Spg016276 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg016276
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Transcription initiation factor IIA subunit 2
Location	scaffold9: 41904203 .. 41906120 (+)
RNA-Seq Expression	Spg016276
Synteny	Spg016276

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTTTCTGTGCTCTTCGAGGGAATTGCTTTCGTACTTTGTTGGCGGGAAAGGTCGCCTAAGAAAATCGGTCAAATCTTTGACTTTATTACTCGGTACCTAACCGTTTCTATTTTGGGCTGGGCCGAAATAGGGTTTTAATGGGCTCGAGAACAAACTGGGCCTTCAAATCATAGGCTTAACGGCCCATTTTACTTTTTGAGCCCAAAATAAGAAACGAAGTCGCCTCGCTAGGGGCAAAATCGTCATTTCGACGAGTTTCTATTCCGTCGCTTGGCTGCTATATATACCCTCATCTACAAAATCTAGGGTATAAAAAGCCCCAAATTTCTTCGCTCGCGAAAAGCTTTGGAGCTAACGTTAACCCAGTTAGAATCAAGAAACGAGAAGAATCACAAACTCACCAACAATCTGTAGCTTCAATTCCTTCCTTGTACTCTCTCTTTATTATTATTATTAATTTTCATTCCTTTTCGAATTGATCTCTCGCTTTAATTTCGAAGATTTTGCCAGCTTTCTCGAATTTTGACGCTATGTTCCAAATTTTTTTGTAGTTTTATCAATTCTGGATGTGTATTTTTGAACTAAATTTGATATCTTAGCTAAAGAACTTCCATATTTAGCAGATCTTGTTTTTCGAAGAGGAATGGCAACTTTTGAACTCTATCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCTGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGGTACAGCTAAAGCTGGTTTGGAGAGATGTGTTTATGTGTATATTGTGGATTTGTGTTCGGAATTAAGGTCTTGTTTGATTTAGTTTCCTACCGCTGTTGGCTTTTTGCAGTCCATGACCGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGTATCTATGTTCGGCTTATGAATTTGACGAATCTCTGAATGTCAGAGATTTATGTTGCTAAATAAAGTCAACATTATAATCTTGAAACGTGTTTTTACTGATAGGAGGAATTGGTTGTGTTTTCCTGTTCTGAGATTGCTCTGTTTGTGCTCTAGTACACGTCTCGTCTTGAGCCAAATTGTTTTGTCAGTAAAACATACGTGGAATGTATAGTAGAATATTTTCACATGGTCTTGTGGTTGCCCAAATGGACAGCATAGGAACATTTGTATTTGAAAGTTGGAAGTTTCGTTTCTGGAAGTTTTATTGATACTAAAATAGATTAGGTTACCTGTGTTCATTCCGTTCCTCGTTTTTTCTCCATTGATTCTTGAAACATTTACCAGCCGTCTATAAAATATCATACCTTGAATATGTTTCTCTGGAATAATCTTCATAATTGATCTGTGTTTTTGGAATCTGGGGATGAAGTAATCTTGTATTAGGGATGTGGCTTTGCTGTAATATCTGGTTCTACAATGAGTCTTAATGATTCCCTTACTCTTGCTTTCAAGTTATATATTCAATCCGATGGCTGTTGGATTTGTTATGATACTTAGTTGAAAGTTCATTGTACATAGATTGTAGAACTATTTCTTTGAAAGAAATGATGAAATCACAATCACGCAGCAATATTTAACTGTTTTTTGATGTCGTCTTCCCAGCCATCACTTTTGACTCTTTCTTTCAGAAGACTAATCGATTTGTTTTTACTTTCGACATACTGCCAAGTGAATTAATTTTATAAGACTACTATGGTGATTTCTGAACCCCTTGGTCCTCCTACTGTTTTGCAACAGGGACATTTGCACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCAACATTTAAGAACGAGGATTCCCAAGAGACTGTTGGAAGAATTAAAATAGTAGCATGTGACTCGAAGTTACTCTCACAATGA

mRNA sequence

ATGAGCTTTCTGTGCTCTTCGAGGGAATTGCTTTCGTACTTTGTTGGCGGGAAAGGTCGCCTAAGAAAATCGGTCAAATCTTTGACTTTATTACTCGATCTTGTTTTTCGAAGAGGAATGGCAACTTTTGAACTCTATCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCTGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGTCCATGACCGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGTACACGTCTCGTCTTGAGCCAAATTGTTTTACTACTATGGTGATTTCTGAACCCCTTGGTCCTCCTACTGTTTTGCAACAGGGACATTTGCACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCAACATTTAAGAACGAGGATTCCCAAGAGACTGTTGGAAGAATTAAAATAGTAGCATGTGACTCGAAGTTACTCTCACAATGA

Coding sequence (CDS)

ATGAGCTTTCTGTGCTCTTCGAGGGAATTGCTTTCGTACTTTGTTGGCGGGAAAGGTCGCCTAAGAAAATCGGTCAAATCTTTGACTTTATTACTCGATCTTGTTTTTCGAAGAGGAATGGCAACTTTTGAACTCTATCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCTGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGTCCATGACCGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGTACACGTCTCGTCTTGAGCCAAATTGTTTTACTACTATGGTGATTTCTGAACCCCTTGGTCCTCCTACTGTTTTGCAACAGGGACATTTGCACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCAACATTTAAGAACGAGGATTCCCAAGAGACTGTTGGAAGAATTAAAATAGTAGCATGTGACTCGAAGTTACTCTCACAATGA

Protein sequence

MSFLCSSRELLSYFVGGKGRLRKSVKSLTLLLDLVFRRGMATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLSQ

Homology

[Close]

BLAST of Spg016276 vs. NCBI nr
Match: KAG6608125.1 (Transcription initiation factor IIA subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203.8 bits (517), Expect = 1.2e-48
Identity = 109/140 (77.86%), Postives = 112/140 (80.00%), Query Frame = 0


Query: 33  DLVFRRGMATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQV 92
           +LVFRR MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQV
Sbjct: 610 NLVFRRRMATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQV 669

Query: 93  KSKVSIKYTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVWTFILQDATFKNED 152
           KSKV+IK                           GHLHTYRFCDNVWTFILQDATFKNED
Sbjct: 670 KSKVTIK---------------------------GHLHTYRFCDNVWTFILQDATFKNED 722

Query: 153 SQETVGRIKIVACDSKLLSQ 173
           SQETVGRIKIVACDSKLL+Q
Sbjct: 730 SQETVGRIKIVACDSKLLTQ 722

[Close]

BLAST of Spg016276 vs. NCBI nr
Match: BBG95885.1 (transcription initiation factor IIA gamma chain / TFIIA-gamma [Prunus dulcis])

HSP 1 Score: 200.3 bits (508), Expect = 1.4e-47
Identity = 107/136 (78.68%), Postives = 114/136 (83.82%), Query Frame = 0


Query: 40  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 99
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 100 Y--TSRLEPNCFTTMVISEPLGPPTVLQ-QGHLHTYRFCDNVWTFILQDATFKNEDSQET 159
           Y   S         + +S   G   VL+ +GHLHTYRFCDNVWTFILQDA FKNEDSQE 
Sbjct: 61  YWVISNWSRFWLRNLEVSGMKGLICVLENEGHLHTYRFCDNVWTFILQDALFKNEDSQEN 120

Query: 160 VGRIKIVACDSKLLSQ 173
           VGR+KIVACDSKLL+Q
Sbjct: 121 VGRVKIVACDSKLLTQ 136

[Close]

BLAST of Spg016276 vs. NCBI nr
Match: KAF7817052.1 (transcription initiation factor IIA subunit 2 [Senna tora])

HSP 1 Score: 197.2 bits (500), Expect = 1.2e-46
Identity = 105/135 (77.78%), Postives = 112/135 (82.96%), Query Frame = 0


Query: 40  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 99
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPE+AIQVLVQFDKSMTEALE+ VKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETNVKSKVSIK 60

Query: 100 Y--TSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVWTFILQDATFKNEDSQETV 159
           +   SR+ P C T              ++GHLHTYRFCDNVWTFILQDA FKNEDSQE V
Sbjct: 61  FDLDSRI-PICIT-------------FKKGHLHTYRFCDNVWTFILQDALFKNEDSQENV 120

Query: 160 GRIKIVACDSKLLSQ 173
           GR+KIVACDSKLLSQ
Sbjct: 121 GRVKIVACDSKLLSQ 121

[Close]

BLAST of Spg016276 vs. NCBI nr
Match: KAG5052649.1 (hypothetical protein JHK87_004847 [Glycine soja])

HSP 1 Score: 196.4 bits (498), Expect = 2.0e-46
Identity = 106/142 (74.65%), Postives = 113/142 (79.58%), Query Frame = 0


Query: 33  DLVFRRGMATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQV 92
           D V +  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QV
Sbjct: 13  DRVSQAAMATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQV 72

Query: 93  KSKVSIKYTSRLEPNCFTTMVISEPLGPPT--VLQQGHLHTYRFCDNVWTFILQDATFKN 152
           KSKVSIK             +  E LG  +  +   GHLHTYRFCDNVWTFILQDA FKN
Sbjct: 73  KSKVSIK----------VAFLFVEMLGWKSFDLFLLGHLHTYRFCDNVWTFILQDALFKN 132

Query: 153 EDSQETVGRIKIVACDSKLLSQ 173
           EDSQE VGR+KIVACDSKLL+Q
Sbjct: 133 EDSQENVGRVKIVACDSKLLTQ 144

[Close]

BLAST of Spg016276 vs. NCBI nr
Match: XP_022936677.1 (transcription initiation factor IIA subunit 2 [Cucurbita moschata] >XP_022936678.1 transcription initiation factor IIA subunit 2 [Cucurbita moschata] >XP_022975864.1 transcription initiation factor IIA subunit 2 [Cucurbita maxima] >XP_023536591.1 transcription initiation factor IIA subunit 2 [Cucurbita pepo subsp. pepo] >XP_023536592.1 transcription initiation factor IIA subunit 2 [Cucurbita pepo subsp. pepo] >KAG7024584.1 Transcription initiation factor IIA subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 196.1 bits (497), Expect = 2.6e-46
Identity = 105/133 (78.95%), Postives = 106/133 (79.70%), Query Frame = 0


Query: 40  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 99
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 100 YTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVWTFILQDATFKNEDSQETVGR 159
                                      GHLHTYRFCDNVWTFILQDATFKNEDSQETVGR
Sbjct: 61  ---------------------------GHLHTYRFCDNVWTFILQDATFKNEDSQETVGR 106

Query: 160 IKIVACDSKLLSQ 173
           IKIVACDSKLL+Q
Sbjct: 121 IKIVACDSKLLTQ 106

[Close]

BLAST of Spg016276 vs. ExPASy Swiss-Prot
Match: Q39236 (Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana OX=3702 GN=TFIIA-S PE=3 SV=2)

HSP 1 Score: 181.0 bits (458), Expect = 1.1e-44
Identity = 96/133 (72.18%), Postives = 102/133 (76.69%), Query Frame = 0


Query: 40  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 99
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 100 YTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVWTFILQDATFKNEDSQETVGR 159
                                      GHLHTYRFCDNVWTFILQDA FK++D QE V R
Sbjct: 61  ---------------------------GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSR 106

Query: 160 IKIVACDSKLLSQ 173
           +KIVACDSKLL+Q
Sbjct: 121 VKIVACDSKLLTQ 106

[Close]

BLAST of Spg016276 vs. ExPASy Swiss-Prot
Match: A2XZI2 (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=39946 GN=TFIIAy PE=3 SV=2)

HSP 1 Score: 177.9 bits (450), Expect = 9.5e-44
Identity = 94/133 (70.68%), Postives = 102/133 (76.69%), Query Frame = 0


Query: 40  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 99
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 100 YTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVWTFILQDATFKNEDSQETVGR 159
                                      GHLHTYRFCDNVWTFIL +A+FKNE++ E VG+
Sbjct: 61  ---------------------------GHLHTYRFCDNVWTFILTEASFKNEETTEQVGK 106

Query: 160 IKIVACDSKLLSQ 173
           +KIVACDSKLLSQ
Sbjct: 121 VKIVACDSKLLSQ 106

[Close]

BLAST of Spg016276 vs. ExPASy Swiss-Prot
Match: Q0DLD3 (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TFIIAy PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 9.5e-44
Identity = 94/133 (70.68%), Postives = 102/133 (76.69%), Query Frame = 0


Query: 40  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 99
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 100 YTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVWTFILQDATFKNEDSQETVGR 159
                                      GHLHTYRFCDNVWTFIL +A+FKNE++ E VG+
Sbjct: 61  ---------------------------GHLHTYRFCDNVWTFILTEASFKNEETTEQVGK 106

Query: 160 IKIVACDSKLLSQ 173
           +KIVACDSKLLSQ
Sbjct: 121 VKIVACDSKLLSQ 106

[Close]

BLAST of Spg016276 vs. ExPASy Swiss-Prot
Match: O74948 (Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=toa2 PE=3 SV=2)

HSP 1 Score: 104.8 bits (260), Expect = 1.0e-21
Identity = 52/126 (41.27%), Postives = 79/126 (62.70%), Query Frame = 0


Query: 43  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYTS 102
           +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMTEAL  +V+S+++ K   
Sbjct: 5   YELYRRSSIGISLTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKVRSRLTFK--- 64

Query: 103 RLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI 162
                                   GHL TYRFCD VWTFI+++ +F+ ++   T  +I+I
Sbjct: 65  ------------------------GHLDTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRI 103

Query: 163 VACDSK 169
           VAC ++
Sbjct: 125 VACATR 103

[Close]

BLAST of Spg016276 vs. ExPASy Swiss-Prot
Match: B7Q1Q9 (Transcription initiation factor IIA subunit 2 OS=Ixodes scapularis OX=6945 GN=IscW_ISCW010050 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.1e-21
Identity = 50/127 (39.37%), Postives = 76/127 (59.84%), Query Frame = 0


Query: 42  TFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKYT 101
           +++LYR +T+G  L E+LDE++Q G ++P LA++VL+QFDK++  AL ++VK++++ K  
Sbjct: 2   SYQLYRNTTLGNTLQESLDELIQCGQITPHLALKVLLQFDKAINNALANRVKTRLTFK-- 61

Query: 102 SRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIK 161
                                    GHL TYRFCDNVWTF+L+D  F+         ++K
Sbjct: 62  ------------------------AGHLSTYRFCDNVWTFVLKDVEFREVQELVKADKVK 102

Query: 162 IVACDSK 169
           IVACD K
Sbjct: 122 IVACDGK 102

[Close]

BLAST of Spg016276 vs. ExPASy TrEMBL
Match: A0A4Y1QVK2 (Transcription initiation factor IIA subunit 2 OS=Prunus dulcis OX=3755 GN=Prudu_004544 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 6.6e-48
Identity = 107/136 (78.68%), Postives = 114/136 (83.82%), Query Frame = 0


Query: 40  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 99
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 100 Y--TSRLEPNCFTTMVISEPLGPPTVLQ-QGHLHTYRFCDNVWTFILQDATFKNEDSQET 159
           Y   S         + +S   G   VL+ +GHLHTYRFCDNVWTFILQDA FKNEDSQE 
Sbjct: 61  YWVISNWSRFWLRNLEVSGMKGLICVLENEGHLHTYRFCDNVWTFILQDALFKNEDSQEN 120

Query: 160 VGRIKIVACDSKLLSQ 173
           VGR+KIVACDSKLL+Q
Sbjct: 121 VGRVKIVACDSKLLTQ 136

[Close]

BLAST of Spg016276 vs. ExPASy TrEMBL
Match: A0A6J1F935 (Transcription initiation factor IIA subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111443199 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 1.2e-46
Identity = 105/133 (78.95%), Postives = 106/133 (79.70%), Query Frame = 0


Query: 40  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 99
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 100 YTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVWTFILQDATFKNEDSQETVGR 159
                                      GHLHTYRFCDNVWTFILQDATFKNEDSQETVGR
Sbjct: 61  ---------------------------GHLHTYRFCDNVWTFILQDATFKNEDSQETVGR 106

Query: 160 IKIVACDSKLLSQ 173
           IKIVACDSKLL+Q
Sbjct: 121 IKIVACDSKLLTQ 106

[Close]

BLAST of Spg016276 vs. ExPASy TrEMBL
Match: A0A6J1ILT9 (Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111476437 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 1.2e-46
Identity = 105/133 (78.95%), Postives = 106/133 (79.70%), Query Frame = 0


Query: 40  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 99
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 100 YTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVWTFILQDATFKNEDSQETVGR 159
                                      GHLHTYRFCDNVWTFILQDATFKNEDSQETVGR
Sbjct: 61  ---------------------------GHLHTYRFCDNVWTFILQDATFKNEDSQETVGR 106

Query: 160 IKIVACDSKLLSQ 173
           IKIVACDSKLL+Q
Sbjct: 121 IKIVACDSKLLTQ 106

[Close]

BLAST of Spg016276 vs. ExPASy TrEMBL
Match: A0A6J1BWA2 (Transcription initiation factor IIA subunit 2 OS=Momordica charantia OX=3673 GN=LOC111006284 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 2.1e-46
Identity = 105/133 (78.95%), Postives = 105/133 (78.95%), Query Frame = 0


Query: 40  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 99
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 100 YTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVWTFILQDATFKNEDSQETVGR 159
                                      GHLHTYRFCDNVWTFILQDATFKNEDSQE VGR
Sbjct: 61  ---------------------------GHLHTYRFCDNVWTFILQDATFKNEDSQENVGR 106

Query: 160 IKIVACDSKLLSQ 173
           IKIVACDSKLLSQ
Sbjct: 121 IKIVACDSKLLSQ 106

[Close]

BLAST of Spg016276 vs. ExPASy TrEMBL
Match: A0A6J1J100 (Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111480333 PE=3 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.8e-46
Identity = 104/133 (78.20%), Postives = 106/133 (79.70%), Query Frame = 0


Query: 40  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 99
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 100 YTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVWTFILQDATFKNEDSQETVGR 159
                                      GHLHTYRFCDNVWTFILQDATFKNEDSQETVGR
Sbjct: 61  ---------------------------GHLHTYRFCDNVWTFILQDATFKNEDSQETVGR 106

Query: 160 IKIVACDSKLLSQ 173
           IKIVACDSKLL+Q
Sbjct: 121 IKIVACDSKLLTQ 106

[Close]

BLAST of Spg016276 vs. TAIR 10
Match: AT4G24440.1 (transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) )

HSP 1 Score: 181.0 bits (458), Expect = 8.0e-46
Identity = 96/133 (72.18%), Postives = 102/133 (76.69%), Query Frame = 0


Query: 40  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 99
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 100 YTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVWTFILQDATFKNEDSQETVGR 159
                                      GHLHTYRFCDNVWTFILQDA FK++D QE V R
Sbjct: 61  ---------------------------GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSR 106

Query: 160 IKIVACDSKLLSQ 173
           +KIVACDSKLL+Q
Sbjct: 121 VKIVACDSKLLTQ 106

[Close]

BLAST of Spg016276 vs. TAIR 10
Match: AT4G24440.2 (transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) )

HSP 1 Score: 181.0 bits (458), Expect = 8.0e-46
Identity = 96/133 (72.18%), Postives = 102/133 (76.69%), Query Frame = 0


Query: 40  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 99
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 100 YTSRLEPNCFTTMVISEPLGPPTVLQQGHLHTYRFCDNVWTFILQDATFKNEDSQETVGR 159
                                      GHLHTYRFCDNVWTFILQDA FK++D QE V R
Sbjct: 61  ---------------------------GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSR 106

Query: 160 IKIVACDSKLLSQ 173
           +KIVACDSKLL+Q
Sbjct: 121 VKIVACDSKLLTQ 106

The following BLAST results are available for this feature:

BLAST of Spg016276 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608125.1	1.2e-48	77.86	Transcription initiation factor IIA subunit 2, partial [Cucurbita argyrosperma s...	[more]
BBG95885.1	1.4e-47	78.68	transcription initiation factor IIA gamma chain / TFIIA-gamma [Prunus dulcis]	[more]
KAF7817052.1	1.2e-46	77.78	transcription initiation factor IIA subunit 2 [Senna tora]	[more]
KAG5052649.1	2.0e-46	74.65	hypothetical protein JHK87_004847 [Glycine soja]	[more]
XP_022936677.1	2.6e-46	78.95	transcription initiation factor IIA subunit 2 [Cucurbita moschata] >XP_022936678...	[more]

BLAST of Spg016276 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39236	1.1e-44	72.18	Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana OX=3702 GN...	[more]
A2XZI2	9.5e-44	70.68	Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=3...	[more]
Q0DLD3	9.5e-44	70.68	Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX...	[more]
O74948	1.0e-21	41.27	Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (stra...	[more]
B7Q1Q9	5.1e-21	39.37	Transcription initiation factor IIA subunit 2 OS=Ixodes scapularis OX=6945 GN=Is...	[more]

BLAST of Spg016276 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Y1QVK2	6.6e-48	78.68	Transcription initiation factor IIA subunit 2 OS=Prunus dulcis OX=3755 GN=Prudu_...	[more]
A0A6J1F935	1.2e-46	78.95	Transcription initiation factor IIA subunit 2 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1ILT9	1.2e-46	78.95	Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1BWA2	2.1e-46	78.95	Transcription initiation factor IIA subunit 2 OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1J100	2.8e-46	78.20	Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of Spg016276 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24440.1	8.0e-46	72.18	transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)	[more]
AT4G24440.2	8.0e-46	72.18	transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015872	Transcription initiation factor IIA, gamma subunit, N-terminal	PFAM	PF02268	TFIIA_gamma_N	coord: 43..88 e-value: 3.1E-22 score: 78.4
IPR015872	Transcription initiation factor IIA, gamma subunit, N-terminal	CDD	cd10145	TFIIA_gamma_N	coord: 43..88 e-value: 5.20213E-22 score: 81.8431
IPR015871	Transcription initiation factor IIA, gamma subunit, C-terminal	PFAM	PF02751	TFIIA_gamma_C	coord: 127..167 e-value: 1.0E-20 score: 73.6
IPR015871	Transcription initiation factor IIA, gamma subunit, C-terminal	CDD	cd10014	TFIIA_gamma_C	coord: 126..168 e-value: 1.87453E-21 score: 80.3695
IPR009088	Transcription factor IIA, beta-barrel	GENE3D	2.30.18.10		coord: 124..171 e-value: 4.5E-20 score: 73.2
IPR009088	Transcription factor IIA, beta-barrel	SUPERFAMILY	50784	Transcription factor IIA (TFIIA), beta-barrel domain	coord: 126..168
IPR009083	Transcription factor IIA, alpha-helical domain	GENE3D	1.10.287.190		coord: 42..93 e-value: 9.0E-24 score: 85.1
IPR003194	Transcription initiation factor IIA, gamma subunit	PANTHER	PTHR10966	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2	coord: 123..172 coord: 34..103
None	No IPR available	PANTHER	PTHR10966:SF8	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2	coord: 123..172 coord: 34..103
None	No IPR available	SUPERFAMILY	47396	Transcription factor IIA (TFIIA), alpha-helical domain	coord: 43..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg016276.1	Spg016276.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051123	RNA polymerase II preinitiation complex assembly
biological_process	GO:0006413	translational initiation
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0005672	transcription factor TFIIA complex
molecular_function	GO:0016251	RNA polymerase II general transcription initiation factor activity
molecular_function	GO:0017025	TBP-class protein binding
molecular_function	GO:0003743	translation initiation factor activity