Spg016235 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg016235
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionBet1-like protein
Locationscaffold9: 42223128 .. 42227016 (+)
RNA-Seq ExpressionSpg016235
SyntenySpg016235
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCTAGGTGGTTTGCGATAGATACCCTACTTCAAGGAGGTTCCTTATGTCAAGATCCTCTTTCCTTGGAGCACTTGATGGAAACCTTTCTTAGAGAAGAGGGTTCATTTCTTTTGACATACGTTGAACTTTGTCTAAGGAGGTTCCTTTGTCAGACAGATCGGAGAGGAGCAAAGGGAGGAAAGGGAAATATTCTGTCCTCTACTTGCCTTTTCGTTTTTTGGGGACAAAGGAGGGAATACTATAGGTTAGCTAGCAGTCAGAAGGCATACGTTTTTAAAGTCATAAGTTCAATCCTTGGTCACTGTCTTCCTCTTTTACCCTTTCTTAAGCTCCAGAAATGTCTGACGGTTGCTTTAAATACATCTAGGGTTAGACCATAACGATTAGCCATCAAGTGCCTAGACATTGAACATGGCATTAAGAAATTTTTGTGCTACCATTTTCCAAAGCTCTGGTGCCAACATGCTGCTATTTTGAGCCCTACAACTTGGATTCATTCCTCTTTTGGTGCACGAGCGTACATGAGACTGGGCTTCAGGAAGACCATCTGGGCACCAGAAGTGGTGCAACTACAAGTCACTATTTTCTTATATTCCTGTAAACTAAACAAGAATACACAAATTAAACTGATAGAAATCTTTAGAACTGCCTATAGAAAGAAATCTAGTTGGTCAGTGTAAATCTCACTTTTGGTACTTTTAACATGTTATTTTTTTGTGTTTAAAATTATGATATATTGCATATCATAAGGAAATTAAAAGGTTTTTAAGTATGAATTCAGAGACTTGGAGAATTTTCGGGAGATTGTTATGTTTTTGGCTTCACATTGGTCTACCCTTGCAAAAGTCGTAAAAGTTAATATAATTCTTTTTTATGAATGCAAACAAGAGTCATTTATTCTAACCTCCTTTAGTTTGTGTTTGGTGGAACGAGTCATTTATTCTAATCTCCTTTAGTTTGTGTTTGGTGGATAGCTTATATACCCTTCTGTATTCGTTCCCTCCTAATGAAATGGTTTCTTATCTAAAAACAGAGAATATGATATGCATTGCGTCACATTGATTCATCGTTGGAATTGTTTAAGTGTTTAAATTTGTTATTAAATATATTAATTGAAGTTAGTTTGGACAATAAGTATCTTGTGTGACTTAAATTTCCCTTTTAGATCCTCTTTAGGATGTTCCTCCTTTTCATATTTTACAGAAGTAGACGCTGGATTATAATTGCTTGTTTCAACATGTGTTTGTAGAATATTATGGCCTACTTTCTTATAATCTTATTCTCCCTCTCAGCGAGTTTCATAATATGTTGGACCATTAGTCATAGTATCCTTCTAATAAGTGTTTATTTACAAATGTGTGAAAAGTATCACGTTGGAACTTTTTCTCAATATCTCACATAACATAGTCTAGGAACTCATTTCATAATCTTGATAAATAGAAAATTTTATTTTTATATTTTGAGGCTGCAATTGAGCCACAACAATTTCTCGCTGGCTTTGATTGATGCTTGAGCTTTTACTTGGTTTCCATTAGGCTATAGAAATATTGAAAGAGAAAAGGAGTAGGAAAAATATTAGTCAAGATTGAGACGACGTTGTGTAGGGCTTGATAATTGAGACACCGAACAAGCGATTTAGTGGATAGCTCAAAAGGTTCTTGAGAGTATATTCTTTAACTCATCCCTTGGGTCAATATAGAATATCAATATACTACGAGGTTCATCTTTGACCACCTGATTTCTAGAGCACCCACCATTGTACTTGAGAGCTTGACAAGCCATCTGAAAAATAAAACATCCCTCTTACCAAAAAAAATAAAAAAAAATAAATAAATCATCCTAAGAATAAAACTTTTACATGGTTCCTTGTGTTGAACGGTCTTGGCACAGCTGATGGAAATGAAAAGGGGGGATTGCTGATGTTATGTGTTGTATGCCACCAAAAATCTGGATGATCAAAATCGTCTGCCCTGCACCCACCCCTCAAGTACATACTTCAACAGAAATTGAACAAGGGTAGATTGATATGTATCAAAACAAATAACAATGGAGTGAGGGGCATCTTTTCTTCACCTGCCAGTGTGCTTCTTAATTTATTATTATTATTATTATTGAGAAAATTTTGCTTCTAAACGTTGAGCTAAGCTTTCTAGTGAGTTTGGTTTGAGCTGGTGTGTGCCTGATTGTATGACGGCCAATGTCGAGCGAAGAGAAACACATTTCATTGATAAATGAAATAAAGGAGAAAAACTCCAAACACCTAAAGGTGAATTACAAGAAAACTTTCCAATTCGAAATCAAATAAGACAAACTGTAATCAGAAAACGGGTGTTTACATTTACACCAGTATAAAGCATGAAAAATGATTAAATCCAAGAAATTAGAAAACGAAGAAAAAGAATCCCTGAAAATTCTGCCATTCCTTTCTCCCAATAAGAACCAGAGAAAGGCCCGGTTTGATAGCAAGCCACAAGATCTTCTTTTCTCCATGAAAAGGGTGACCCACAAAGATAAGAGCAAGGGCATCCTGAATATTGTTGGGTAAAGCTGTGGACCAACCAAAAGAACAGATTATCTACGAAATGTCGAGCAGCTCCTTTTCTTTCATATTATCTACGAAAGCTCCTCTTGTTTCTTATTAAGGAAAAAAAAAAACAGATTGTGCATTGTCTTCTGGTCCCAAAGTCAAATGTGCAGTTATCGGCTACTTAAATCACAGACACGTTAATCTGAGAAAGTAACTTTATACTGACAACAGGTCGGCAATTTCTCTGTTCAAAGTGCAAAACTGGTAGGATCTTCATTTAGCATAGCAGAACCTGCCCCGCAACCTATGGTTTCTTGTGATTCTTCACAGTTTCATCTTATTTTTAATCTTGTTGAGATCATGTACAGATTATATATGCCATTCGTTTACTTAATTCCAGATCCAATTTTTGATCCTTTCTTTTTGGTACTTGGTGTAATTGTCCTGGTGCAGATTGCTCAAGATATCGGGACAGAAGCAAAGTCCCAGCAAGATTTTCTAGATCAGTTGGTATGCAATTTTTTTCTTAATAGTATTCATAGTTGTTAAATTTCCACTTGTTTTTTGTATATTGATTTTAATTCTTGGTTTTTACTTGTTGATGTTCTTGCTTGTGAGAAGAAAAATCTTTGGGTCCTGATTACTTGTGAAAATGGAAATGACAGATAATTGGAATAAAATAAATCGGACTGGAAAAATGATAGAATGAGAATAAAAATTTTAACATTGCGTATATTAAAATTATTTTGGAACAAGGATTAGAGTATAAATGATGATCGTTTCTATTGTTCCATAAATTTATCAAATAATGAGGAACGGTTCCAATTTGTTGTTCCATCCAATTAATTGATTCCTCTTGTGGAAATACATCTTGCCTCATTTTTTTTAATCCTCATTTCAATTAGAGAAATAAAACAACGGTTTTCCTCATAACCTCAGACTTAAATGCATAGAGCTCTATCAAATTAAAAGAAATTAACTAAAGAAAATCAGTCTCATTTCGATATGTAATGGTTCAAAATGCATATAATCCCGTATACCTTTTACACTTCTGACAGATTCGAACTTTTGTTTTCTGTCTTGGTGTAGCAAATGACATTGATCAAAGCTCAAGCAGGAGTAAAGAACAACGTAAGAAGATTGAACAAAAAAATCATACAGAACGGATCAAATCATGTCGTCCAGGTCGTCGTATTTGCATTGATCTGTTTCTTTATAGTATATATGTGGTCAAAGATATCCAGAAAATGAATGCTTTCCTCACTTTCCTCATTATGAATGGAATACCAGTTGCTGGCCTGCGAAGAGGAAAAGAAACAGAAATGATGTTTAATATTATCACTGTCACCCATTAG

mRNA sequence

ATGGGAGCTAGGTGGTTTGCGATAGATACCCTACTTCAAGGAGGTTCCTTATGTCAAGATCCTCTTTCCTTGGAGCACTTGATGGAAACCTTTCTTAGAGAAGAGGGTTCATTTCTTTTGACATACGTTGAACTTTGTCTAAGGAGGTTCCTTTGTCAGACAGATCGGAGAGGAGCAAAGGGAGGAAAGGGAAATATTCTGTCCTCTACTTGCCTTTTCGTTTTTTGGGGACAAAGGAGGGAATACTATAGGTTAGCTAGCAGTCAGAAGGCATACGTTTTTAAAGTCATAAGTTCAATCCTTGGTCACTGTCTTCCTCTTTTACCCTTTCTTAAGCTCCAGAAATGTCTGACGGTTGCTTTAAATACATCTAGGGTCGGCAATTTCTCTGTTCAAAGTGCAAAACTGATTGCTCAAGATATCGGGACAGAAGCAAAGTCCCAGCAAGATTTTCTAGATCAGTTGATTCGAACTTTTGTTTTCTGTCTTGGTGTAGCAAATGACATTGATCAAAGCTCAAGCAGGAGTAAAGAACAACGTAAGAAGATTGAACAAAAAAATCATACAGAACGGATCAAATCATGTCGTCCAGGTCGTCGTATTTGCATTGATCTGTTTCTTTATAGTATATATGTGGTCAAAGATATCCAGAAAATGAATGCTTTCCTCACTTTCCTCATTATGAATGGAATACCAGTTGCTGGCCTGCGAAGAGGAAAAGAAACAGAAATGATGTTTAATATTATCACTGTCACCCATTAG

Coding sequence (CDS)

ATGGGAGCTAGGTGGTTTGCGATAGATACCCTACTTCAAGGAGGTTCCTTATGTCAAGATCCTCTTTCCTTGGAGCACTTGATGGAAACCTTTCTTAGAGAAGAGGGTTCATTTCTTTTGACATACGTTGAACTTTGTCTAAGGAGGTTCCTTTGTCAGACAGATCGGAGAGGAGCAAAGGGAGGAAAGGGAAATATTCTGTCCTCTACTTGCCTTTTCGTTTTTTGGGGACAAAGGAGGGAATACTATAGGTTAGCTAGCAGTCAGAAGGCATACGTTTTTAAAGTCATAAGTTCAATCCTTGGTCACTGTCTTCCTCTTTTACCCTTTCTTAAGCTCCAGAAATGTCTGACGGTTGCTTTAAATACATCTAGGGTCGGCAATTTCTCTGTTCAAAGTGCAAAACTGATTGCTCAAGATATCGGGACAGAAGCAAAGTCCCAGCAAGATTTTCTAGATCAGTTGATTCGAACTTTTGTTTTCTGTCTTGGTGTAGCAAATGACATTGATCAAAGCTCAAGCAGGAGTAAAGAACAACGTAAGAAGATTGAACAAAAAAATCATACAGAACGGATCAAATCATGTCGTCCAGGTCGTCGTATTTGCATTGATCTGTTTCTTTATAGTATATATGTGGTCAAAGATATCCAGAAAATGAATGCTTTCCTCACTTTCCTCATTATGAATGGAATACCAGTTGCTGGCCTGCGAAGAGGAAAAGAAACAGAAATGATGTTTAATATTATCACTGTCACCCATTAG

Protein sequence

MGARWFAIDTLLQGGSLCQDPLSLEHLMETFLREEGSFLLTYVELCLRRFLCQTDRRGAKGGKGNILSSTCLFVFWGQRREYYRLASSQKAYVFKVISSILGHCLPLLPFLKLQKCLTVALNTSRVGNFSVQSAKLIAQDIGTEAKSQQDFLDQLIRTFVFCLGVANDIDQSSSRSKEQRKKIEQKNHTERIKSCRPGRRICIDLFLYSIYVVKDIQKMNAFLTFLIMNGIPVAGLRRGKETEMMFNIITVTH
Homology
[Close]
BLAST of Spg016235 vs. NCBI nr
Match: KGN60384.2 (hypothetical protein Csa_001559 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 7.2e-29
Identity = 79/115 (68.70%), Postives = 92/115 (80.00%), Query Frame = 0 

Query: 131 VQSAKLIAQDIGTEAKSQQDFLDQLIRTFV-FCLGVANDIDQSSSRSKEQRKKIEQKNHT 190
           V+  + IAQDIGTEAKSQQDFLDQLI+T V FCL  ANDID+SSS  +EQ KKIEQK+HT
Sbjct: 59  VKRLRNIAQDIGTEAKSQQDFLDQLIQTSVLFCLVPANDIDKSSSGGEEQCKKIEQKDHT 118

Query: 191 ERIKSCRPGRRICIDLFLYSIYVVKDIQKMNAFLTFLI--MNGIPVAGLRRGKET 243
           E IKSCRPGRRICIDLFLYSI+VV+++QKMN F  F +   N   +AG  +GKET
Sbjct: 119 EWIKSCRPGRRICIDLFLYSIHVVENVQKMNVFSHFALYEWNTSFLAG-EKGKET 172

[Close]
BLAST of Spg016235 vs. NCBI nr
Match: EXB75572.1 (Bet1-like protein [Morus notabilis])

HSP 1 Score: 63.5 bits (153), Expect = 2.9e-06
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 0 

Query: 131 VQSAKLIAQDIGTEAKSQQDFLDQLIRTFVFCLGVANDIDQSSSRSKEQRKKIEQKNHTE 190
           V+  + +A++IGTEA+ Q DFL+QL           ND DQSSSR KEQRK+IEQK+H+E
Sbjct: 49  VRRLRNVAEEIGTEARFQNDFLNQL---------ATNDTDQSSSRGKEQRKEIEQKHHSE 106

Query: 191 RIKSCRP 198
            ++ C P
Sbjct: 109 WLEQCCP 106

[Close]
BLAST of Spg016235 vs. NCBI nr
Match: KAG5621173.1 (hypothetical protein H5410_006391 [Solanum commersonii])

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-05
Identity = 39/99 (39.39%), Postives = 54/99 (54.55%), Query Frame = 0 

Query: 137 IAQDIGTEAKSQQDFLDQL-----------IRTFVFCLGVANDIDQSSSRSKEQRKKIEQ 196
           +AQ+I +EAK Q DF++QL              F+  +   ND+DQSSSRSKEQ +K+EQ
Sbjct: 96  VAQEIESEAKYQNDFINQLRYWTININAKSDDVFLRAIRSTNDVDQSSSRSKEQHEKVEQ 155

Query: 197 KNHTERIKSCRPGRRICIDLFLYSIYVVKDIQKMNAFLT 225
           + H  RIK C      C  L L  I V +   ++ A L+
Sbjct: 156 EYHPGRIKPCDACGSFCTILLLCDILVGQVFTEIRATLS 194

[Close]
BLAST of Spg016235 vs. NCBI nr
Match: KAF3605451.1 (hypothetical protein DY000_02047307 [Brassica cretica])

HSP 1 Score: 60.1 bits (144), Expect = 3.2e-05
Identity = 33/84 (39.29%), Postives = 56/84 (66.67%), Query Frame = 0 

Query: 137 IAQDIGTEAKSQQDFLDQLIRTFVFCLGVANDIDQSSSRSKEQRKKIEQKNHTERIKSCR 196
           IA++IG+EA+ Q++FLD L+        VA+D+D+S+SR KE+ K+ E ++HT+  +   
Sbjct: 71  IAKEIGSEAQFQKNFLDDLLLP-----KVASDVDESTSRGKEKHKEAELEHHTQWKQPRH 130

Query: 197 PGRRICIDLFLYSIYVVKDIQKMN 221
                   L LYS++V++D+QKM+
Sbjct: 131 ARGSFRAPLLLYSLHVIQDVQKMS 149

[Close]
BLAST of Spg016235 vs. ExPASy TrEMBL
Match: A0A2N9I9Y8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50628 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.7e-07
Identity = 39/98 (39.80%), Postives = 60/98 (61.22%), Query Frame = 0 

Query: 131 VQSAKLIAQDIGTEAKSQQDFLDQLIRTFVFC---------LGVANDIDQSSSRSKEQRK 190
           V+  + +A++IGTEA+ Q+DFL+QL+  +V             +AND  QSSSR +EQ K
Sbjct: 57  VKKLRHVAEEIGTEARFQKDFLNQLVNHYVQIPCFTHAHTHTHMANDSTQSSSRGEEQCK 116

Query: 191 KIEQKNHTERIKSCRPGRRICIDLFLYSIYVVKDIQKM 220
           +IEQ++H   +K  R     C +LFL  + + +D+QKM
Sbjct: 117 EIEQEHHPAWLKPYRSSGCFCPNLFLCGLPLGQDVQKM 154

[Close]
BLAST of Spg016235 vs. ExPASy TrEMBL
Match: W9R802 (Bet1-like protein OS=Morus notabilis OX=981085 GN=L484_026044 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-06
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 0 

Query: 131 VQSAKLIAQDIGTEAKSQQDFLDQLIRTFVFCLGVANDIDQSSSRSKEQRKKIEQKNHTE 190
           V+  + +A++IGTEA+ Q DFL+QL           ND DQSSSR KEQRK+IEQK+H+E
Sbjct: 49  VRRLRNVAEEIGTEARFQNDFLNQL---------ATNDTDQSSSRGKEQRKEIEQKHHSE 106

Query: 191 RIKSCRP 198
            ++ C P
Sbjct: 109 WLEQCCP 106

[Close]
BLAST of Spg016235 vs. ExPASy TrEMBL
Match: A0A3N6RRY1 (Uncharacterized protein OS=Brassica cretica OX=69181 GN=DY000_00010718 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-05
Identity = 33/84 (39.29%), Postives = 56/84 (66.67%), Query Frame = 0 

Query: 137 IAQDIGTEAKSQQDFLDQLIRTFVFCLGVANDIDQSSSRSKEQRKKIEQKNHTERIKSCR 196
           IA++IG+EA+ Q++FLD L+        VA+D+D+S+SR KE+ K+ E ++HT+  +   
Sbjct: 71  IAKEIGSEAQFQKNFLDDLLLP-----KVASDVDESTSRGKEKHKEAELEHHTQWKQPRH 130

Query: 197 PGRRICIDLFLYSIYVVKDIQKMN 221
                   L LYS++V++D+QKM+
Sbjct: 131 ARGSFRAPLLLYSLHVIQDVQKMS 149

The following BLAST results are available for this feature:
BLAST of Spg016235 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60384.27.2e-2968.70hypothetical protein Csa_001559 [Cucumis sativus][more]
EXB75572.12.9e-0650.75Bet1-like protein [Morus notabilis][more]
KAG5621173.11.5e-0539.39hypothetical protein H5410_006391 [Solanum commersonii][more]
KAF3605451.13.2e-0539.29hypothetical protein DY000_02047307 [Brassica cretica][more]
BLAST of Spg016235 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg016235 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2N9I9Y83.7e-0739.80Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50628 PE=4 SV=1[more]
W9R8021.4e-0650.75Bet1-like protein OS=Morus notabilis OX=981085 GN=L484_026044 PE=4 SV=1[more]
A0A3N6RRY11.6e-0539.29Uncharacterized protein OS=Brassica cretica OX=69181 GN=DY000_00010718 PE=4 SV=1[more]
BLAST of Spg016235 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCDDcd15841SNARE_Qccoord: 130..185
e-value: 7.72412E-5
score: 37.538

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg016235.1Spg016235.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016020 membrane
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000976 transcription cis-regulatory region binding