Spg016345 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg016345
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Protein recA
Location	scaffold9: 40118930 .. 40124942 (+)
RNA-Seq Expression	Spg016345
Synteny	Spg016345

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTCTATAAGTTTAATAAACTCTCGCTCGGTTCTCTTCATTCTCAGTATCTCTTCACTCTTCACTCTCAGTGCTTCTCAGTTTCGCTTTGCTTACCTTCGCCTATGGATTTCGTTTCGAATCCACTGGCTTGCAAGACTCTCTCATGCCACACTCTGTTTCCGCCATGCGCAACACCTTCCCGCCGCCGCCAATGCTTGCATTCTTCACTCTCCAATGCAGGCAAGCGAGTCGGAAAGCTTCCGTGAGTTCGAAGTTAATGTTAATGGCGCTCTTTCCAGTGACTTTGATCCTCGCTCCGTCGACGAGGTACTCATGTCGTTCTTTATTCTCCAAATTTGCTGCTCACCTTGGCTGGCTTGTGTTATTTTTTTTTTCTTCCTAATTTTGGGTCAGAAATGCTTGTAATTATTTTTTTTTATCACTTTTGGCCGTTTCTTTTCGCTCCGCTCATGGAGTTTTTCTTTAGAACCCTCCAAAACTTTGTTTAGGGTTTTCGCTTCTAAAGGGAGTCAATGCGATTACAACCAGAGGGAGAAAAGATCATCTGCGAATCGACGATGATCGTTTCCTGTGATATGTTGCTTTATCAACAGTTATCTACTTATTAGTTATGAATTTCTTAGATACTGCAAATTTTGTGTTGTCCCAGAAGAAGGCATTGGAAGCAGCAATGAATGACATAAATAGCTCATTTGGGAAAGGAAGTGTTACACGATTCAGAAAGTGCAGGTGTAGCGTTAGTGTATTTTTTTTTTTCTTTCTTATGTATTTATATTGTTCCTGGAGAAGGCCGTAAAACTTGAAAATTTTCACCTGGTCAACAGGGTTTTATTGATTCTTTAAGTTTTGTATATTTACTAGGTAATAGGCTGGTTGGAAAATTTTCTAGTAAAATTACTTCGGGAAATTTTGCATTTCTTAAAAGCATCATAATGCAAGTTCAATGTTGTGGATTTTATTGCCAGGTTTAAATGTCTGTTGTTTTCTGACCATTCAGGGAAACTTTCCCAAGTGGCTGTTTGACGTTAGACTGTGCCTTAGGAGGCAGAATTGTTGAGGTATGTTCACTTGTTCTGGGGGGTTAGGGTATTAAAGTAAAGGAATTTGTCAAGTTGTGGGAATTGGCATACCAAACAGCTTCCAGAATGGAGAAGGGGGGTTGATGCCTCTGCAAGTTCAAATAGACAGTTGTAAGAAATATCTCTGCATTATAATTATATTTTTAATTTTTGGGATTGTACATTGTGATTTTCTAAAATTCTTTAAATGTCTGTAATACCACATGCTTATTACATATAGGTACATGGACAATGTGAACTTGTGAAGTAGACAAGGTTGTTTAGAAAGAATTAACTTTTGAAGATAAGGTGGTCTCAAACATGTTTGTAATTTTAGAAAACTTCCGTTTATTTTCTTCTTTTTTATTGTATGAATGAACATTACACGTCTTGGATATTTTACTTCCTGAGCAATGAGTTACATTGTTGCAAAAAGATGATAGTTTGCATCATTTTTTTTCCAGATGTTTGAACCAGAAAGTAGTGGAAAGACCACCCTAGCATTGCATGAAATTGCAGAAGTTCAGGTACATGCTTATATATATTGTTTCTTCTCACTTTTCTTTAATTTTTACTTACCGAGGGGCTGGGAGGCACTAAAAATTATACTAGTTTTGCCTGTTACATGAAGAATGCGATGCTTGTGGATGCAGAGCATGCCTTTGATCCAGCATATGCTAAAGCAGTAGGAGTGAATGTAGAAAATTTGATTGTCTGCCAAACCTTGGTCATGGAGTGATGGCACTTGAGAGTAACATATCCTAGTTTGTCTTTTACCATTTCTTGAATGAAATAGAGCTTGTGGCTTTTGGCTATGGGGATACTTGTGACATATGTGTATTGATGGATGAATATTCTTATATCAATTGCAGATCGTTTGTGTAGATCTCATTTGTGTTGGTTCTGCCTCTACCTAACGCCGAAATTGAAGATACTTTTATCACCTTCTTGAGTTTCACAAACTCTTTATTGTGAGATTGCCAATCTTACATTTCGCATCCTTTCTTTCTAGGGTGAGATTGGTATGCAGCAAATGCGTCTGCAAGCACGCCTCATGAGTCAAGCTTTGCCTATAATGTCTGGAAATGCCTCAAAAGTTGGTTGCATTCTCATTTTTTTGAATTAAATACGATATAAGGTTATTTTCACCCTTCATTTAGGTTTAATAATCATCCACTCTTTAAAGTTGGGTAGATTTTGTGCATGGTAATGGATGGTTGGGGTATTTTTCTTAGGGGTTTCTTTAGTTTTAGGGTTTAGTTTTTCTTTTAACTGCATGGATATAATTCTTTTTTTAAATGATGCTATATTTGTGTAACTTTACAATGATGAATGAAAAGTTATGTTTGTTGTTCTCAGAACTAAATAAATAAAAACAAAAATCATTATCAGTTTTGCCCGGCTAGGTATATTGAATCTAGTCATAAATTGTGATAAAATTCTACTCTAATTTTGTTTCTAGTACTGTATCAATATCCTCATATGTAAAATATTTCAAAGCATGATGGTATTGCTGTTCTGAATTTTATTAGATTATTGTGTACCATGGGATCTAGAAATGACAAGTGGAGGAATTGTGCTAAATTTCGTTGCTTCACTTCGACTTGAAATATGTCCTGTTGCAAAGCTAAAGTCTGTAAGAATGCTCTCTGTTATTTGCTTTACCTGAACCAATTAATAGTTTCCCCGTTTTCTTTTAAAGACAAATTAAACTTATTTAGAAAGTAGAGAAGCAGTTTCAATTTACATTAATGTCTTAACATCCCATTGAGGTGAACCTTATTCTGCGTGCTTCCTTCAAGGTTAAAAGAGATGAAGAAATTGGGATTCAAATTCATGCTGGAGTACAAAGGAGCAAGGTAATCTATATATGCTTTCAAAATTTTGGAGTGCAAAGGAGCAAGGTAATTTATGCTATCAATTTTTTGCTTGGAATCTTTTCAATTCTTATTATAAGCCTTTTATTTCCTAGGATTTTTTGTGGACTTTGTACAAATTATAAATTCATATTCTTTTGCGAATACAAACTGATAATACTTTGTTAAATTTCCATATGGTGCATTTGGTTGGAATAATTCTTTGAATGAATCTTTGTTTTCTGCATTTTTTGGTTGTGTATTTTTAAGACATATTTTATATTATAACCGGCTTTCAGCAATAACCTCAACATGGTAAATGTGATGTTGTTTTAGTTCTGCCGTAAAATTGTTGCAGGAAAATTTTTAATTTTTTTTATTTAAGATTGTCTTGCTAAGGAAGATTATACATAGCAACTAGGGCTGATTGGGAGTGAAGATTATTTGCTGTTCTGTGTAGGTTATCATTCAACATAGAGAAGTATTAAGGAAGGCTATGCTTTGTAGGAAGCATACAAGTAGAAACTTAGAAGAAAGAAGACTGAGATGAGCTATTTTATGGATTCGTTAGAATATTAAAAGGTCATAGCATTTTAAGATAGGGTAGTAACTCTGAGGAGATTAGGATCTCATCACCTCCTTTGGATTCTTCTCATTTGGATACAAGCTGCTATACGTATAAATGCTAACTAAACTCCTTAGTGCTAAGCAGAAACAGGACCAGCTGATATGACAATAACTCCAAATAAATTTATGAAGCGCCTAGAGGGAGAGGTAGCCTTTGTCTCCTGAAGAATCACCACTGTGGGGTTAATACCCTAAATAAGATCCTTGATAAGCACTCGTTTCCTTGAAGATTCCAAACCATGAATATTCCAGGAGGGAATAATCATTTAGGTGGATATCGACCCGTCCAAAACACGGCTTTGGCTCCGTTTTTCATAGTTAATCATGGATTGAAGATTTTGGAGTTCCTTGACATGTTTCTGTAGCTTATTTGCTTTCGCACCCTTTTATTGTTTGTAGGGGATAGACATGCAGTATTCATGCTTGGAAAACTAGGGGGAAAAAGTGGGAGTAAGGTGGAGAGACATCCGAGTGAGGTTTGGGCTAATATTAGACTATATGTTTCGTTATGGGCCTCGATTTCTAAGGTTTTTTGTAATTATACATTAGGTATTATTTTGATTGACTGGAAACCCTTCTTGTAGTTGGGTTTCTTTTTGGGGCTTGGTTTTTTGGATGCTCTTGTATTCTTTCATTTTTTTCTCAATGAAAACTCGATTTTTCATTAAAAAAAAAGTGAAAGTATGATGGGGGTTAAAATTATCGATGGTGTCATAAGGGGGTAGCAATTTCAGCGAGTCTGGTAATTGGGTTGCAGGTAGGGGCAGGGGTGGGAATTTGGAAGAGGGAAAATAGGTAGGGCAAGGGTGGGAATTTGGAAGAGGGAGAATGGGTTTAGAGATAGAAAAGGATGGATTGGGTCCGATGATGGGTTTATCTCCAATAAAAGGGATTGTTGCTCGAAAAAAAAAAACAATAGAGAGGGCATAGTTGATAGGTAGCAAGAGGGCCTTCCTTCTTTGACTTGACTAAGGAAGAGTATGGGCTTGAAACAACCTCTTCACTTTTAGAGAGTTTGAGATGTGTGAATAGTACCTGTGGCACTATTAGATTATCATTAAAATTTGATCAAGTTCTCGGTCGATTTAAGAGGGTTTTTCTTTTATCTTGTTTTTTTCCTCGATCTTTTTCGATTTTTCCTTGTGGCCTTGATGGGTAATCTTTGATGGTGGAGGTGCTTTTGCATCCTCCCTTTAGGAAGAGGGGCAAAGTGTTGTTGCAAACCACTTTCTTGGGATTTTTTTAGAAAAGTAAAAAAAAAAAAAAAAAAATTGAAAAAAATTGGAGAGAATGGGTGGTTTTGAAACTATTTAGAAAAATAGGGTATCGTGTTTCTTGAAGAATAGGTACGAGCCTAAAAATATAGCCAATAACTCTTGTTCAACCCCCAACTTAACTCATTGCTCGTCCCTGAGTAATGCTAGGCTAAAAGACTCCTCTAAACTTGCTTTCATCCCGCTTGCATACCAAAGAGCTTAACTATTAGCAACATAGTTACTTTTTGCCAAAACTCCCTTTTTTAATGCATACAACATCTCAAAATGCAGTGCTTCAAAACAATTCAGCCCCCAAAACTTGGTATTTCTCAAAACTTTAGGCCCCGTTTGATAACCATTTGGTTTTTTGTTTTTGGTTTTTGAAAATTTGGCTTGTTTTCTTCCAATTTTCCTACCATGGTTTTCATATTTGCCAACGACACATTTGAGTTCCTAGCCAAATTCTAAAAACAAAAATAAGTTTTTGAAAACTACTTTTTTTAGTTTTCAAATTTTGCTTGGTTTTTAAAAACAAGGAAAGAAAAGTATTAGCAAAACATAGAAACTTGTAGGTGGAAGTAGGATTTATAAGCTTAATTTTCAAAAACCAAAAACCAAAAACCAAATGGTTATCAAACGGGGCCTTAGTGTTCTGTTTTTGGTCCACTAGCTTAGCCTATTTTGACAAGTCATCATATCCGATTGCACCAGCCTACTGATATCAAGCAAGCTACTAACCTTCTAACTTAGCTCAAACCTTAATCCTAAAGCTTGCTAAACAATCCTACAATCCTTATGCCCAACTTCTACTTTCTACCAAGCTCAACCTTGAACTTCTCTCAGGCTTTTTATTATTTTTTTTTACCAACTTAGAAAGCCTCATAGCTCATCACCTAATGAGAACTGCACTCATTTCTCTTAAGATTTCCTAAGATAACTTTCTAGCAGCTACTTCCTTGCTTCTCAGAGTGGAAACACTTTCTGGTGAAGCTCACCTAAGACCTGAGGAAGATAGAAACTTTCAAGCCAACACTCATCCCTTTTTTCATCTCATATTGTCTTTTCTTTTTCTGATCATTTTTAGAATGCTGTCTTTCCCTTGAGCTACTTTTTGACGCAGGGGCAAATTATGGGTATCATACATCCCCTGGTTACTAGGGAAGCTCCAGGAAATAGACAACATCCAAAAAGGGAGAGGAGTGCATCCTAG

mRNA sequence

ATGTGTTCTATAAGTTTAATAAACTCTCGCTCGGTTCTCTTCATTCTCAGTATCTCTTCACTCTTCACTCTCAGTGCTTCTCAGTTTCGCTTTGCTTACCTTCGCCTATGGATTTCGTTTCGAATCCACTGGCTTGCAAGACTCTCTCATGCCACACTCTGTTTCCGCCATGCGCAACACCTTCCCGCCGCCGCCAATGCTTGCATTCTTCACTCTCCAATGCAGGCAAGCGAGTCGGAAAGCTTCCGTGAGTTCGAAGTTAATGTTAATGGCGCTCTTTCCAGTGACTTTGATCCTCGCTCCGTCGACGAGAAGAAGGCATTGGAAGCAGCAATGAATGACATAAATAGCTCATTTGGGAAAGGAAGTGTTACACGATTCAGAAAGTGCAGGGAAACTTTCCCAAGTGGCTGTTTGACGTTAGACTGTGCCTTAGGAGGCAGAATTGTTGAGATGTTTGAACCAGAAAGTAGTGGAAAGACCACCCTAGCATTGCATGAAATTGCAGAAGTTCAGAATGCGATGCTTGTGGATGCAGAGCATGCCTTTGATCCAGCATATGCTAAAGCAGTAGGAGTGAATGTAGAAAATTTGATTGGTGAGATTGGTATGCAGCAAATGCGTCTGCAAGCACGCCTCATGAGTCAAGCTTTGCCTATAATGTCTGGAAATGCCTCAAAAGTTGATTATTGTGTACCATGGGATCTAGAAATGACAAGTGGAGGAATTGTGCTAAATTTCGTTGCTTCACTTCGACTTGAAATATGTCCTGTTGCAAAGCTAAAGTCTGTGAACCTTATTCTGCGTGCTTCCTTCAAGGTTAAAAGAGATGAAGAAATTGGGATTCAAATTCATGCTGGAGTACAAAGGAGCAAGGTTATCATTCAACATAGAGAAGTATTAAGGAAGGCTATGCTTTGTAGGAAGCATACAAGGGATAGACATGCAGTATTCATGCTTGGAAAACTAGGGGGAAAAAGTGGGAGTAAGGTGGAGAGACATCCGAGTGAGGGGCAAATTATGGGTATCATACATCCCCTGGTTACTAGGGAAGCTCCAGGAAATAGACAACATCCAAAAAGGGAGAGGAGTGCATCCTAG

Coding sequence (CDS)

ATGTGTTCTATAAGTTTAATAAACTCTCGCTCGGTTCTCTTCATTCTCAGTATCTCTTCACTCTTCACTCTCAGTGCTTCTCAGTTTCGCTTTGCTTACCTTCGCCTATGGATTTCGTTTCGAATCCACTGGCTTGCAAGACTCTCTCATGCCACACTCTGTTTCCGCCATGCGCAACACCTTCCCGCCGCCGCCAATGCTTGCATTCTTCACTCTCCAATGCAGGCAAGCGAGTCGGAAAGCTTCCGTGAGTTCGAAGTTAATGTTAATGGCGCTCTTTCCAGTGACTTTGATCCTCGCTCCGTCGACGAGAAGAAGGCATTGGAAGCAGCAATGAATGACATAAATAGCTCATTTGGGAAAGGAAGTGTTACACGATTCAGAAAGTGCAGGGAAACTTTCCCAAGTGGCTGTTTGACGTTAGACTGTGCCTTAGGAGGCAGAATTGTTGAGATGTTTGAACCAGAAAGTAGTGGAAAGACCACCCTAGCATTGCATGAAATTGCAGAAGTTCAGAATGCGATGCTTGTGGATGCAGAGCATGCCTTTGATCCAGCATATGCTAAAGCAGTAGGAGTGAATGTAGAAAATTTGATTGGTGAGATTGGTATGCAGCAAATGCGTCTGCAAGCACGCCTCATGAGTCAAGCTTTGCCTATAATGTCTGGAAATGCCTCAAAAGTTGATTATTGTGTACCATGGGATCTAGAAATGACAAGTGGAGGAATTGTGCTAAATTTCGTTGCTTCACTTCGACTTGAAATATGTCCTGTTGCAAAGCTAAAGTCTGTGAACCTTATTCTGCGTGCTTCCTTCAAGGTTAAAAGAGATGAAGAAATTGGGATTCAAATTCATGCTGGAGTACAAAGGAGCAAGGTTATCATTCAACATAGAGAAGTATTAAGGAAGGCTATGCTTTGTAGGAAGCATACAAGGGATAGACATGCAGTATTCATGCTTGGAAAACTAGGGGGAAAAAGTGGGAGTAAGGTGGAGAGACATCCGAGTGAGGGGCAAATTATGGGTATCATACATCCCCTGGTTACTAGGGAAGCTCCAGGAAATAGACAACATCCAAAAAGGGAGAGGAGTGCATCCTAG

Protein sequence

MCSISLINSRSVLFILSISSLFTLSASQFRFAYLRLWISFRIHWLARLSHATLCFRHAQHLPAAANACILHSPMQASESESFREFEVNVNGALSSDFDPRSVDEKKALEAAMNDINSSFGKGSVTRFRKCRETFPSGCLTLDCALGGRIVEMFEPESSGKTTLALHEIAEVQNAMLVDAEHAFDPAYAKAVGVNVENLIGEIGMQQMRLQARLMSQALPIMSGNASKVDYCVPWDLEMTSGGIVLNFVASLRLEICPVAKLKSVNLILRASFKVKRDEEIGIQIHAGVQRSKVIIQHREVLRKAMLCRKHTRDRHAVFMLGKLGGKSGSKVERHPSEGQIMGIIHPLVTREAPGNRQHPKRERSAS

Homology

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BLAST of Spg016345 vs. NCBI nr
Match: XP_008444273.1 (PREDICTED: DNA repair protein recA homolog 1, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 249.6 bits (636), Expect = 4.2e-62
Identity = 160/277 (57.76%), Postives = 171/277 (61.73%), Query Frame = 0


Query: 84  EFEVNVNGALSSDFDPRSVDEKKALEAAMNDINSSFGKGSVTRFRKCR----ETFPSGCL 143
           EFEVNVNGALS DFDPRSVD KKALEAAMNDIN SFGKGSVTR         ETFPSGCL
Sbjct: 49  EFEVNVNGALSGDFDPRSVDRKKALEAAMNDINGSFGKGSVTRLGSAGGALVETFPSGCL 108

Query: 144 TLDCALG-----GRIVEMFEPESSGKTTLALHEIAEVQ----NAMLVDAEHAFDPAYAKA 203
           TLDCALG     GRIVE+F PESSGKTTLALH IAEVQ    NAMLVDAEHAFDPAY+KA
Sbjct: 109 TLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKA 168

Query: 204 VGVNVENLI-----------------------------------------GEIGMQQMRL 263
           VGV+VENLI                                         GEIGMQQM L
Sbjct: 169 VGVDVENLIVCQPDHGEMALEIADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGL 228

Query: 264 QARLMSQALPIMSGNASKVDYCVPW-------------DLEMTSGGIVLNFVASLRLEIC 294
           QARLMSQAL  MSGNASK    + +             + E+TSGGI L F ASLRLEI 
Sbjct: 229 QARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEIR 288

[Close]

BLAST of Spg016345 vs. NCBI nr
Match: XP_008444275.1 (PREDICTED: DNA repair protein recA homolog 1, chloroplastic isoform X3 [Cucumis melo])

HSP 1 Score: 249.6 bits (636), Expect = 4.2e-62
Identity = 160/277 (57.76%), Postives = 171/277 (61.73%), Query Frame = 0


Query: 84  EFEVNVNGALSSDFDPRSVDEKKALEAAMNDINSSFGKGSVTRFRKCR----ETFPSGCL 143
           EFEVNVNGALS DFDPRSVD KKALEAAMNDIN SFGKGSVTR         ETFPSGCL
Sbjct: 49  EFEVNVNGALSGDFDPRSVDRKKALEAAMNDINGSFGKGSVTRLGSAGGALVETFPSGCL 108

Query: 144 TLDCALG-----GRIVEMFEPESSGKTTLALHEIAEVQ----NAMLVDAEHAFDPAYAKA 203
           TLDCALG     GRIVE+F PESSGKTTLALH IAEVQ    NAMLVDAEHAFDPAY+KA
Sbjct: 109 TLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKA 168

Query: 204 VGVNVENLI-----------------------------------------GEIGMQQMRL 263
           VGV+VENLI                                         GEIGMQQM L
Sbjct: 169 VGVDVENLIVCQPDHGEMALEIADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGL 228

Query: 264 QARLMSQALPIMSGNASKVDYCVPW-------------DLEMTSGGIVLNFVASLRLEIC 294
           QARLMSQAL  MSGNASK    + +             + E+TSGGI L F ASLRLEI 
Sbjct: 229 QARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEIR 288

[Close]

BLAST of Spg016345 vs. NCBI nr
Match: XP_038898981.1 (DNA repair protein recA homolog 1, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 248.8 bits (634), Expect = 7.1e-62
Identity = 160/275 (58.18%), Postives = 171/275 (62.18%), Query Frame = 0


Query: 84  EFEVNVNGALSSDFDPRSVDEKKALEAAMNDINSSFGKGSVTRFRKCR----ETFPSGCL 143
           EFEVNVNGALS DFDPRSVD KKALEAAMNDINSSFGKGSVTR         ETFPSGCL
Sbjct: 50  EFEVNVNGALSGDFDPRSVDRKKALEAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCL 109

Query: 144 TLDCALG-----GRIVEMFEPESSGKTTLALHEIAEVQ----NAMLVDAEHAFDPAYAKA 203
           TLDCALG     GRIVE+F PESSGKTTLALH IAEVQ    NAMLVDAEHAFDPAY+KA
Sbjct: 110 TLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKA 169

Query: 204 VGVNVENLI---------------------------------------GEIGMQQMRLQA 263
           VGV+VENLI                                       GEIGMQQM LQA
Sbjct: 170 VGVDVENLIVCQPDHGEMALENRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQA 229

Query: 264 RLMSQALPIMSGNASKVDYCVPW-------------DLEMTSGGIVLNFVASLRLEICPV 294
           RLMSQAL  MSGNASK    + +             + E+TSGGI L F ASLRLEI  +
Sbjct: 230 RLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEIRSI 289

[Close]

BLAST of Spg016345 vs. NCBI nr
Match: XP_038898980.1 (DNA repair protein recA homolog 1, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 248.1 bits (632), Expect = 1.2e-61
Identity = 160/277 (57.76%), Postives = 171/277 (61.73%), Query Frame = 0


Query: 84  EFEVNVNGALSSDFDPRSVDEKKALEAAMNDINSSFGKGSVTRFRKCR----ETFPSGCL 143
           EFEVNVNGALS DFDPRSVD KKALEAAMNDINSSFGKGSVTR         ETFPSGCL
Sbjct: 50  EFEVNVNGALSGDFDPRSVDRKKALEAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCL 109

Query: 144 TLDCALG-----GRIVEMFEPESSGKTTLALHEIAEVQ----NAMLVDAEHAFDPAYAKA 203
           TLDCALG     GRIVE+F PESSGKTTLALH IAEVQ    NAMLVDAEHAFDPAY+KA
Sbjct: 110 TLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKA 169

Query: 204 VGVNVENLI-----------------------------------------GEIGMQQMRL 263
           VGV+VENLI                                         GEIGMQQM L
Sbjct: 170 VGVDVENLIVCQPDHGEMALEIADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGL 229

Query: 264 QARLMSQALPIMSGNASKVDYCVPW-------------DLEMTSGGIVLNFVASLRLEIC 294
           QARLMSQAL  MSGNASK    + +             + E+TSGGI L F ASLRLEI 
Sbjct: 230 QARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEIR 289

[Close]

BLAST of Spg016345 vs. NCBI nr
Match: KAG6608007.1 (DNA repair protein recA-like 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 245.7 bits (626), Expect = 6.0e-61
Identity = 159/277 (57.40%), Postives = 170/277 (61.37%), Query Frame = 0


Query: 84  EFEVNVNGALSSDFDPRSVDEKKALEAAMNDINSSFGKGSVTRFRKCR----ETFPSGCL 143
           EF+VNVNGALS DFDPRSVD KKALEAAMNDINSSFGKGSVTR         ETFPSGCL
Sbjct: 49  EFDVNVNGALSGDFDPRSVDRKKALEAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCL 108

Query: 144 TLDCALG-----GRIVEMFEPESSGKTTLALHEIAEVQ----NAMLVDAEHAFDPAYAKA 203
           TLDCALG     GRIVE+F PESSGKTTLALH IAEVQ    NAMLVDAEHAFDPAY+KA
Sbjct: 109 TLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKA 168

Query: 204 VGVNVENLI-----------------------------------------GEIGMQQMRL 263
           VGV+VENLI                                         GEIGMQQM L
Sbjct: 169 VGVDVENLIVCQPDHGEMALEIADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGL 228

Query: 264 QARLMSQALPIMSGNASKVDYCVPW-------------DLEMTSGGIVLNFVASLRLEIC 294
           QARLMSQAL  MSGNASK    + +             + E+TSGGI L F ASLRLEI 
Sbjct: 229 QARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEIR 288

[Close]

BLAST of Spg016345 vs. ExPASy Swiss-Prot
Match: Q39199 (DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 8.2e-53
Identity = 141/277 (50.90%), Postives = 161/277 (58.12%), Query Frame = 0


Query: 84  EFEVNVNGALSSDFDPRSVDEKKALEAAMNDINSSFGKGSVTRFRKCR----ETFPSGCL 143
           EF+  +NGALS D D R +D +KALEAAMNDINSSFGKGSVTR         ETF SG L
Sbjct: 63  EFDDRINGALSPDADSRFLDRQKALEAAMNDINSSFGKGSVTRLGSAGGALVETFSSGIL 122

Query: 144 TLDCALG-----GRIVEMFEPESSGKTTLALHEIAEVQ----NAMLVDAEHAFDPAYAKA 203
           TLD ALG     GR+VE++ PESSGKTTLALH IAEVQ    NAMLVDAEHAFDPAY+KA
Sbjct: 123 TLDLALGGGLPKGRVVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKA 182

Query: 204 VGVNVENLI-----------------------------------------GEIGMQQMRL 263
           +GV+VENLI                                         GEIGMQQM L
Sbjct: 183 LGVDVENLIVCQPDNGEMALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGL 242

Query: 264 QARLMSQALPIMSGNASKVDYCVPW-------------DLEMTSGGIVLNFVASLRLEIC 294
           QARLMSQAL  MSGNASK    + +             + E+TSGGI L F AS+RLEI 
Sbjct: 243 QARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIR 302

[Close]

BLAST of Spg016345 vs. ExPASy Swiss-Prot
Match: Q8DH70 (Protein RecA OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=recA PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.7e-29
Identity = 100/260 (38.46%), Postives = 128/260 (49.23%), Query Frame = 0


Query: 101 SVDEKKALEAAMNDINSSFGKGSVTRFRKCR----ETFPSGCLTLDCALG-----GRIVE 160
           S +++KALE A++ I  SFGKGS+ R         ET  SG LTLD ALG     GRI+E
Sbjct: 10  SPEKRKALEFAISQIERSFGKGSIMRLGDATSMKVETISSGALTLDLALGGGLPKGRIIE 69

Query: 161 MFEPESSGKTTLALHEIAEVQN----AMLVDAEHAFDPAYAKAVGVNVENLI-------- 220
           ++ PESSGKTTLALH IAEVQ     A  VDAEHA DP YA A+ V+++NL+        
Sbjct: 70  IYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYAAALRVDIQNLLVAQPDTGE 129

Query: 221 ---------------------------------GEIGMQQMRLQARLMSQALPIMSGNAS 280
                                            G++G   + LQARLMSQAL  ++GN S
Sbjct: 130 AALEIVDQLVRSTAVDIIVVDSVAALVPRAEIEGDMGESHVGLQARLMSQALRKINGNIS 189

Query: 281 KVDYCVPW-------------DLEMTSGGIVLNFVASLRLEICPVAKLKSVNLILRASFK 294
           K    V +             + E T+GG+ L F AS+RL+I  V  LK           
Sbjct: 190 KTGCTVIFLNQLRQKIGLTYGNPETTTGGVALKFYASVRLDIRRVQTLK----------- 249

[Close]

BLAST of Spg016345 vs. ExPASy Swiss-Prot
Match: B7KLB5 (Protein RecA OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN=recA PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.3e-29
Identity = 98/261 (37.55%), Postives = 127/261 (48.66%), Query Frame = 0


Query: 103 DEKKALEAAMNDINSSFGKGSVTRF----RKCRETFPSGCLTLDCALG-----GRIVEMF 162
           D++KAL   +N I  SFGKGS+ R     R   ET PSG LTLD ALG     GR++E++
Sbjct: 9   DKEKALNLVLNQIERSFGKGSIMRLGDAARMRVETIPSGALTLDLALGGGLPKGRVIEIY 68

Query: 163 EPESSGKTTLALHEIAEVQN----AMLVDAEHAFDPAYAKAVGVNVENLI---------- 222
            PESSGKTTLALH IAEVQ     A  VDAEHA DP Y++ +GV++ NL+          
Sbjct: 69  GPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYSEVLGVDIHNLLVAQPDTGESA 128

Query: 223 -------------------------------GEIGMQQMRLQARLMSQALPIMSGNASK- 282
                                          GE+G  Q+ LQARLMS+AL  ++GN  K 
Sbjct: 129 LEIVDQLVRSAAVDIVVVDSVAALVPRAEIEGEMGDNQVGLQARLMSKALRKIAGNIGKS 188

Query: 283 ---------------VDYCVPWDLEMTSGGIVLNFVASLRLEICPVAKLKSVNLILRASF 294
                          V Y  P   E+T+GG  L F AS+RL+I  +  LK  +       
Sbjct: 189 GCVVIFLNQLRQKIGVTYGSP---EVTTGGTALKFYASVRLDIRRIQTLKKGS------- 248

[Close]

BLAST of Spg016345 vs. ExPASy Swiss-Prot
Match: P48293 (Protein RecA OS=Arthrospira platensis OX=118562 GN=recA PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 8.2e-29
Identity = 97/258 (37.60%), Postives = 125/258 (48.45%), Query Frame = 0


Query: 103 DEKKALEAAMNDINSSFGKGSVTRF----RKCRETFPSGCLTLDCALG-----GRIVEMF 162
           +++KAL + +N I  SFGKGS+ R     R   ET  SG LTLD ALG     GR++E++
Sbjct: 9   EKQKALNSVLNQIEKSFGKGSIVRLGDSARMKVETISSGALTLDLALGGGLPRGRVIEIY 68

Query: 163 EPESSGKTTLALHEIAEVQN----AMLVDAEHAFDPAYAKAVGVNVENLI---------- 222
            PESSGKTTLALH IAE+Q     A  VDAEHA DP YA A+GV++ENL+          
Sbjct: 69  GPESSGKTTLALHAIAEIQKTGGIAAFVDAEHALDPTYAAALGVDIENLLVSQPDTGEMA 128

Query: 223 -------------------------------GEIGMQQMRLQARLMSQALPIMSGNASKV 282
                                          G++G   M LQARLMSQAL  ++GN  K 
Sbjct: 129 LEIVDQLVRSVAVDIVVVDSVAALVPRAEIEGDMGDSHMGLQARLMSQALRKITGNIGKS 188

Query: 283 DYCVPW-------------DLEMTSGGIVLNFVASLRLEICPVAKLKSVNLILRASFKVK 294
              V +             + E T+GG  L F AS+RL+I     LK            K
Sbjct: 189 GCTVIFLNQLRQKIGIVYGNPETTTGGNALKFYASVRLDIRRTQTLK------------K 248

[Close]

BLAST of Spg016345 vs. ExPASy Swiss-Prot
Match: B1LWT6 (Protein RecA OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831 / NBRC 15690 / NCIMB 10815 / 0-1) OX=426355 GN=recA PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.8e-28
Identity = 97/274 (35.40%), Postives = 132/274 (48.18%), Query Frame = 0


Query: 96  DFDPRSVDEKKALEAAMNDINSSFGKGSVTRFRKCR-----ETFPSGCLTLDCALG---- 155
           D  P   D+ KA++AA++ I  +FGKGS+ R  K       ET  +G L LD ALG    
Sbjct: 10  DMPPVDKDKSKAIDAALSQIERAFGKGSIMRLGKSDKVQEVETVSTGSLGLDIALGVGGL 69

Query: 156 --GRIVEMFEPESSGKTTLALHEIAEVQN----AMLVDAEHAFDPAYAKAVGVNVENLI- 215
             GR++E++ PESSGKTTLALH IAE Q        VDAEHA DP YA+ +GVN+++L+ 
Sbjct: 70  PRGRVIEIYGPESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLDDLLI 129

Query: 216 ----------------------------------------GEIGMQQMRLQARLMSQALP 275
                                                   GE+G  Q  LQARLMSQAL 
Sbjct: 130 SQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGESQPGLQARLMSQALR 189

Query: 276 IMSGNASKVDYCVPW-------------DLEMTSGGIVLNFVASLRLEICPVAKLKSVNL 301
            ++G+ S+ +  V +               E T+GG  L F AS+RL+I  ++ LK    
Sbjct: 190 KLTGSISRSNCMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRISTLKD--- 249

[Close]

BLAST of Spg016345 vs. ExPASy TrEMBL
Match: A0A1S3BAR5 (DNA repair protein recA homolog 1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487647 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.0e-62
Identity = 160/277 (57.76%), Postives = 171/277 (61.73%), Query Frame = 0


Query: 84  EFEVNVNGALSSDFDPRSVDEKKALEAAMNDINSSFGKGSVTRFRKCR----ETFPSGCL 143
           EFEVNVNGALS DFDPRSVD KKALEAAMNDIN SFGKGSVTR         ETFPSGCL
Sbjct: 49  EFEVNVNGALSGDFDPRSVDRKKALEAAMNDINGSFGKGSVTRLGSAGGALVETFPSGCL 108

Query: 144 TLDCALG-----GRIVEMFEPESSGKTTLALHEIAEVQ----NAMLVDAEHAFDPAYAKA 203
           TLDCALG     GRIVE+F PESSGKTTLALH IAEVQ    NAMLVDAEHAFDPAY+KA
Sbjct: 109 TLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKA 168

Query: 204 VGVNVENLI-----------------------------------------GEIGMQQMRL 263
           VGV+VENLI                                         GEIGMQQM L
Sbjct: 169 VGVDVENLIVCQPDHGEMALEIADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGL 228

Query: 264 QARLMSQALPIMSGNASKVDYCVPW-------------DLEMTSGGIVLNFVASLRLEIC 294
           QARLMSQAL  MSGNASK    + +             + E+TSGGI L F ASLRLEI 
Sbjct: 229 QARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEIR 288

[Close]

BLAST of Spg016345 vs. ExPASy TrEMBL
Match: A0A1S3B9I5 (DNA repair protein recA homolog 1, chloroplastic isoform X3 OS=Cucumis melo OX=3656 GN=LOC103487647 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.0e-62
Identity = 160/277 (57.76%), Postives = 171/277 (61.73%), Query Frame = 0


Query: 84  EFEVNVNGALSSDFDPRSVDEKKALEAAMNDINSSFGKGSVTRFRKCR----ETFPSGCL 143
           EFEVNVNGALS DFDPRSVD KKALEAAMNDIN SFGKGSVTR         ETFPSGCL
Sbjct: 49  EFEVNVNGALSGDFDPRSVDRKKALEAAMNDINGSFGKGSVTRLGSAGGALVETFPSGCL 108

Query: 144 TLDCALG-----GRIVEMFEPESSGKTTLALHEIAEVQ----NAMLVDAEHAFDPAYAKA 203
           TLDCALG     GRIVE+F PESSGKTTLALH IAEVQ    NAMLVDAEHAFDPAY+KA
Sbjct: 109 TLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKA 168

Query: 204 VGVNVENLI-----------------------------------------GEIGMQQMRL 263
           VGV+VENLI                                         GEIGMQQM L
Sbjct: 169 VGVDVENLIVCQPDHGEMALEIADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGL 228

Query: 264 QARLMSQALPIMSGNASKVDYCVPW-------------DLEMTSGGIVLNFVASLRLEIC 294
           QARLMSQAL  MSGNASK    + +             + E+TSGGI L F ASLRLEI 
Sbjct: 229 QARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEIR 288

[Close]

BLAST of Spg016345 vs. ExPASy TrEMBL
Match: A0A6J1IUU1 (DNA repair protein recA homolog 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111480803 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 2.9e-61
Identity = 159/277 (57.40%), Postives = 170/277 (61.37%), Query Frame = 0


Query: 84  EFEVNVNGALSSDFDPRSVDEKKALEAAMNDINSSFGKGSVTRFRKCR----ETFPSGCL 143
           EF+VNVNGALS DFDPRSVD KKALEAAMNDINSSFGKGSVTR         ETFPSGCL
Sbjct: 49  EFDVNVNGALSGDFDPRSVDRKKALEAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCL 108

Query: 144 TLDCALG-----GRIVEMFEPESSGKTTLALHEIAEVQ----NAMLVDAEHAFDPAYAKA 203
           TLDCALG     GRIVE+F PESSGKTTLALH IAEVQ    NAMLVDAEHAFDPAY+KA
Sbjct: 109 TLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKA 168

Query: 204 VGVNVENLI-----------------------------------------GEIGMQQMRL 263
           VGV+VENLI                                         GEIGMQQM L
Sbjct: 169 VGVDVENLIVCQPDHGEMALEIADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGL 228

Query: 264 QARLMSQALPIMSGNASKVDYCVPW-------------DLEMTSGGIVLNFVASLRLEIC 294
           QARLMSQAL  MSGNASK    + +             + E+TSGGI L F ASLRLEI 
Sbjct: 229 QARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEIR 288

[Close]

BLAST of Spg016345 vs. ExPASy TrEMBL
Match: A0A6J1C5R2 (DNA repair protein recA homolog 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008660 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 3.8e-61
Identity = 158/277 (57.04%), Postives = 170/277 (61.37%), Query Frame = 0


Query: 84  EFEVNVNGALSSDFDPRSVDEKKALEAAMNDINSSFGKGSVTRFRKCR----ETFPSGCL 143
           EFE NVNGALS DFDPRSVD KKALEAAMNDIN+SFGKGSVTR         ETFPSGCL
Sbjct: 49  EFEANVNGALSGDFDPRSVDRKKALEAAMNDINNSFGKGSVTRLGSAGGALVETFPSGCL 108

Query: 144 TLDCALG-----GRIVEMFEPESSGKTTLALHEIAEVQ----NAMLVDAEHAFDPAYAKA 203
           TLDCALG     GRIVE+F PESSGKTTLALH IAEVQ    NAMLVDAEHAFDPAY+KA
Sbjct: 109 TLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKA 168

Query: 204 VGVNVENLI-----------------------------------------GEIGMQQMRL 263
           VGV+VENLI                                         GEIGMQQM L
Sbjct: 169 VGVDVENLIVCQPDHGEMALEIADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGL 228

Query: 264 QARLMSQALPIMSGNASKVDYCVPW-------------DLEMTSGGIVLNFVASLRLEIC 294
           QARLMSQAL  MSGNASK    + +             + E+TSGGI L F ASLRLEI 
Sbjct: 229 QARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEIR 288

[Close]

BLAST of Spg016345 vs. ExPASy TrEMBL
Match: A0A0A0LBT0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G524580 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.1e-60
Identity = 157/277 (56.68%), Postives = 169/277 (61.01%), Query Frame = 0


Query: 84  EFEVNVNGALSSDFDPRSVDEKKALEAAMNDINSSFGKGSVTRFRKCR----ETFPSGCL 143
           EFEVN+NGALS DFDPRSVD KKALEAAMNDIN SFGKGSVTR         ETFPSGCL
Sbjct: 49  EFEVNLNGALSGDFDPRSVDRKKALEAAMNDINGSFGKGSVTRLGSAGGALVETFPSGCL 108

Query: 144 TLDCALG-----GRIVEMFEPESSGKTTLALHEIAEVQ----NAMLVDAEHAFDPAYAKA 203
           TLDCALG     GRIVE+F PESSGKTTLALH IAEVQ    NAMLVDAEHAFDP Y+KA
Sbjct: 109 TLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPTYSKA 168

Query: 204 VGVNVENLI-----------------------------------------GEIGMQQMRL 263
           VGV+VENLI                                         GEIGMQQM L
Sbjct: 169 VGVDVENLIVCQPDHGEMALEIADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGL 228

Query: 264 QARLMSQALPIMSGNASKVDYCVPW-------------DLEMTSGGIVLNFVASLRLEIC 294
           QARLMSQAL  MSGNASK    + +             + E+TSGGI L F ASLRLEI 
Sbjct: 229 QARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEIR 288

[Close]

BLAST of Spg016345 vs. TAIR 10
Match: AT1G79050.2 (recA DNA recombination family protein )

HSP 1 Score: 210.7 bits (535), Expect = 2.0e-54
Identity = 143/287 (49.83%), Postives = 166/287 (57.84%), Query Frame = 0


Query: 84  EFEVNVNGALSSDFDPRSVDEKKALEAAMNDINSSFGKGSVTRFRKCR----ETFPSGCL 143
           EF+  +NGALS D D R +D +KALEAAMNDINSSFGKGSVTR         ETF SG L
Sbjct: 63  EFDDRINGALSPDADSRFLDRQKALEAAMNDINSSFGKGSVTRLGSAGGALVETFSSGIL 122

Query: 144 TLDCALG-----GRIVEMFEPESSGKTTLALHEIAEVQ----NAMLVDAEHAFDPAYAKA 203
           TLD ALG     GR+VE++ PESSGKTTLALH IAEVQ    NAMLVDAEHAFDPAY+KA
Sbjct: 123 TLDLALGGGLPKGRVVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKA 182

Query: 204 VGVNVENLI-----------------------------------------GEIGMQQMRL 263
           +GV+VENLI                                         GEIGMQQM L
Sbjct: 183 LGVDVENLIVCQPDNGEMALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGL 242

Query: 264 QARLMSQALPIMSGNASKVDYCVPW-------------DLEMTSGGIVLNFVASLRLEIC 304
           QARLMSQAL  MSGNASK    + +             + E+TSGGI L F AS+RLEI 
Sbjct: 243 QARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIR 302

[Close]

BLAST of Spg016345 vs. TAIR 10
Match: AT1G79050.1 (recA DNA recombination family protein )

HSP 1 Score: 209.1 bits (531), Expect = 5.8e-54
Identity = 141/277 (50.90%), Postives = 161/277 (58.12%), Query Frame = 0


Query: 84  EFEVNVNGALSSDFDPRSVDEKKALEAAMNDINSSFGKGSVTRFRKCR----ETFPSGCL 143
           EF+  +NGALS D D R +D +KALEAAMNDINSSFGKGSVTR         ETF SG L
Sbjct: 63  EFDDRINGALSPDADSRFLDRQKALEAAMNDINSSFGKGSVTRLGSAGGALVETFSSGIL 122

Query: 144 TLDCALG-----GRIVEMFEPESSGKTTLALHEIAEVQ----NAMLVDAEHAFDPAYAKA 203
           TLD ALG     GR+VE++ PESSGKTTLALH IAEVQ    NAMLVDAEHAFDPAY+KA
Sbjct: 123 TLDLALGGGLPKGRVVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKA 182

Query: 204 VGVNVENLI-----------------------------------------GEIGMQQMRL 263
           +GV+VENLI                                         GEIGMQQM L
Sbjct: 183 LGVDVENLIVCQPDNGEMALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGL 242

Query: 264 QARLMSQALPIMSGNASKVDYCVPW-------------DLEMTSGGIVLNFVASLRLEIC 294
           QARLMSQAL  MSGNASK    + +             + E+TSGGI L F AS+RLEI 
Sbjct: 243 QARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIR 302

[Close]

BLAST of Spg016345 vs. TAIR 10
Match: AT2G19490.1 (recA DNA recombination family protein )

HSP 1 Score: 104.0 bits (258), Expect = 2.6e-22
Identity = 85/259 (32.82%), Postives = 115/259 (44.40%), Query Frame = 0


Query: 107 ALEAAMNDINSSFGKGSVTRFRKCRE-----TFPSGCLTLDCALG------GRIVEMFEP 166
           AL+ A++ I SSFGKGS+    +         F +G   LD ALG      GR+VE++ P
Sbjct: 61  ALQQALDQITSSFGKGSIMYLGRAVSPRNVPVFSTGSFALDVALGVGGLPKGRVVEIYGP 120

Query: 167 ESSGKTTLALHEIAEVQ----NAMLVDAEHAFDPAYAKAVGVNVENLI------------ 226
           E+SGKTTLALH IAE Q      + VDAEHA D + AKA+GVN ENL+            
Sbjct: 121 EASGKTTLALHVIAEAQKQGGTCVFVDAEHALDSSLAKAIGVNTENLLLSQPDCGEQALS 180

Query: 227 -----------------------------GEIGMQQMRLQARLMSQALPIMSGNASKVDY 286
                                        GE+G   M +QARLMSQAL  +S + S    
Sbjct: 181 LVDTLIRSGSVDVIVVDSVAALVPKGELEGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 240

Query: 287 CVPW----------------DLEMTSGGIVLNFVASLRLEICPVAKLKSVNLILRASFKV 294
            + +                  E+T GG  L F AS+RL I  +  +K            
Sbjct: 241 LLIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASMRLNIKRIGLIK------------ 300

[Close]

BLAST of Spg016345 vs. TAIR 10
Match: AT3G10140.1 (RECA homolog 3 )

HSP 1 Score: 73.2 bits (178), Expect = 5.0e-13
Identity = 50/118 (42.37%), Postives = 68/118 (57.63%), Query Frame = 0


Query: 98  DPRSVDEK-KALEAAMNDINSSFGKG---SVTRFRKCR--ETFPSGCLTLDCALG----- 157
           D R V EK  AL  A++ ++  F K    S+ RF + R      +G L LD ALG     
Sbjct: 55  DDRKVAEKDTALHLALSQLSGDFDKDSKLSLQRFYRKRRVSVISTGSLNLDLALGVGGLP 114

Query: 158 -GRIVEMFEPESSGKTTLALHEIAEVQN----AMLVDAEHAFDPAYAKAVGVNVENLI 200
            GR+VE++  E+SGKTTLALH I E Q        +DAE+A DP+ A+++GVN E L+
Sbjct: 115 KGRMVEVYGKEASGKTTLALHIIKEAQKLGGYCAYLDAENAMDPSLAESIGVNTEELL 172

[Close]

BLAST of Spg016345 vs. TAIR 10
Match: AT3G32920.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 5.1e-10
Identity = 58/186 (31.18%), Postives = 78/186 (41.94%), Query Frame = 0


Query: 134 FPSGCLTLDCALG------GRIVEMFEPESSGKTTLALHEIAEVQNAMLVDAEHAFDPAY 193
           F +G   LD ALG      GR+VE++ PE+SGKT LALH ++ +    L           
Sbjct: 15  FSTGSFALDVALGVGGLPKGRLVEIYGPEASGKTALALHMLSMLLIRSL----------- 74

Query: 194 AKAVGVNVENLI-----------------------------------------GEIGMQQ 253
           AKA+GVN ENL+                                         GE+G   
Sbjct: 75  AKAIGVNTENLLLSQPDCGKQALSLVDTLIQSGSVDVIVVDSVAALVPKGELDGEMGDAH 134

Query: 254 MRLQARLMSQALPIMSGN----------ASKVDYCVPWDLEMTSGGIVLNFVASLRLEIC 263
           M +QARLMSQAL   S +           ++V        E+TSGG  L F A +RL+I 
Sbjct: 135 MAIQARLMSQALRKFSHSLLLSQTLLIFINQVRERFGGPTEVTSGGNALKFYAPMRLDIK 189

The following BLAST results are available for this feature:

BLAST of Spg016345 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444273.1	4.2e-62	57.76	PREDICTED: DNA repair protein recA homolog 1, chloroplastic isoform X1 [Cucumis ...	[more]
XP_008444275.1	4.2e-62	57.76	PREDICTED: DNA repair protein recA homolog 1, chloroplastic isoform X3 [Cucumis ...	[more]
XP_038898981.1	7.1e-62	58.18	DNA repair protein recA homolog 1, chloroplastic isoform X2 [Benincasa hispida]	[more]
XP_038898980.1	1.2e-61	57.76	DNA repair protein recA homolog 1, chloroplastic isoform X1 [Benincasa hispida]	[more]
KAG6608007.1	6.0e-61	57.40	DNA repair protein recA-like 1, chloroplastic, partial [Cucurbita argyrosperma s...	[more]

BLAST of Spg016345 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39199	8.2e-53	50.90	DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q8DH70	1.7e-29	38.46	Protein RecA OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=recA PE...	[more]
B7KLB5	6.3e-29	37.55	Protein RecA OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN=recA PE=3 S...	[more]
P48293	8.2e-29	37.60	Protein RecA OS=Arthrospira platensis OX=118562 GN=recA PE=3 SV=1	[more]
B1LWT6	1.8e-28	35.40	Protein RecA OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / J...	[more]

BLAST of Spg016345 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BAR5	2.0e-62	57.76	DNA repair protein recA homolog 1, chloroplastic isoform X1 OS=Cucumis melo OX=3...	[more]
A0A1S3B9I5	2.0e-62	57.76	DNA repair protein recA homolog 1, chloroplastic isoform X3 OS=Cucumis melo OX=3...	[more]
A0A6J1IUU1	2.9e-61	57.40	DNA repair protein recA homolog 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1C5R2	3.8e-61	57.04	DNA repair protein recA homolog 1, chloroplastic OS=Momordica charantia OX=3673 ...	[more]
A0A0A0LBT0	1.1e-60	56.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G524580 PE=3 SV=1	[more]

BLAST of Spg016345 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79050.2	2.0e-54	49.83	recA DNA recombination family protein	[more]
AT1G79050.1	5.8e-54	50.90	recA DNA recombination family protein	[more]
AT2G19490.1	2.6e-22	32.82	recA DNA recombination family protein	[more]
AT3G10140.1	5.0e-13	42.37	RECA homolog 3	[more]
AT3G32920.1	5.1e-10	31.18	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013765	DNA recombination and repair protein RecA	PFAM	PF00154	RecA	coord: 106..199 e-value: 2.7E-26 score: 92.6 coord: 200..275 e-value: 5.6E-5 score: 22.7
IPR013765	DNA recombination and repair protein RecA	PANTHER	PTHR45900	RECA	coord: 200..299
IPR013765	DNA recombination and repair protein RecA	PANTHER	PTHR45900	RECA	coord: 101..199
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 129..200 e-value: 2.3E-18 score: 68.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 105..201
None	No IPR available	PANTHER	PTHR45900:SF1	MITOCHONDRIAL DNA REPAIR PROTEIN RECA HOMOLOG	coord: 200..299
None	No IPR available	PANTHER	PTHR45900:SF1	MITOCHONDRIAL DNA REPAIR PROTEIN RECA HOMOLOG	coord: 101..199

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg016345.1	Spg016345.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003697	single-stranded DNA binding