Spg016406 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg016406
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTransmembrane protein
Locationscaffold9: 45405717 .. 45406004 (-)
RNA-Seq ExpressionSpg016406
SyntenySpg016406
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATGGGATTGAGCGCCGCAGCATCAGCGAAACGTCTCTGTTTTGTTGTGGGTGTTCTGTTAATGGTGGCTTCGACGCATTTTCTAGCAGTTGAGGGCAGAGTTTTAAAATCAGTTGCAGAGAAGTTAGCAGTTGGGGAGGAGAAAATTGAAGCTTTGAAGCCAATTGGAGTGGCAGCTTATATGGAAAAAGTTAATTCGTTAAGTAGCAGTAGTCGCAGTGCATTTAGAAGCTTGAGTTTCGTGTTGGCTTCTGGGCCTAGTAAAAAAGGTCCCGGGCATTGA

mRNA sequence

ATGGCAATGGGATTGAGCGCCGCAGCATCAGCGAAACGTCTCTGTTTTGTTGTGGGTGTTCTGTTAATGGTGGCTTCGACGCATTTTCTAGCAGTTGAGGGCAGAGTTTTAAAATCAGTTGCAGAGAAGTTAGCAGTTGGGGAGGAGAAAATTGAAGCTTTGAAGCCAATTGGAGTGGCAGCTTATATGGAAAAAGTTAATTCGTTAAGTAGCAGTAGTCGCAGTGCATTTAGAAGCTTGAGTTTCGTGTTGGCTTCTGGGCCTAGTAAAAAAGGTCCCGGGCATTGA

Coding sequence (CDS)

ATGGCAATGGGATTGAGCGCCGCAGCATCAGCGAAACGTCTCTGTTTTGTTGTGGGTGTTCTGTTAATGGTGGCTTCGACGCATTTTCTAGCAGTTGAGGGCAGAGTTTTAAAATCAGTTGCAGAGAAGTTAGCAGTTGGGGAGGAGAAAATTGAAGCTTTGAAGCCAATTGGAGTGGCAGCTTATATGGAAAAAGTTAATTCGTTAAGTAGCAGTAGTCGCAGTGCATTTAGAAGCTTGAGTTTCGTGTTGGCTTCTGGGCCTAGTAAAAAAGGTCCCGGGCATTGA

Protein sequence

MAMGLSAAASAKRLCFVVGVLLMVASTHFLAVEGRVLKSVAEKLAVGEEKIEALKPIGVAAYMEKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH
Homology
BLAST of Spg016406 vs. NCBI nr
Match: KAG6591405.1 (hypothetical protein SDJN03_13751, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.2 bits (326), Expect = 9.6e-27
Identity = 72/95 (75.79%), Postives = 82/95 (86.32%), Query Frame = 0

Query: 1  MAMGLSAAASAKRLCFVVGVLLMVASTHFLAVEGRVLKSVAEKLAVGEEKIEALKPIGVA 60
          MAM +SA AS KRLCFVVGVLLMVAS HFL VEGR L+SV+EKLA G+EK+  ++ IGVA
Sbjct: 1  MAMEMSATASGKRLCFVVGVLLMVASAHFLTVEGRTLRSVSEKLADGKEKMGGVEAIGVA 60

Query: 61 AYMEKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH 96
          A+ ++VNSLSSSS S FRSLSFVLASGPSKKGPGH
Sbjct: 61 AFRDQVNSLSSSSHSEFRSLSFVLASGPSKKGPGH 95

BLAST of Spg016406 vs. NCBI nr
Match: KGN55240.1 (hypothetical protein Csa_012906 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 3.9e-20
Identity = 65/95 (68.42%), Postives = 76/95 (80.00%), Query Frame = 0

Query: 1  MAMGLSAAASAKRLCFVVGVLLMVASTHFLAVEGRVLKSVAEKLAVGEEKIEALKPIGVA 60
          MAM L    S K +CFVVGVLLM+ASTHFL VEGRVL+S  EKLA  +E++E +KPI   
Sbjct: 1  MAMKL----STKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPI--- 60

Query: 61 AYMEKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH 96
            +++ NSLSSSSRS+FRSLSFVLASGPSKKGPGH
Sbjct: 61 VLVDEANSLSSSSRSSFRSLSFVLASGPSKKGPGH 88

BLAST of Spg016406 vs. NCBI nr
Match: KAG6608443.1 (hypothetical protein SDJN03_01785, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103.6 bits (257), Expect = 9.6e-19
Identity = 61/95 (64.21%), Postives = 71/95 (74.74%), Query Frame = 0

Query: 1  MAMGLSAAASAKRLCFVVGVLLMVASTHFLAVEGRVLKSVAEKLAVGEEKIEALKPIGVA 60
          MAM L   AS +RLCFVVGVLLMV  T F++VEGRVLK VA++  V        +PIG+ 
Sbjct: 1  MAMELRGTASGRRLCFVVGVLLMVVWTQFVSVEGRVLKGVADEAVV--------EPIGMV 60

Query: 61 AYMEKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH 96
          AYM  ++SLS SSRSAF SLSFVL+SGPSKKGPGH
Sbjct: 61 AYMATLDSLSGSSRSAFSSLSFVLSSGPSKKGPGH 87

BLAST of Spg016406 vs. NCBI nr
Match: KAA0064422.1 (hypothetical protein E6C27_scaffold255G001300 [Cucumis melo var. makuwa] >TYK20165.1 hypothetical protein E5676_scaffold134G002970 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 5.8e-16
Identity = 52/73 (71.23%), Postives = 61/73 (83.56%), Query Frame = 0

Query: 23 MVASTHFLAVEGRVLKSVAEKLAVGEEKIEALKPIGVAAYMEKVNSLSSSSRSAFRSLSF 82
          M+ASTHFL VEGRVL+S  EKLA  +EK+E +KP+     M++ NSLSSSSRS+FRSLSF
Sbjct: 1  MMASTHFLIVEGRVLRSEEEKLAAMKEKMEGVKPV----VMDEANSLSSSSRSSFRSLSF 60

Query: 83 VLASGPSKKGPGH 96
          VLASGPSKKGPGH
Sbjct: 61 VLASGPSKKGPGH 69

BLAST of Spg016406 vs. NCBI nr
Match: XP_034677217.1 (uncharacterized protein LOC117907698 [Vitis riparia])

HSP 1 Score: 60.8 bits (146), Expect = 7.1e-06
Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 0

Query: 6  SAAASAKRLCFVVGVLLMVASTHFLAVEGRVLKSVAEKLAVGEEKIEALKPIGVAAYMEK 65
          SA  S K L FV+ VL++V ST    V  R L+S  +  A     I+  + +GV A    
Sbjct: 7  SATRSVKSLWFVLAVLVLVVSTQSSFVHCRALRSTVDVAAAAAAAIQGDESVGV-ANSSA 66

Query: 66 VNSLSSSSRSAFRSLSFVLASGPSKKGPGH 96
          V+S +SS RS+ RSL++ LASGPSK+GPGH
Sbjct: 67 VSSNNSSKRSSVRSLTYKLASGPSKRGPGH 95

BLAST of Spg016406 vs. ExPASy TrEMBL
Match: A0A0A0KZV6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641720 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.9e-20
Identity = 65/95 (68.42%), Postives = 76/95 (80.00%), Query Frame = 0

Query: 1  MAMGLSAAASAKRLCFVVGVLLMVASTHFLAVEGRVLKSVAEKLAVGEEKIEALKPIGVA 60
          MAM L    S K +CFVVGVLLM+ASTHFL VEGRVL+S  EKLA  +E++E +KPI   
Sbjct: 1  MAMKL----STKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPI--- 60

Query: 61 AYMEKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH 96
            +++ NSLSSSSRS+FRSLSFVLASGPSKKGPGH
Sbjct: 61 VLVDEANSLSSSSRSSFRSLSFVLASGPSKKGPGH 88

BLAST of Spg016406 vs. ExPASy TrEMBL
Match: A0A5D3D9C4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002970 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.8e-16
Identity = 52/73 (71.23%), Postives = 61/73 (83.56%), Query Frame = 0

Query: 23 MVASTHFLAVEGRVLKSVAEKLAVGEEKIEALKPIGVAAYMEKVNSLSSSSRSAFRSLSF 82
          M+ASTHFL VEGRVL+S  EKLA  +EK+E +KP+     M++ NSLSSSSRS+FRSLSF
Sbjct: 1  MMASTHFLIVEGRVLRSEEEKLAAMKEKMEGVKPV----VMDEANSLSSSSRSSFRSLSF 60

Query: 83 VLASGPSKKGPGH 96
          VLASGPSKKGPGH
Sbjct: 61 VLASGPSKKGPGH 69

BLAST of Spg016406 vs. ExPASy TrEMBL
Match: A0A5B7BBR4 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_035355 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.2e-08
Identity = 43/88 (48.86%), Postives = 53/88 (60.23%), Query Frame = 0

Query: 8   AASAKRLCFVVGVLLMVASTHFLAVEGRVLKSVAEKLAVGEEKIEALKPIGVAAYMEKVN 67
           A S K LCFV+GV+++V  T F  V  R L+S  E    G E+    + +  A      +
Sbjct: 29  ATSMKSLCFVLGVMILVMGTQFSVVHCRALRSTEETTIAGCERANGAEMVPFAV----SS 88

Query: 68  SLSSSSRSAFRSLSFVLASGPSKKGPGH 96
           + SSSSRSA RSL F LASGPSKKGPGH
Sbjct: 89  NNSSSSRSAVRSLVFKLASGPSKKGPGH 112

BLAST of Spg016406 vs. ExPASy TrEMBL
Match: A0A061FFY1 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_034774 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.5e-06
Identity = 40/89 (44.94%), Postives = 57/89 (64.04%), Query Frame = 0

Query: 9  ASAKRLCFVVGVLLMVASTHFLAVEGRVLKSVAEKLAVG--EEKIEALKPIGVAAYMEKV 68
          +S KR  FV+G+L ++ ST F AV+GR L+S    + V   EE+  A + + V+ +    
Sbjct: 10 SSMKRHLFVLGLLALLVSTEFTAVDGRALRSKTNNVVVAGCEEQGGADEQVAVSTFAVSA 69

Query: 69 NSLSSSSRSAFRSLSFVLASGPSKKGPGH 96
          N  +SSSR + RSL+  LASGPSK+GPGH
Sbjct: 70 N--NSSSRPSVRSLASRLASGPSKRGPGH 96

BLAST of Spg016406 vs. ExPASy TrEMBL
Match: A0A6N2MLH5 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS377490 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.7e-05
Identity = 41/97 (42.27%), Postives = 63/97 (64.95%), Query Frame = 0

Query: 1  MAMGLSAAASAKRLCFVVGVLLMVASTHFLAVEGRVLKSVAEKLAVGE-EKIE-ALKPIG 60
          M + ++  +S + L FV+G+LL+V ST   AV  R L+S        E ++++ A +  G
Sbjct: 1  MEISMTKGSSLRSLWFVLGLLLLVVSTEMRAVHCRALRSATSTTTATEYQQVDGAQESKG 60

Query: 61 VAAYMEKVNSLSSSSRSAFRSLSFVLASGPSKKGPGH 96
          +A+++  V+S +SSSRS+ RS  F LASGPSK+GPGH
Sbjct: 61 MASFV--VSSNNSSSRSSLRSFMFKLASGPSKRGPGH 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6591405.19.6e-2775.79hypothetical protein SDJN03_13751, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN55240.13.9e-2068.42hypothetical protein Csa_012906 [Cucumis sativus][more]
KAG6608443.19.6e-1964.21hypothetical protein SDJN03_01785, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0064422.15.8e-1671.23hypothetical protein E6C27_scaffold255G001300 [Cucumis melo var. makuwa] >TYK201... [more]
XP_034677217.17.1e-0645.56uncharacterized protein LOC117907698 [Vitis riparia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KZV61.9e-2068.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641720 PE=4 SV=1[more]
A0A5D3D9C42.8e-1671.23Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5B7BBR48.2e-0848.86Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_035355... [more]
A0A061FFY14.5e-0644.94Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_034774 PE=4 SV=1[more]
A0A6N2MLH51.7e-0542.27Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS377490 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg016406.1Spg016406.1mRNA