCCCTGCTGCTGTGGGTGCTCGAGGTTCTGCAATAACGAACCCGGTGAGTTCTTCAGACTTTTTCCCCTCTGATTTTCTTTAGGTTAATCGATAGTTTTCTGTTTGTTTGCCGAGAAAGAGATCGGAATTTATCTTTCTCCAGGCAGAAGAACTTCGTGAATGTTGATTCTTAACCGATATGAATCGAGTGTAATTTGGAATCGTTTACTCTCTGTTGTGTTTTCCGGCTACTTTCATTTTTGTTGTTCTTTTCCTTTAGACCAAACGGTGGAGGAATCTGGAATTGTTTGCATCTCTGAAGCCTTGTTTATCGTAATTCTCAGGCAGTAGTAGGACAGATTTGTCAGTGATTGAACAAACGATGGAATTGACTGAATATAGGGTTTTCTGCTTCATGTAACTGATATCATTTTTTAATTTGGTTTTTCTGTTCATGTGACGGTTCAGTTCTTTAAATTTTTCACTAGATATCTGATTGGGAAACGGTTTGAAAATGAAATATGAGTAACTGAATGAAACTGAGAAACCTCCTGTAATCAATCTTGAGGATGATTATATATATATCCATTTGTATTTATTGATTACACCAAAACTTTTAGTGCCAAGGCGTCAACCGTTTATTGTTTAAAGTACAAGAACTAAATCATTACAAAAAGGATGATAAAAGAACGGAAGTTCAACAGCTAAGAATGAGCATTTGTAAGATGGTACGAACTTTTCAATTAGACAGTAGCTGTAGTACTTGTAAGGTTTCCATTATTAGAGATTCAGTGTTTGCTTATCTAGCTATTGAAATTAAACAGGGTTATGACTTGAGTTCCATTTTGGATTTTTTTTTTCTTCTGGTTATGACTTTATCCTATGCTGCATTTTTTAGTTCTATAAAACACACTTGTATTGTAGGTTGTAATATTTATATTGAACTATCTTCATATGTTTTGATGGGTAGGTTTACCGCGAAGGCCATATCTAGCTTACCTGGTTCATCAACAGATAATGGAAGGTAAAGTCAGTGTCCCGCCTAAAAACAATTGGAAACAGATGGGACATGAGGAGGCGACAGTGGCTGTTAATGAAGAAATGAAAAAAGTTCAACGGCTTCCTTCTAACAGTACCTATGCTACTCATCGGTTGCGGGTTTTAAACAAAGTTCTGCAGCTTTTATCAATTCAGGTGTGTATCATGAAACTGCAGCAATCATATGATCAGTTCATGTTCATAATGTTGTTTGTTATAAGAATATATTTGCACTCTATTACTTGCTTCTGCAGTCTGTGCTACATCGAAAGTTCAAACTAGTATCTGCTATAGCCATCTTGTTTGCATCTCTTTCTGTGTTTCAAAAAGGAAATTTTGTTCCTTTTTGAAAGTATTACAGTTAAACTTAAGCCGTTTCTATTTCTGTGTTTCAAGAGGCAATTTGATATCTTCAATAGGATTTCGTTTCTAATGGTGTGATTGCTTTCTTCACAGTTTATTTATTTATTCATTTGTTCATGTATATGAGTCTTTAGGTTTCATGTTCTTTTTAAAGCTTGTTCTTGTATGAATGCTTTGCAATTCTCTTATAATAACCATTGGCTAATTTGCTAATTAGTAGCACATCTTTTCATCTTCAGTTTTCCTCTTAATGAGGAATCGGTATTGGCATTGATGATTCTTTTGCTATGCAATTGTTAGACTTTTAGCCTCTGTTTTCCTATTTTCTTATTGGTAACTGTATATCTAATATTATTTCATATAAAGCTTCTAATTCAATTTCACAATTTTCTCTCGATCCATTTCCTGTCCATTTAGTGTAGAATGACATCACCAAATAGATCTTAGTGGATATTTGGAATGACTTTTTAAGTGTTTAAAAACACTTTTTTTTACACTTAAAAGCATTTTTGATCCTTAGTTTTGTTCCAAAAGAGCATATACTCCCTAACTTAACTCGTACTGTTCTGCAGTTGTTGAGTTTTAAACTTCTCGCAGTTGCATAAATTACATGCAGAATTACAAGTAATGCGATATTTCATCATTTGAACATCGGTTTTTGATATCTTTTGCGTTTGTTCTCTCATCATCTTTTGTCAGAGAACTGCATCTCAGGAAGAGGAACTGGAGTTGCTGTTCGCTGGGCTCTCTCTGTGA

mRNA sequence

ATGAGAAAACGATGTCGTTTCCATGGCAAGCAATGGCGTTCCGCGTTCGTTTTAGAGCTTTGCAATAGCCGAACCCGGAGATTCTGCCCTGCTGCTGTGGGTGCTCGAGGTTCTGCAATAACGAACCCGGCAGTAGTAGGACAGATTTGTTTACCGCGAAGGCCATATCTAGCTTACCTGGTTCATCAACAGATAATGGAAGGTAAAGTCAGTGTCCCGCCTAAAAACAATTGGAAACAGATGGGACATGAGGAGGCGACAGTGGCTGTTAATGAAGAAATGAAAAAAGTTCAACGGCTTCCTTCTAACAGTACCTATGCTACTCATCGGTTGCGGGTTTTAAACAAAGTTCTGCAGCTTTTATCAATTCAGAGAACTGCATCTCAGGAAGAGGAACTGGAGTTGCTGTTCGCTGGGCTCTCTCTGTGA

Coding sequence (CDS)

ATGAGAAAACGATGTCGTTTCCATGGCAAGCAATGGCGTTCCGCGTTCGTTTTAGAGCTTTGCAATAGCCGAACCCGGAGATTCTGCCCTGCTGCTGTGGGTGCTCGAGGTTCTGCAATAACGAACCCGGCAGTAGTAGGACAGATTTGTTTACCGCGAAGGCCATATCTAGCTTACCTGGTTCATCAACAGATAATGGAAGGTAAAGTCAGTGTCCCGCCTAAAAACAATTGGAAACAGATGGGACATGAGGAGGCGACAGTGGCTGTTAATGAAGAAATGAAAAAAGTTCAACGGCTTCCTTCTAACAGTACCTATGCTACTCATCGGTTGCGGGTTTTAAACAAAGTTCTGCAGCTTTTATCAATTCAGAGAACTGCATCTCAGGAAGAGGAACTGGAGTTGCTGTTCGCTGGGCTCTCTCTGTGA

Protein sequence

MRKRCRFHGKQWRSAFVLELCNSRTRRFCPAAVGARGSAITNPAVVGQICLPRRPYLAYLVHQQIMEGKVSVPPKNNWKQMGHEEATVAVNEEMKKVQRLPSNSTYATHRLRVLNKVLQLLSIQRTASQEEELELLFAGLSL
Homology
[Close]
BLAST of Spg016410 vs. NCBI nr
Match: KAG6591989.1 (hypothetical protein SDJN03_14335, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-27
Identity = 69/84 (82.14%), Postives = 76/84 (90.48%), Query Frame = 0 

Query: 59  YLVHQQIMEGKVSVPPKNNWKQMGHEEATVAVNEEMKKVQRLPSNSTYATHRLRVLNKVL 118
           YL H+ IME KVSV PKN+ KQMGH+EA V V EEMK+VQ+LPSNSTYATHR+RVLNK+L
Sbjct: 10  YLAHRPIMESKVSVLPKNDGKQMGHQEAKVVVQEEMKRVQQLPSNSTYATHRMRVLNKIL 69

Query: 119 QLLSIQRTASQEEELELLFAGLSL 143
           QLLSIQRTASQEEELELLFAGLSL
Sbjct: 70  QLLSIQRTASQEEELELLFAGLSL 93

[Close]
BLAST of Spg016410 vs. NCBI nr
Match: XP_022139403.1 (uncharacterized protein LOC111010342 [Momordica charantia] >XP_022139404.1 uncharacterized protein LOC111010342 [Momordica charantia])

HSP 1 Score: 132.1 bits (331), Expect = 3.8e-27
Identity = 66/77 (85.71%), Postives = 71/77 (92.21%), Query Frame = 0 

Query: 66  MEGKVSVPPKNNWKQMGHEEATVAVNEEMKKVQRLPSNSTYATHRLRVLNKVLQLLSIQR 125
           ME KVS PPKNNWKQMGHEE TV V++EMK+VQ+LPSNS YATHR RVLNK+LQLLSIQR
Sbjct: 1   MESKVSAPPKNNWKQMGHEETTVTVHQEMKRVQQLPSNSAYATHRFRVLNKILQLLSIQR 60

Query: 126 TASQEEELELLFAGLSL 143
           TASQEEELELLFAGLSL
Sbjct: 61  TASQEEELELLFAGLSL 77

[Close]
BLAST of Spg016410 vs. NCBI nr
Match: KAA0036794.1 (uncharacterized protein E6C27_scaffold20G00830 [Cucumis melo var. makuwa] >TYJ95861.1 uncharacterized protein E5676_scaffold110G001550 [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 4.9e-27
Identity = 66/77 (85.71%), Postives = 73/77 (94.81%), Query Frame = 0 

Query: 66  MEGKVSVPPKNNWKQMGHEEATVAVNEEMKKVQRLPSNSTYATHRLRVLNKVLQLLSIQR 125
           ME KV+VPPK +WKQMGHEEATVAV+EEMK+VQ+ PSNSTYATHRLRVLNK+LQLLSIQR
Sbjct: 1   MEDKVTVPPKRDWKQMGHEEATVAVHEEMKRVQKFPSNSTYATHRLRVLNKILQLLSIQR 60

Query: 126 TASQEEELELLFAGLSL 143
           T SQEEELELLF+GLSL
Sbjct: 61  TVSQEEELELLFSGLSL 77

[Close]
BLAST of Spg016410 vs. NCBI nr
Match: XP_022935764.1 (uncharacterized protein LOC111442587 [Cucurbita moschata] >XP_022976616.1 uncharacterized protein LOC111476958 [Cucurbita maxima])

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-26
Identity = 68/77 (88.31%), Postives = 72/77 (93.51%), Query Frame = 0 

Query: 66  MEGKVSVPPKNNWKQMGHEEATVAVNEEMKKVQRLPSNSTYATHRLRVLNKVLQLLSIQR 125
           MEGKVSV PKNN KQMGH+EA V V EEMK+VQ+LPSNSTYATHRLRVLNK+LQLLSIQR
Sbjct: 1   MEGKVSVSPKNNGKQMGHQEAKVVVQEEMKRVQQLPSNSTYATHRLRVLNKILQLLSIQR 60

Query: 126 TASQEEELELLFAGLSL 143
           TASQEEELELLFAGLSL
Sbjct: 61  TASQEEELELLFAGLSL 77

[Close]
BLAST of Spg016410 vs. NCBI nr
Match: XP_023535148.1 (uncharacterized protein LOC111796661 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-25
Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = 0 

Query: 66  MEGKVSVPPKNNWKQMGHEEATVAVNEEMKKVQRLPSNSTYATHRLRVLNKVLQLLSIQR 125
           MEGKVSV PKN+ KQMGH+EA V V EEMK+VQ+LPSNSTYATHR+RVLNK+LQLLSIQR
Sbjct: 1   MEGKVSVLPKNDGKQMGHQEAKVVVQEEMKRVQQLPSNSTYATHRMRVLNKILQLLSIQR 60

Query: 126 TASQEEELELLFAGLSL 143
           TASQEEELELLFAGLSL
Sbjct: 61  TASQEEELELLFAGLSL 77

[Close]
BLAST of Spg016410 vs. ExPASy TrEMBL
Match: A0A6J1CCW1 (uncharacterized protein LOC111010342 OS=Momordica charantia OX=3673 GN=LOC111010342 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-27
Identity = 66/77 (85.71%), Postives = 71/77 (92.21%), Query Frame = 0 

Query: 66  MEGKVSVPPKNNWKQMGHEEATVAVNEEMKKVQRLPSNSTYATHRLRVLNKVLQLLSIQR 125
           ME KVS PPKNNWKQMGHEE TV V++EMK+VQ+LPSNS YATHR RVLNK+LQLLSIQR
Sbjct: 1   MESKVSAPPKNNWKQMGHEETTVTVHQEMKRVQQLPSNSAYATHRFRVLNKILQLLSIQR 60

Query: 126 TASQEEELELLFAGLSL 143
           TASQEEELELLFAGLSL
Sbjct: 61  TASQEEELELLFAGLSL 77

[Close]
BLAST of Spg016410 vs. ExPASy TrEMBL
Match: A0A5A7SZV0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001550 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.4e-27
Identity = 66/77 (85.71%), Postives = 73/77 (94.81%), Query Frame = 0 

Query: 66  MEGKVSVPPKNNWKQMGHEEATVAVNEEMKKVQRLPSNSTYATHRLRVLNKVLQLLSIQR 125
           ME KV+VPPK +WKQMGHEEATVAV+EEMK+VQ+ PSNSTYATHRLRVLNK+LQLLSIQR
Sbjct: 1   MEDKVTVPPKRDWKQMGHEEATVAVHEEMKRVQKFPSNSTYATHRLRVLNKILQLLSIQR 60

Query: 126 TASQEEELELLFAGLSL 143
           T SQEEELELLF+GLSL
Sbjct: 61  TVSQEEELELLFSGLSL 77

[Close]
BLAST of Spg016410 vs. ExPASy TrEMBL
Match: A0A6J1IHD5 (uncharacterized protein LOC111476958 OS=Cucurbita maxima OX=3661 GN=LOC111476958 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 6.9e-27
Identity = 68/77 (88.31%), Postives = 72/77 (93.51%), Query Frame = 0 

Query: 66  MEGKVSVPPKNNWKQMGHEEATVAVNEEMKKVQRLPSNSTYATHRLRVLNKVLQLLSIQR 125
           MEGKVSV PKNN KQMGH+EA V V EEMK+VQ+LPSNSTYATHRLRVLNK+LQLLSIQR
Sbjct: 1   MEGKVSVSPKNNGKQMGHQEAKVVVQEEMKRVQQLPSNSTYATHRLRVLNKILQLLSIQR 60

Query: 126 TASQEEELELLFAGLSL 143
           TASQEEELELLFAGLSL
Sbjct: 61  TASQEEELELLFAGLSL 77

[Close]
BLAST of Spg016410 vs. ExPASy TrEMBL
Match: A0A6J1F6C2 (uncharacterized protein LOC111442587 OS=Cucurbita moschata OX=3662 GN=LOC111442587 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 6.9e-27
Identity = 68/77 (88.31%), Postives = 72/77 (93.51%), Query Frame = 0 

Query: 66  MEGKVSVPPKNNWKQMGHEEATVAVNEEMKKVQRLPSNSTYATHRLRVLNKVLQLLSIQR 125
           MEGKVSV PKNN KQMGH+EA V V EEMK+VQ+LPSNSTYATHRLRVLNK+LQLLSIQR
Sbjct: 1   MEGKVSVSPKNNGKQMGHQEAKVVVQEEMKRVQQLPSNSTYATHRLRVLNKILQLLSIQR 60

Query: 126 TASQEEELELLFAGLSL 143
           TASQEEELELLFAGLSL
Sbjct: 61  TASQEEELELLFAGLSL 77

[Close]
BLAST of Spg016410 vs. ExPASy TrEMBL
Match: A0A0A0LFX0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851790 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.9e-25
Identity = 63/77 (81.82%), Postives = 71/77 (92.21%), Query Frame = 0 

Query: 66  MEGKVSVPPKNNWKQMGHEEATVAVNEEMKKVQRLPSNSTYATHRLRVLNKVLQLLSIQR 125
           ME KV+VP K +WKQMGHE ATVAV+EEMK+VQ+ PSNSTYATHRLR+LNK+LQLLSIQR
Sbjct: 1   MEDKVNVPTKRDWKQMGHEGATVAVHEEMKRVQQFPSNSTYATHRLRILNKILQLLSIQR 60

Query: 126 TASQEEELELLFAGLSL 143
           T SQEEELELLF+GLSL
Sbjct: 61  TLSQEEELELLFSGLSL 77

[Close]
BLAST of Spg016410 vs. TAIR 10
Match: AT3G13677.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-14
Identity = 39/65 (60.00%), Postives = 50/65 (76.92%), Query Frame = 0 

Query: 78  WKQMGHEEATVAVNEEMKKVQRLPSNSTYATHRLRVLNKVLQLLSIQRTASQEEELELLF 137
           W +M  +E +  + EE+K+V +LPSNS YA HRL+VLNK+  LLS+QRT SQE+ELELLF
Sbjct: 12  WNEMDCDEKSSVIQEEIKRVCKLPSNSVYAVHRLKVLNKINDLLSVQRTLSQEKELELLF 71

Query: 138 AGLSL 143
             LSL
Sbjct: 72  TQLSL 76

[Close]
BLAST of Spg016410 vs. TAIR 10
Match: AT3G13677.1 (unknown protein; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 6.4e-09
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 0 

Query: 78  WKQMGHEEATVAVNEEMKKVQRLPSNSTYATHRLRVLNKVLQLLSIQRTASQE 131
           W +M  +E +  + EE+K+V +LPSNS YA HRL+VLNK+  LLS+Q   S+E
Sbjct: 12  WNEMDCDEKSSVIQEEIKRVCKLPSNSVYAVHRLKVLNKINDLLSVQNIVSRE 64

The following BLAST results are available for this feature:
BLAST of Spg016410 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6591989.11.7e-2782.14hypothetical protein SDJN03_14335, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022139403.13.8e-2785.71uncharacterized protein LOC111010342 [Momordica charantia] >XP_022139404.1 uncha... [more]
KAA0036794.14.9e-2785.71uncharacterized protein E6C27_scaffold20G00830 [Cucumis melo var. makuwa] >TYJ95... [more]
XP_022935764.11.4e-2688.31uncharacterized protein LOC111442587 [Cucurbita moschata] >XP_022976616.1 unchar... [more]
XP_023535148.11.6e-2585.71uncharacterized protein LOC111796661 [Cucurbita pepo subsp. pepo][more]
BLAST of Spg016410 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg016410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CCW11.8e-2785.71uncharacterized protein LOC111010342 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
A0A5A7SZV02.4e-2785.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1IHD56.9e-2788.31uncharacterized protein LOC111476958 OS=Cucurbita maxima OX=3661 GN=LOC111476958... [more]
A0A6J1F6C26.9e-2788.31uncharacterized protein LOC111442587 OS=Cucurbita moschata OX=3662 GN=LOC1114425... [more]
A0A0A0LFX02.9e-2581.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851790 PE=4 SV=1[more]
BLAST of Spg016410 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G13677.21.3e-1460.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G13677.16.4e-0950.94unknown protein; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bac... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg016410.1Spg016410.1mRNA