Spg016329 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg016329
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionvacuolar protein sorting-associated protein 45 homolog
Locationscaffold9: 41902925 .. 41903805 (-)
RNA-Seq ExpressionSpg016329
SyntenySpg016329
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTATATATGCATTGGATTTATTTGTGTTGCCTTTAGACTTCTTCTTTAATGTTGTTCTGAACTTTGATCGATCCTCAAACTTCGCATCGTTTCTGTGTCCGAGTTCTGGATGGCATTGCAACGCTTCTCTTGGCATCCGAAGAAAGATGGCACAGAAAACAAAAGTACGTATATTCTTACATTTACCGATTGCATTGAATAGATTTTGAAAGTTGCATCAGCTCTTCCATATATATTTAACTCTGGATTTGGCGTCATCAATTCATATTTGATATTTTTTTATACATTACTATCACGAATTAAGAGCCTTATTAGCTGTATTTTATACCGTTTGTTTGATAGTAATTGATAGGAGGGATGGCCCTTCGACTCGCCTACTGAATCAATGACCTATCAGGTAATTTTACTTTTTACTATATGGTTCCATTGTGTTGCTGCTGGTTTTTTGTAATTTTGTTTCTAGGCGGTGGTTCATGTATTGCTAGGTACTCAAAAGAATAAAGTGTACGTGAGAAGGACTAGAGTAAATTTTATTAAACGCTCTATGTTCTTGTGTTTTTCTTACGACGTTCAAACATCTTTTAGCACCATTTTTGCTTGTTATGTGCCCTTGAATTATCGATTAAAATTTTGGAGCCACCAACATGATCGAGATCCTATTGATTAAATATGAGATTGTTAGTTAATGGGTATTAGTTGTTACTTTCTGCATAACCACATTCACTTGTGTGGTTTTCAGGCAGTTAGAAATCTTTTATACAACGAGAACATTTATGATTCAGACCAGCTACATTTAGTGATTTTGTATGCAGTACCGTATGGGAAGGGAAGCCATGTCCAATTGATGCAACTTTTCAATAAATTGGTTTCTTGTTCTGCC

mRNA sequence

TTTATATATGCATTGGATTTATTTGTGTTGCCTTTAGACTTCTTCTTTAATGTTGTTCTGAACTTTGATCGATCCTCAAACTTCGCATCGTTTCTGTGTCCGAGTTCTGGATGGCATTGCAACGCTTCTCTTGGCATCCGAAGAAAGATGGCACAGAAAACAAAAGCAGTTAGAAATCTTTTATACAACGAGAACATTTATGATTCAGACCAGCTACATTTAGTGATTTTGTATGCAGTACCGTATGGGAAGGGAAGCCATGTCCAATTGATGCAACTTTTCAATAAATTGGTTTCTTGTTCTGCC

Coding sequence (CDS)

TTTATATATGCATTGGATTTATTTGTGTTGCCTTTAGACTTCTTCTTTAATGTTGTTCTGAACTTTGATCGATCCTCAAACTTCGCATCGTTTCTGTGTCCGAGTTCTGGATGGCATTGCAACGCTTCTCTTGGCATCCGAAGAAAGATGGCACAGAAAACAAAAGCAGTTAGAAATCTTTTATACAACGAGAACATTTATGATTCAGACCAGCTACATTTAGTGATTTTGTATGCAGTACCGTATGGGAAGGGAAGCCATGTCCAATTGATGCAACTTTTCAATAAATTGGTTTCTTGTTCTGCC

Protein sequence

FIYALDLFVLPLDFFFNVVLNFDRSSNFASFLCPSSGWHCNASLGIRRKMAQKTKAVRNLLYNENIYDSDQLHLVILYAVPYGKGSHVQLMQLFNKLVSCSA
Homology
[Close]
BLAST of Spg016329 vs. NCBI nr
Match: XP_022989784.1 (vacuolar protein sorting-associated protein 45 homolog [Cucurbita maxima])

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-06
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 55  KAVRNLLYNENIYDSDQLHLVILYAVPYGKGSHVQLMQLFNKLVSCSA 103
           +AV NLL NENI D D++ LV+LYA+ Y K S VQLMQLFNKL SCSA
Sbjct: 376 EAVTNLLNNENISDIDRVRLVMLYALRYEKESPVQLMQLFNKLASCSA 423

[Close]
BLAST of Spg016329 vs. NCBI nr
Match: XP_042440319.1 (vacuolar protein sorting-associated protein 45 homolog isoform X1 [Zingiber officinale] >KAG6476642.1 hypothetical protein ZIOFF_065887 [Zingiber officinale])

HSP 1 Score: 61.6 bits (148), Expect = 4.5e-06
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 55  KAVRNLLYNENIYDSDQLHLVILYAVPYGKGSHVQLMQLFNKLVSCSA 103
           +AV NLL NE I D D+L LV+LYA+ Y K S VQLMQLFNKL SCSA
Sbjct: 374 EAVTNLLNNEAISDVDRLRLVMLYALRYEKESPVQLMQLFNKLASCSA 421

[Close]
BLAST of Spg016329 vs. NCBI nr
Match: XP_042440320.1 (vacuolar protein sorting-associated protein 45 homolog isoform X2 [Zingiber officinale])

HSP 1 Score: 61.6 bits (148), Expect = 4.5e-06
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 55  KAVRNLLYNENIYDSDQLHLVILYAVPYGKGSHVQLMQLFNKLVSCSA 103
           +AV NLL NE I D D+L LV+LYA+ Y K S VQLMQLFNKL SCSA
Sbjct: 305 EAVTNLLNNEAISDVDRLRLVMLYALRYEKESPVQLMQLFNKLASCSA 352

[Close]
BLAST of Spg016329 vs. NCBI nr
Match: GAY39847.1 (hypothetical protein CUMW_047540 [Citrus unshiu])

HSP 1 Score: 60.8 bits (146), Expect = 7.6e-06
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 0 

Query: 40  CNASLGIRRKM----AQKTKAVRNLLYNENIYDSDQLHLVILYAVPYGKGSHVQLMQLFN 99
           CN   G   ++    +Q   AV NLL NEN+ D D+L LV+LYA+ Y K S VQLMQLFN
Sbjct: 367 CNGGQGAAFEVVDLKSQWKNAVTNLLNNENVSDIDRLRLVMLYALRYEKDSPVQLMQLFN 426

Query: 100 KLVSCSA 103
           KL S SA
Sbjct: 427 KLASRSA 433

[Close]
BLAST of Spg016329 vs. NCBI nr
Match: XP_022141512.1 (vacuolar protein sorting-associated protein 45 homolog [Momordica charantia])

HSP 1 Score: 60.8 bits (146), Expect = 7.6e-06
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 55  KAVRNLLYNENIYDSDQLHLVILYAVPYGKGSHVQLMQLFNKLVSCSA 103
           +AV NLL +E+I D D+L LV+LYA+ Y K S VQLMQLFNKL SCSA
Sbjct: 376 EAVTNLLNDESISDIDRLRLVMLYALRYEKESPVQLMQLFNKLASCSA 423

[Close]
BLAST of Spg016329 vs. ExPASy Swiss-Prot
Match: O49048 (Vacuolar protein sorting-associated protein 45 homolog OS=Arabidopsis thaliana OX=3702 GN=VPS45 PE=1 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 2.1e-06
Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 0 

Query: 55  KAVRNLLYNENIYDSDQLHLVILYAVPYGKGSHVQLMQLFNKLVSCS 102
           +AV +LL NE++ D D+L LV+LYA+ Y K + VQLMQLFNKL S S
Sbjct: 377 EAVTDLLNNESVSDIDRLRLVMLYALRYEKENPVQLMQLFNKLASRS 423

[Close]
BLAST of Spg016329 vs. ExPASy TrEMBL
Match: A0A6J1JQC3 (vacuolar protein sorting-associated protein 45 homolog OS=Cucurbita maxima OX=3661 GN=LOC111486867 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.7e-07
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 55  KAVRNLLYNENIYDSDQLHLVILYAVPYGKGSHVQLMQLFNKLVSCSA 103
           +AV NLL NENI D D++ LV+LYA+ Y K S VQLMQLFNKL SCSA
Sbjct: 376 EAVTNLLNNENISDIDRVRLVMLYALRYEKESPVQLMQLFNKLASCSA 423

[Close]
BLAST of Spg016329 vs. ExPASy TrEMBL
Match: A0A7N2MKN0 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.7e-07
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 0 

Query: 52  QKTKAVRNLLYNENIYDSDQLHLVILYAVPYGKGSHVQLMQLFNKLVSCSA 103
           Q+ +AV NLL NE++ D D+LHLV+LYA+ Y K S VQLMQLFNKL S SA
Sbjct: 50  QQRRAVTNLLNNESVSDIDRLHLVMLYALHYEKESPVQLMQLFNKLASWSA 100

[Close]
BLAST of Spg016329 vs. ExPASy TrEMBL
Match: A0A6J1CK18 (vacuolar protein sorting-associated protein 45 homolog OS=Momordica charantia OX=3673 GN=LOC111011871 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.7e-06
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 55  KAVRNLLYNENIYDSDQLHLVILYAVPYGKGSHVQLMQLFNKLVSCSA 103
           +AV NLL +E+I D D+L LV+LYA+ Y K S VQLMQLFNKL SCSA
Sbjct: 376 EAVTNLLNDESISDIDRLRLVMLYALRYEKESPVQLMQLFNKLASCSA 423

[Close]
BLAST of Spg016329 vs. ExPASy TrEMBL
Match: A0A2H5NIE2 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_047540 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.7e-06
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 0 

Query: 40  CNASLGIRRKM----AQKTKAVRNLLYNENIYDSDQLHLVILYAVPYGKGSHVQLMQLFN 99
           CN   G   ++    +Q   AV NLL NEN+ D D+L LV+LYA+ Y K S VQLMQLFN
Sbjct: 367 CNGGQGAAFEVVDLKSQWKNAVTNLLNNENVSDIDRLRLVMLYALRYEKDSPVQLMQLFN 426

Query: 100 KLVSCSA 103
           KL S SA
Sbjct: 427 KLASRSA 433

[Close]
BLAST of Spg016329 vs. ExPASy TrEMBL
Match: A0A3L6QCQ6 (Uncharacterized protein OS=Panicum miliaceum OX=4540 GN=C2845_PM12G09440 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.8e-06
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 55  KAVRNLLYNENIYDSDQLHLVILYAVPYGKGSHVQLMQLFNKLVSCSA 103
           +AV +LL NE++ D D+L LV+LYA+ Y K S VQLMQLFNKL SCSA
Sbjct: 550 EAVTSLLNNESVSDIDRLRLVMLYALRYEKESPVQLMQLFNKLASCSA 597

[Close]
BLAST of Spg016329 vs. TAIR 10
Match: AT1G77140.1 (vacuolar protein sorting 45 )

HSP 1 Score: 53.1 bits (126), Expect = 1.5e-07
Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 0 

Query: 55  KAVRNLLYNENIYDSDQLHLVILYAVPYGKGSHVQLMQLFNKLVSCS 102
           +AV +LL NE++ D D+L LV+LYA+ Y K + VQLMQLFNKL S S
Sbjct: 377 EAVTDLLNNESVSDIDRLRLVMLYALRYEKENPVQLMQLFNKLASRS 423

The following BLAST results are available for this feature:
BLAST of Spg016329 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022989784.11.2e-0668.75vacuolar protein sorting-associated protein 45 homolog [Cucurbita maxima][more]
XP_042440319.14.5e-0668.75vacuolar protein sorting-associated protein 45 homolog isoform X1 [Zingiber offi... [more]
XP_042440320.14.5e-0668.75vacuolar protein sorting-associated protein 45 homolog isoform X2 [Zingiber offi... [more]
GAY39847.17.6e-0653.73hypothetical protein CUMW_047540 [Citrus unshiu][more]
XP_022141512.17.6e-0666.67vacuolar protein sorting-associated protein 45 homolog [Momordica charantia][more]
BLAST of Spg016329 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O490482.1e-0659.57Vacuolar protein sorting-associated protein 45 homolog OS=Arabidopsis thaliana O... [more]
BLAST of Spg016329 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JQC35.7e-0768.75vacuolar protein sorting-associated protein 45 homolog OS=Cucurbita maxima OX=36... [more]
A0A7N2MKN05.7e-0764.71Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1[more]
A0A6J1CK183.7e-0666.67vacuolar protein sorting-associated protein 45 homolog OS=Momordica charantia OX... [more]
A0A2H5NIE23.7e-0653.73Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_047540 PE=3 SV=1[more]
A0A3L6QCQ64.8e-0664.58Uncharacterized protein OS=Panicum miliaceum OX=4540 GN=C2845_PM12G09440 PE=3 SV... [more]
BLAST of Spg016329 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G77140.11.5e-0759.57vacuolar protein sorting 45 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg016329.1Spg016329.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0009846 pollen germination
biological_process GO:0030307 positive regulation of cell growth
biological_process GO:2000012 regulation of auxin polar transport
biological_process GO:2000067 regulation of root morphogenesis
biological_process GO:0031338 regulation of vesicle fusion
cellular_component GO:0005769 early endosome
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0009705 plant-type vacuole membrane
cellular_component GO:0031201 SNARE complex
cellular_component GO:0005802 trans-Golgi network