Spg016230 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg016230
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein ROOT INITIATION DEFECTIVE 3
Location	scaffold9: 45665931 .. 45671887 (+)
RNA-Seq Expression	Spg016230
Synteny	Spg016230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCACGTGGTTGACTCCGGCTGCCCCTCCCACCTCGCCGCCGCCTCTCTCCGGTTCAGTGTCGTTGCCGGCGCCACCGTCTCTCTGCTGCTCAGTGCCGGCGTCGCCTTCTCCTTTCCCCTCGAACTTTAGCAGCGGGTTGCACGGTGTTTTTGCTCTCTTTTTACAGGTATTTTCCCATTCTTCAAATGAAACCGACTGACGGAAACAATTCAAGTGAGGGCTCTGTCTAATGAAAGAAAGTAGAAGTTACTTTGATTACTAGAAGAGATAGGACAATCTCTACATATTTATAATTGCAGATTATAGTTTGTTTTGATGAATTTTTAGCTTAAAATTGTTGTAGTGAAGTATATTACCCAATCCGCCATTGGTGTTTTGAATTTGCTGGAAATACAAACAGCCTATATGCTTTGTATAGTATATACTGATTTAAAAAATTCTAAACGAAAAAATTATTTAAGGTAAAAAAAAGTGGACAGAAAAGGGACGTAGATAAATACCTACGCAAAATTTTCAAGCAGCATTTGCTGATACACCCATTCAATCAACTTGTACTGTTTTATAACAAGAAGTGCATGGAGAATGGCATTTGATAAACCTCTCAACAACTTTCCTAGCCAAGCCTGCATCACCACAAGTACATGTTAATAACGTAAATGTCCTTGCAGTAACAGGGTACCCTTTCTCAGTCATCTCATCAACTAACCTCCATATAGCCTTGAACTTCTCACATTCAGCAAATATTTTCATGATCATATGATACGAGCTCGCCTCGTGTCTGTAATTCTCGACCTTACCAGACCACACGAAAAACTTGTACGGTTGTACCCCAATTTTGCACACAGAGTTTTGTTTAGAACATTTATACCTCAAAATCCCCCTCAGAACTTCCCTAACAAGAGCGCCTGAGACCTTTAGTTGCAGTTCATCCGAAGCCAATAATGTGTCAAATCCAGGACCATCCTATTTGAGAACCTCAAGAACTTTTTCAGCATCAGTTTTTGCATCCTCAAGCAAACCCATTTTCACCGACAAATTATCCCATCTACGACTCCCAAACTCACAAGAATCTGAATTTTCATCCGTAAAGTAATCAAGCTCTGATTTTTTCAACCCCTTCTTAAACGGTTCCACAACAGATACAGACTCAAAGCCATCATCACTACCAAATCTCCGATTCCAAATTGTTCGACGCAAAATAAAAGAAGTTGAAAATCTGCAGACTATTCGCGAACTTAGAGGCGGTGAAGACTTCATGATTGACACCCATTATCGCTAAAGACTCGCAATACTCAAGGAAATCAAGTAATCGAACAACAAAGCAAAAATGGACAAGTGGGAAACCGCCGAAGCGTTTGTTTTCCCAAATTGGGAGGCACCCATTTAACATGAACACCCCCAATCTTGAAATAAGTTACGAATCCAACAGAAAATTTCCATTTGAAAGATAATCTGACTTTTGAATTTCAATGTAGCATTAGAAAGTTTTTTAAGTTCGAATAAAACTTATCTGGGATTTGGCAATTTTGTCGAGATCTTCGAAGTTGAGGCTTCAAATCAAGCTCAGAGTTCGTTCTTCAGATTGAGGGTAATGAGTTAAGATCGTAGTTGAGTATAAGAGTTAAAATCCAATTCCTAATATCTCCATGGTTTAAGTTATGTCTATGCTCTTTAACCTGTTAATTATATAGTAAGCACACTTGTGAGAAAGGAAATAGAGATTGAATGATTCGTGTTGACTTGTAGTTGAATTGCACTCTAATTCTATCGTTCAAAAACAGGACGTGTAAATTTTAGTCGAGATCCTCTTATCCTAACTTGGTGTGGAGTTGTTCAGAGTCTACGCACCAGTTTAACATAATCCGTTGTATCTGTTGACTGCCACAAATATTCAAAGGAAATTGAAACTTAAGCCCTCTCTCAAGCTCTCAAGTTAGAATGGTGCTAGTGGTCGCTTCGTCCTCCATTGATTCGGGGATTGGTTGTTGGGACCTCCACACGGGTGCAGAACAACTACGTTACAAGTCTTGTGCTTCTCCTGCACATGGTCTTGTTTGTGTTGGTGAAAGGTTTCTCGCATGCTCTCAGCTCCGTGATCACGCTGCCACTTCAGGCTCTGTTCTCTATTGGTCTTGGTTTAAGGTACTAGTTATTGTAAGTGTAACAAAGTCCGTCATCTGTTCCCCCATAGTGTGCTTAATTAATTTTTATCCGTGCAGCCCCAAGTAGAAGTCAAGAGCTTTCCGGCTGAACCAATAATCGCCTTGGCTTCCAACAATGAGGGTACCTATATCGTTGGCGGTGGTTCCTCTGGAGATATTTACTTGTGGGAGGTAGAGTTTGATTTATTTTTTAAAAGTTAGAAACAATATATGCTTTAGAATTGAATACTAAAATTCCTTAATGGTGGAAAACTCTACTCGTCCTCCCATTATATAGTTGGCACATTCTTCGCTGTAGTATAAGCTGGCATGCTCGTTGTTGCAGGTTTTGAGCGGTAAACTTCTTAAGAAATGGCATGCTCATTATAGGGCAGTTACTTGCTTGGTATTCTCTGAAGATGACTCCCTGCTAGTTTCTGGTTCTGAAGATGGATGCGTTAGAGTTTGGTCCCTTCTAACGTATAAAATTTCATCCTCCAGTCGTGTGTCTGTTTCTTAGATTTTATTGTCACTAGTTGAAATTCTTCTTACGAACATGGTTATAACAGGGTATTTGATGATGGATGGCAAAGGGAAGCAAAACATTTGTATGAACATAGTTTCACTGGGCATAATCTACCTGTTACTGATATTGCTGTTGGCTATGGAGGATCCAATGCTATTATAATCTCTTCCTCAGTGGATCGTACTTGTAAGGTTTGACACTCTATTGACTTTCTATGTTGGTAATAGAATTTTGTGATGATGCGGCTATGTAGTTTGGTGAATTAATTAGTTTGGCAATCTCGTTGGCTTTTAATTTATTTTTCTTTGCTAGTTAAGTACTTGAATTTGGCTGTCTAATTGTATTGACTTGGTGAATCGCTCTTTCTTGCCATTACTGCAGCTTGACATTTAAGGTTTAGTTACATTCTCTTCTAGGATCGAAGTGTTTTTAATAGCGGTGGGATATATCAAATGTGTCAGACATAATTATTTCAAATGTGCACACATAAGGTAATTTTTTAAAAGAAATTTAGAAACAAAAAACAACTGTATGTTTGTGTGTTAATTGTTATCATTTCCGATGTGTTCATCTATTAAAATTGGTGTACTTGACACGGTGGTGATTAGTGAAGAAAATTTTGAGAAATAAGTATCTCTATATATTGTTGATCTGTATGTTTGTGTGTGGTATTAGCATGCTTAATACTACTGCGAGTGTAGAACTTTTCCTTTGCAACTCTTCATAAATTAATAAGGTGAGAACTAATATCTTATCTTAAAAAAGAGTTCATGCTGAAACTACATCAATGAACATCAACTTCTATGATCTATCCATGAAGTTTTAGGATTGCAGTTAAATTTCAATTCAAAATGTTGAAGAAAATTTTGAATTGTATTTGATTTATCACTAATGAGTAATGAACTACTTTCCTACCAAAACTTCTCTCGTATAAAATTTTCTTCCGGTTAGTCATATGTTGAGGGATATGTTGTATGTCAACTTGGCTATTCTAGGTGTGGAGCTTATCTAAGGGGAAATTATTAAGAAATATCATATTTCCTTCCATCATTGATGCAATTGCTTTGGATCCTGGTGAACATGTCTTCTATGGTGGTGGTAGAGATGGGAAGATATACACTGTTGCACTTAATGCTAAAAGCCCATCCAACAGTGATTATGGATTGCATATTCTGAGCTCATTATCAAATCAGAGGTTTGTATCTATACCTTTGATTTTTTTTTCATCATCTAAACATTTTTCTTGTCAAATTGCAATAATATATCTTACACTTGACGTCAAAGGTTAAGTCTTCCTCCAAATGTTTTTGCTCTTTCCGATGTCTAGAATCAGAATGTTATTAAAAAGTGTTCCATGCAATACAGTTGCTTGACTAATGATATAATTGTGCAATAGAATGTTGAGGAATTTCAAGTTGCTAGTAGTTCAGTTCAAATGTTTACTTTCACTCGGGGTATTTTTAATGGTGTCTTGATTTCTTAAGCACTTGGAATGGGTATTCTGCTTCCAAGTTGATAATATCTCTGTCTAGCTAGCATTCATCGATGAAATAATGATTCTGTTTCTTCTGAAGAAAAGAGCATTGCTGAAAAGCTACTTTATGGTTTCTTTAGATAAACTGAATTATTTATATACCTGTTTTTTATGTAGGATATTAATTTTTGTCCTTGTGAATTTGCCATGTTTCCTAACTTATTATCCTTCTGTATTAAAACCAGCAAGTCTGTTACTTCCTTGGCATACTGTTCAAGTGGTAATTTGTTGATCTCTGGGTCTGAGGATGGAGCAATCAGAGTTTGGGATACCAGAGCCAATAATATTATTCGTGTTTTCAAGCACTCTAAAGGTACGAACCCATCCACATGTTACTTGAATAAATATCTACTAAGTTGCATTTTGTTTCTTTTACTAACCCTGTGTAAGCATTCAAGTTATTTCTTGCACAGATATCTCCATTAAGTCGCATTTTGTTTTCTGTATGATCAATGCATCAGCATTGTGTGGATGAATGTAATGGATTCTGTTGATACAAATCAATTTTATCCATAGCTGAGGCTTTGGGCACGTCTTCCATTGTTTATGTCAGATTTTTTTTCGTCTGCTTTATGATTTGGATCGTAATAGATTGGAGGACATCTATTGAAATCAAATAAATTATGTCTTGAAGCTAGAATACACCTTTTATATCTCTTTTTCAATCCCTTCCCATTTTATGAACTTAATTTGATAATTTTATTCCAGGTACATTCATTTATATGGTTTTCTGCATATTAATTGCCCTAGCTAATGCAATCAGATTTTGCTTACAGTATTCACGAATTGCAATTTATTTTATTATCTCATTGCAAATGTGCTGATAATCCGTACTATTGTGTAGGTCCTGTAAATAATATACTTATTGTTAGACAACAGCTCCTTCCTAAAGCACAGATAACTTCAATCTCCCAAGGTTCCTTGAGAAAGCATCGATCGCTATTGCCTCCTGCCCTTGCAAAATTTGAAAATTCAAAGGACGAGGATGAAGATAGTGGTGTTATCATTGGTCTATCAGGTCCTCCCACAGAGCTTATGGATTTTTCCCCCCTTAGTTCTCACGTGATGGATAATCAAATCACAGAACTTCAGGTGCTTTCTCGTTTTCTATCCTCCTTCCCTGTTGACCCTAGGATTCCATTGCTTGCTAAATAATCTTGTATTCCGTGTTGTTCCATCATACATATTATTTTGTAATAAAACATGTTCCTCTAGACACCCAAAACTTATACTAACATGTGGTTTCTCTACTACAGCAACAGGGTTCTGCTGCCACAGGAATGGAGTTGGAAAGACTTAAGCTTGATTACGCAAAATCCAAGCAAATGCTAGAGCACTGGAGAAAAATGTACGACAATTTACATCAATTTTGTGTAGATGAGCTTCTTGATGGCGACGATCAAACGTTAAATTAGATGGCATTTCTGCCTGAGGATTGTTCTTATTTATGATGCACGATCAGAGTACTGCCAGTCCAGCAAAATACACGGCGAGCTTTAAATTTTTTCTTTATGTTATTCCACATATATATATATATATATATATTTTTAAACAATTTTGTTTTGTACCAGCTTTGTATAATTAAGTCAGAACTGTATTCAATAGTTGTTAGGAAGCCATCCTCGATTAATTTAAATACCAAACACTTTTTTCTAGATAAGATCTGTACATGGTGTTACACTGGGAGTACCCTGGATTTATAAGAATATTTTTGGTCATGTGGGTGTTTGATTCTACTTGTTATGATTTTTGGG

mRNA sequence

ATGGTGCTAGTGGTCGCTTCGTCCTCCATTGATTCGGGGATTGGTTGTTGGGACCTCCACACGGGTGCAGAACAACTACGTTACAAGTCTTGTGCTTCTCCTGCACATGGTCTTGTTTGTGTTGGTGAAAGGTTTCTCGCATGCTCTCAGCTCCGTGATCACGCTGCCACTTCAGGCTCTGTTCTCTATTGGTCTTGGTTTAAGCCCCAAGTAGAAGTCAAGAGCTTTCCGGCTGAACCAATAATCGCCTTGGCTTCCAACAATGAGGGTACCTATATCGTTGGCGGTGGTTCCTCTGGAGATATTTACTTGTGGGAGGTTTTGAGCGGTAAACTTCTTAAGAAATGGCATGCTCATTATAGGGCAGTTACTTGCTTGGTATTCTCTGAAGATGACTCCCTGCTAGTTTCTGGTTCTGAAGATGGATGCGTTAGAGTTTGGTCCCTTCTAACGGTATTTGATGATGGATGGCAAAGGGAAGCAAAACATTTGTATGAACATAGTTTCACTGGGCATAATCTACCTGTTACTGATATTGCTGTTGGCTATGGAGGATCCAATGCTATTATAATCTCTTCCTCAGTGGATCGTACTTGTAAGGTGTGGAGCTTATCTAAGGGGAAATTATTAAGAAATATCATATTTCCTTCCATCATTGATGCAATTGCTTTGGATCCTGGTGAACATGTCTTCTATGGTGGTGGTAGAGATGGGAAGATATACACTGTTGCACTTAATGCTAAAAGCCCATCCAACAGTGATTATGGATTGCATATTCTGAGCTCATTATCAAATCAGAGCAAGTCTGTTACTTCCTTGGCATACTGTTCAAGTGGTAATTTGTTGATCTCTGGGTCTGAGGATGGAGCAATCAGAGTTTGGGATACCAGAGCCAATAATATTATTCGTGTTTTCAAGCACTCTAAAGGTCCTGTAAATAATATACTTATTGTTAGACAACAGCTCCTTCCTAAAGCACAGATAACTTCAATCTCCCAAGGTTCCTTGAGAAAGCATCGATCGCTATTGCCTCCTGCCCTTGCAAAATTTGAAAATTCAAAGGACGAGGATGAAGATAGTGGTGTTATCATTGGTCTATCAGGTCCTCCCACAGAGCTTATGGATTTTTCCCCCCTTAGTTCTCACGTGATGGATAATCAAATCACAGAACTTCAGCAACAGGGTTCTGCTGCCACAGGAATGGAGTTGGAAAGACTTAAGCTTGATTACGCAAAATCCAAGCAAATGCTAGAGCACTGGAGAAAAATGTACGACAATTTACATCAATTTTGTGTAGATGAGCTTCTTGATGGCGACGATCAAACGTTAAATTAG

Coding sequence (CDS)

ATGGTGCTAGTGGTCGCTTCGTCCTCCATTGATTCGGGGATTGGTTGTTGGGACCTCCACACGGGTGCAGAACAACTACGTTACAAGTCTTGTGCTTCTCCTGCACATGGTCTTGTTTGTGTTGGTGAAAGGTTTCTCGCATGCTCTCAGCTCCGTGATCACGCTGCCACTTCAGGCTCTGTTCTCTATTGGTCTTGGTTTAAGCCCCAAGTAGAAGTCAAGAGCTTTCCGGCTGAACCAATAATCGCCTTGGCTTCCAACAATGAGGGTACCTATATCGTTGGCGGTGGTTCCTCTGGAGATATTTACTTGTGGGAGGTTTTGAGCGGTAAACTTCTTAAGAAATGGCATGCTCATTATAGGGCAGTTACTTGCTTGGTATTCTCTGAAGATGACTCCCTGCTAGTTTCTGGTTCTGAAGATGGATGCGTTAGAGTTTGGTCCCTTCTAACGGTATTTGATGATGGATGGCAAAGGGAAGCAAAACATTTGTATGAACATAGTTTCACTGGGCATAATCTACCTGTTACTGATATTGCTGTTGGCTATGGAGGATCCAATGCTATTATAATCTCTTCCTCAGTGGATCGTACTTGTAAGGTGTGGAGCTTATCTAAGGGGAAATTATTAAGAAATATCATATTTCCTTCCATCATTGATGCAATTGCTTTGGATCCTGGTGAACATGTCTTCTATGGTGGTGGTAGAGATGGGAAGATATACACTGTTGCACTTAATGCTAAAAGCCCATCCAACAGTGATTATGGATTGCATATTCTGAGCTCATTATCAAATCAGAGCAAGTCTGTTACTTCCTTGGCATACTGTTCAAGTGGTAATTTGTTGATCTCTGGGTCTGAGGATGGAGCAATCAGAGTTTGGGATACCAGAGCCAATAATATTATTCGTGTTTTCAAGCACTCTAAAGGTCCTGTAAATAATATACTTATTGTTAGACAACAGCTCCTTCCTAAAGCACAGATAACTTCAATCTCCCAAGGTTCCTTGAGAAAGCATCGATCGCTATTGCCTCCTGCCCTTGCAAAATTTGAAAATTCAAAGGACGAGGATGAAGATAGTGGTGTTATCATTGGTCTATCAGGTCCTCCCACAGAGCTTATGGATTTTTCCCCCCTTAGTTCTCACGTGATGGATAATCAAATCACAGAACTTCAGCAACAGGGTTCTGCTGCCACAGGAATGGAGTTGGAAAGACTTAAGCTTGATTACGCAAAATCCAAGCAAATGCTAGAGCACTGGAGAAAAATGTACGACAATTTACATCAATTTTGTGTAGATGAGCTTCTTGATGGCGACGATCAAACGTTAAATTAG

Protein sequence

MVLVVASSSIDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDHAATSGSVLYWSWFKPQVEVKSFPAEPIIALASNNEGTYIVGGGSSGDIYLWEVLSGKLLKKWHAHYRAVTCLVFSEDDSLLVSGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNLPVTDIAVGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIYTVALNAKSPSNSDYGLHILSSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRANNIIRVFKHSKGPVNNILIVRQQLLPKAQITSISQGSLRKHRSLLPPALAKFENSKDEDEDSGVIIGLSGPPTELMDFSPLSSHVMDNQITELQQQGSAATGMELERLKLDYAKSKQMLEHWRKMYDNLHQFCVDELLDGDDQTLN

Homology

[Close]

BLAST of Spg016230 vs. NCBI nr
Match: XP_022941447.1 (protein ROOT INITIATION DEFECTIVE 3 [Cucurbita moschata] >KAG6608496.1 Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 822.0 bits (2122), Expect = 2.5e-234
Identity = 398/439 (90.66%), Postives = 416/439 (94.76%), Query Frame = 0


Query: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDHAATSGS 60
           MVLVVASSS+DSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRD AATSGS
Sbjct: 1   MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60

Query: 61  VLYWSWFKPQVEVKSFPAEPIIALASNNEGTYIVGGGSSGDIYLWEVLSGKLLKKWHAHY 120
           VLYWSWFKPQVEVKSFPAEPI+ALASNNEGTYIVGGG SGDIYLWEVLSG+LL KWHAHY
Sbjct: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLVSGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNLPVTDIA 180
           RAVTCLVFSEDDSLL+SGSEDGCVRVWSLL VFDDGWQRE+KHLYEHSFTGHNLPVTDI 
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           +GYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTVALNAKSPSNSDYGLHILSSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRANN 300
           YT ALNAKSPS+SDYGLHIL SLSNQSKSVTSLAYCSSGNLLISGSEDGAI+VWDTR NN
Sbjct: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN 300

Query: 301 IIRVFKHSKGPVNNILIVRQQLLPKAQITSISQGSLRKHRSLLPPALAKFENSKDEDEDS 360
           IIRV KHSKGPVNN+LIVRQQLLP +Q+   SQGSLRKHRSLLPPALAKF NSKD+DED+
Sbjct: 301 IIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT 360

Query: 361 GVIIGLSGPPTELMDFSPLSSHVMDNQITELQQQGSAATGMELERLKLDYAKSKQMLEHW 420
           GVIIG SGPP E M FSP+SSHVMDNQITELQQQGSAATGMELERLK DY KS QM + W
Sbjct: 361 GVIIGRSGPPMESMGFSPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQMQQQW 420

Query: 421 RKMYDNLHQFCVDELLDGD 440
           RK+YDNLHQ+CV+ELLDGD
Sbjct: 421 RKLYDNLHQYCVNELLDGD 439

[Close]

BLAST of Spg016230 vs. NCBI nr
Match: XP_023521513.1 (protein ROOT INITIATION DEFECTIVE 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 820.8 bits (2119), Expect = 5.5e-234
Identity = 395/439 (89.98%), Postives = 416/439 (94.76%), Query Frame = 0


Query: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDHAATSGS 60
           MVLVVASSS+DSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRD AATSGS
Sbjct: 1   MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60

Query: 61  VLYWSWFKPQVEVKSFPAEPIIALASNNEGTYIVGGGSSGDIYLWEVLSGKLLKKWHAHY 120
           VLYWSWFKPQVEVKSFPAEPI+ALASNNEGTYI+GGG SGDIYLWEV+SG+LL KWHAHY
Sbjct: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIIGGGFSGDIYLWEVMSGRLLMKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLVSGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNLPVTDIA 180
           RAVTCLVFSEDDSLL+SGSEDGCVRVWSLL VFDDGWQRE+KHLYEHSFTGHNLPVTDI 
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           +GYGGSNAII+SSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 IGYGGSNAIIVSSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTVALNAKSPSNSDYGLHILSSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRANN 300
           YT ALNAKSPS+SDYGLHIL SLSNQSKSVTSLAYCSSGNLLISGSEDGAI+VWDTR NN
Sbjct: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN 300

Query: 301 IIRVFKHSKGPVNNILIVRQQLLPKAQITSISQGSLRKHRSLLPPALAKFENSKDEDEDS 360
           IIRV KHSKGPVNN+LIVRQQLLP +Q+   SQGSLRKHRSLLPPALAKF NSKD+DED+
Sbjct: 301 IIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT 360

Query: 361 GVIIGLSGPPTELMDFSPLSSHVMDNQITELQQQGSAATGMELERLKLDYAKSKQMLEHW 420
           GVIIG SGPP E M FSP+SSHVMDNQITELQQQGSAATGMELERLK DY KS QM + W
Sbjct: 361 GVIIGRSGPPVESMGFSPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQMQQQW 420

Query: 421 RKMYDNLHQFCVDELLDGD 440
           RK+YDNLHQ+CV+ELLDGD
Sbjct: 421 RKLYDNLHQYCVNELLDGD 439

[Close]

BLAST of Spg016230 vs. NCBI nr
Match: XP_022982251.1 (protein ROOT INITIATION DEFECTIVE 3 [Cucurbita maxima])

HSP 1 Score: 809.7 bits (2090), Expect = 1.3e-230
Identity = 392/439 (89.29%), Postives = 413/439 (94.08%), Query Frame = 0


Query: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDHAATSGS 60
           MVLVVASSS+DSGIGCWDLHTGAEQL YKSCASPAHGLVCVGERFLACSQLRD AATSGS
Sbjct: 1   MVLVVASSSVDSGIGCWDLHTGAEQLCYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60

Query: 61  VLYWSWFKPQVEVKSFPAEPIIALASNNEGTYIVGGGSSGDIYLWEVLSGKLLKKWHAHY 120
           VLYWSWFKPQVEVKSFPAEPI+ALASNNEGTYIVGGG SGDIYLWEVLSG+LL KWHAHY
Sbjct: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLVSGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNLPVTDIA 180
           RAVTCL FSEDDSLL+SGSEDGCVRVWSLL VFDDGWQRE+KHLYEHSFTGHNLPVTDI 
Sbjct: 121 RAVTCLEFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           +GYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTVALNAKSPSNSDYGLHILSSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRANN 300
           YT ALNAKSPS+SDYGLHIL SLSNQSKSVTSLAYCSSGNLLISGSEDGAI+VWDTR NN
Sbjct: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN 300

Query: 301 IIRVFKHSKGPVNNILIVRQQLLPKAQITSISQGSLRKHRSLLPPALAKFENSKDEDEDS 360
           IIRV KHSKGPVNN+LIV+ QLLP +Q+   SQGSLRKHRSLLPPALAKF NSKD+DED+
Sbjct: 301 IIRVLKHSKGPVNNLLIVQHQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT 360

Query: 361 GVIIGLSGPPTELMDFSPLSSHVMDNQITELQQQGSAATGMELERLKLDYAKSKQMLEHW 420
           GVIIG SGPP E M FSP+SSHVMD+QITELQQQGSAATGMELERLK +Y KS QM + W
Sbjct: 361 GVIIGRSGPPMESMGFSPISSHVMDHQITELQQQGSAATGMELERLKREYGKSMQMQQQW 420

Query: 421 RKMYDNLHQFCVDELLDGD 440
           RK+YDNLHQ+CV+ELLDGD
Sbjct: 421 RKLYDNLHQYCVNELLDGD 439

[Close]

BLAST of Spg016230 vs. NCBI nr
Match: XP_038898957.1 (protein ROOT INITIATION DEFECTIVE 3 [Benincasa hispida])

HSP 1 Score: 808.9 bits (2088), Expect = 2.2e-230
Identity = 398/444 (89.64%), Postives = 415/444 (93.47%), Query Frame = 0


Query: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDHAATSGS 60
           MVLVVASSSIDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRD AAT+GS
Sbjct: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATAGS 60

Query: 61  VLYWSWFKPQVEVKSFPAEPIIALASNNEGTYIVGGGSSGDIYLWEVLSGKLLKKWHAHY 120
           VLYWSW KPQVEVKSFPAEPI+ALASN+EGTYIVGGG SGDIYLWEVLSG+LLKKWHAHY
Sbjct: 61  VLYWSWCKPQVEVKSFPAEPIMALASNDEGTYIVGGGLSGDIYLWEVLSGRLLKKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLVSGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNLPVTDIA 180
           RAVTCLVFSEDDSLL+SGSEDGC+RVW+LLTVFDDGWQREAKHLYEHSFTGHNLPVTDI 
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWALLTVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           VGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIID IALDPGEHVFYGGGRDGKI
Sbjct: 181 VGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDVIALDPGEHVFYGGGRDGKI 240

Query: 241 YTVALNAKSPSNSDYGLHILSSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRANN 300
           YT ALNAK PS  DYGLHIL SLSNQSKSVT+LAYCSSGNLLISGSEDGAIRVWDTR NN
Sbjct: 241 YTAALNAKCPSTGDYGLHILGSLSNQSKSVTALAYCSSGNLLISGSEDGAIRVWDTRTNN 300

Query: 301 IIRVFKHSKGPVNNILIVRQQLLPKAQITSISQGSLRKHRSLLPPALAKFENSKDEDEDS 360
           +IRVF+HSKGPVNNIL+VRQQ+LPK+Q  S SQG LRKHRSLLPPALAKFENSKDEDED+
Sbjct: 301 VIRVFRHSKGPVNNILLVRQQVLPKSQ--STSQGFLRKHRSLLPPALAKFENSKDEDEDT 360

Query: 361 GVIIGLSGPPTELMDFSPLSSHVMDNQITELQQQGSAATGMELERLKLDYAKSKQMLEHW 420
           GVIIG +G P E M F  LSSHVMDNQITELQQQGSAA GMELERLK D  KS QML+HW
Sbjct: 361 GVIIGPTGLPKESMGFPALSSHVMDNQITELQQQGSAANGMELERLKYDCGKSMQMLQHW 420

Query: 421 RKMYDNLHQFCVDELLDGDDQTLN 445
           RKMYDNLHQFCV+ELLDG DQT N
Sbjct: 421 RKMYDNLHQFCVNELLDG-DQTKN 441

[Close]

BLAST of Spg016230 vs. NCBI nr
Match: XP_008452567.1 (PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Cucumis melo])

HSP 1 Score: 806.2 bits (2081), Expect = 1.4e-229
Identity = 397/444 (89.41%), Postives = 417/444 (93.92%), Query Frame = 0


Query: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDHAATSGS 60
           MVL+VASSSIDSGIGCWDLHTGAEQLRYKSCASP HGLVCVGE+FLACSQLRD AAT+GS
Sbjct: 1   MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS 60

Query: 61  VLYWSWFKPQVEVKSFPAEPIIALASNNEGTYIVGGGSSGDIYLWEVLSGKLLKKWHAHY 120
           VLYWSW KPQVEVKSFPAEPI+ALASNNEGTYIVGGG SGDIYLWEVLSG+LLKKWHAHY
Sbjct: 61  VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLVSGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNLPVTDIA 180
           RAVTCLVFSEDDSLL+SGSEDGC+RVWSL+TVFDDGWQREAKHLYEHSFTGHNLPVTDI 
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           VGYGG NAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTVALNAKSPSNSDYGLHILSSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRANN 300
           YT ALNAK PS+SDYGLHIL SLSNQSKSVTSLAYCSSGNLLISG EDGAIRVWDTR NN
Sbjct: 241 YTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGYEDGAIRVWDTRTNN 300

Query: 301 IIRVFKHSKGPVNNILIVRQQLLPKAQITSISQGSLRKHRSLLPPALAKFENSKDEDEDS 360
           +IRVF+HSKGPVNNIL+V+QQ LPK+Q  S SQGSLRKHR +LPPALAKFENSKDEDE +
Sbjct: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQ--STSQGSLRKHRPILPPALAKFENSKDEDEYT 360

Query: 361 GVIIGLSGPPTELMDFSPLSSHVMDNQITELQQQGSAATGMELERLKLDYAKSKQMLEHW 420
           GVII  SGPP E M+FS LSSHVMDNQITELQQQGSAAT MELERLK DY KSKQML+HW
Sbjct: 361 GVIIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQHW 420

Query: 421 RKMYDNLHQFCVDELLDGDDQTLN 445
           RKMYDNLHQFCV+ELLDG +QT N
Sbjct: 421 RKMYDNLHQFCVNELLDG-NQTKN 441

[Close]

BLAST of Spg016230 vs. ExPASy Swiss-Prot
Match: Q9M3B4 (Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1 SV=1)

HSP 1 Score: 507.7 bits (1306), Expect = 1.3e-142
Identity = 257/439 (58.54%), Postives = 325/439 (74.03%), Query Frame = 0


Query: 2   VLVVASSSIDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDHAATSGSV 61
           + V+ASSSID GIG WDL TG EQL++K CASPAHGL  VGE+FLA SQL     TSGS+
Sbjct: 3   ITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQL-SARNTSGSI 62

Query: 62  LYWSWFKPQVEVKSFPAEPIIALASNNEGTYIVGGGSSGDIYLWEVLSGKLLKKWHAHYR 121
            YWSW KPQ EVKS+P EPI ALA+NNEGTY+VGGG SGDIYLWEV +GKLLKKWH HYR
Sbjct: 63  FYWSWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYR 122

Query: 122 AVTCLVFSEDDSLLVSGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNLPVTDIAV 181
           +VTCLVFS DDSLLVSGS+DG +RVWSL+ +FDD  +++   LYEH+F  H + VTDI +
Sbjct: 123 SVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVI 182

Query: 182 GYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIY 241
            YGG NA+IISSS DRTCKVWSLS+GKLL+NIIFPS+I+A+ALDPG  VFY G RD KIY
Sbjct: 183 DYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDSKIY 242

Query: 242 TVALNAKSPSNSDYGLHILSSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRANNI 301
             A+NA     S+YG  +L S+S + K++T LAYC+ GNLLISGSEDG + VWD ++   
Sbjct: 243 IGAINA----TSEYGTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVVCVWDPKSLRH 302

Query: 302 IRVFKHS----KGPVNNILIVRQQLLPKAQITSISQGSLRKHRSLLPPALAKFENSKDED 361
           +R   H+    KGPVNNI IVR+ ++  +  T +   S +   +L+PP L K+E   ++ 
Sbjct: 303 VRTLIHAKGSRKGPVNNIQIVRKTIVANSNKTQV---SWKSRGALIPPPLEKYERPVEDT 362

Query: 362 EDSGVIIGLSGPP-TELMDFSP-LSSHVMDNQITELQQQGSAATGMELERLKLDYAKSKQ 421
            D   I+ +  PP +++  +S  LS+ ++D Q+ ELQQQGSAAT ME+ERLKL+Y +S Q
Sbjct: 363 MDG--IVTVDPPPFSDVPVYSSFLSADLIDEQVKELQQQGSAATEMEMERLKLEYKRSLQ 422

Query: 422 MLEHWRKMYDNLHQFCVDE 435
           M E W+K Y+NL Q  ++E
Sbjct: 423 MNEQWQKNYENLLQVVMEE 431

[Close]

BLAST of Spg016230 vs. ExPASy Swiss-Prot
Match: A0A1L8HX76 (WD repeat-containing protein 18 OS=Xenopus laevis OX=8355 GN=wdr18 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.5e-42
Identity = 104/320 (32.50%), Postives = 170/320 (53.12%), Query Frame = 0


Query: 3   LVVASSSIDSGIGC--WDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDHAATSGS 62
           LV+++ +      C  W+  TG+  L Y+   +   GL  +G ++L   QL  +      
Sbjct: 7   LVLSADAAGQVANCTVWEPVTGSVLLTYRGGNTSHRGLAVLGGQYLLGGQLGKNYIN--- 66

Query: 63  VLYWSWFKPQVEVKSFPAEPIIALASNNEGTYIVGGGSSGDIYLWEVLSGKLLKKWHAHY 122
            ++    + Q++ K     P+  L+++  G Y+V  G +  IYLWEV +G LL   ++HY
Sbjct: 67  -VWELQRRDQLQQKIVCPGPVNCLSASPNGLYLV-AGIAESIYLWEVSTGHLLAILNSHY 126

Query: 123 RAVTCLVFSEDDSLLVSGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNLPVTDIA 182
           + VTCL F++D S ++SG++D  V VW L +V      R  +  Y   ++ H+LP+TD+ 
Sbjct: 127 QDVTCLTFTDDSSHIISGAKDSLVLVWGLYSVLQVETSRGPEPRY--VWSRHSLPITDVQ 186

Query: 183 VGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 242
            G GG  A + +SS+D+T K+W +  G LL +++F   I ++A DP E+  + GG DG I
Sbjct: 187 CGIGGPQARVATSSLDQTIKLWDICSGDLLVSVLFDVRITSVAFDPAEYHLFCGGSDGVI 246

Query: 243 YTVALNAKSPSNSDYGLHILSSL--SNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRA 302
           Y V L   +P   +   H    +        VT L+    G++LISGS D  + VWD ++
Sbjct: 247 YQVDLYT-TPEQRERPFHPEQEMVFKGHRNQVTCLSVSLDGSMLISGSHDETVCVWDIQS 306

Query: 303 NNIIRVFKHSKGPVNNILIV 319
              +R   H +GPV N+ I+
Sbjct: 307 KQSLRSVPH-RGPVTNVFII 317

[Close]

BLAST of Spg016230 vs. ExPASy Swiss-Prot
Match: Q9BV38 (WD repeat-containing protein 18 OS=Homo sapiens OX=9606 GN=WDR18 PE=1 SV=2)

HSP 1 Score: 172.9 bits (437), Expect = 7.9e-42
Identity = 107/326 (32.82%), Postives = 170/326 (52.15%), Query Frame = 0


Query: 17  WDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDHAATSGSVLYWSWFKPQVEVKSF 76
           W+LH+GA  L Y+   +   GL  +   +L  +QL  +  ++  +      K Q++ K  
Sbjct: 23  WELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQLGKNYISAWELQR----KDQLQQKIM 82

Query: 77  PAEPIIALASNNEGTYIVGGGSSGDIYLWEVLSGKLLKKWHAHYRAVTCLVFSEDDSLLV 136
              P+  L ++  G Y++ G +   I+LWEV +G LL     HY+ V+CL F+ D S  +
Sbjct: 83  CPGPVTCLTASPNGLYVLAGVAE-SIHLWEVSTGNLLVILSRHYQDVSCLQFTGDSSHFI 142

Query: 137 SGSEDGCVRVWSLLTVFDDGWQR--EAKHLYEHSFTGHNLPVTDIAVGYGGSNAIIISSS 196
           SG +D  V VWSL +V      R    +H++ H    H LP+TD+  G+GG  A + +SS
Sbjct: 143 SGGKDCLVLVWSLCSVLQADPSRIPAPRHVWSH----HALPITDLHCGFGGPLARVATSS 202

Query: 197 VDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIYTVALNAKSPSNSD 256
           +D+T K+W +S G+LL +++F   I A+ +D  EH  + GG +G I+ V L    P   +
Sbjct: 203 LDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCGGSEGSIFQVDL-FTWPGQRE 262

Query: 257 YGLHILSSLSNQSK----SVTSLAYCSSGNLLISGSEDGAIRVWDTRANNIIRVFKHSKG 316
              H         K     VT L+  + G++L+SGS D  +R+WD ++   IR     KG
Sbjct: 263 RSFHPEQDAGKVFKGHRNQVTCLSVSTDGSVLLSGSHDETVRLWDVQSKQCIRTVA-LKG 322

Query: 317 PVNNILIVRQQLLPKAQITSISQGSL 337
           PV N  I+   L P + ++S  + SL
Sbjct: 323 PVTNAAIL---LAPVSMLSSDFRPSL 334

[Close]

BLAST of Spg016230 vs. ExPASy Swiss-Prot
Match: Q3SZD4 (WD repeat-containing protein 18 OS=Bos taurus OX=9913 GN=WDR18 PE=2 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.9e-41
Identity = 107/323 (33.13%), Postives = 165/323 (51.08%), Query Frame = 0


Query: 17  WDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDHAATSGSVLYWSW---FKPQVEV 76
           W+LH+GA  L Y+   +   GL  +   +L  +QL       G     +W    K Q++ 
Sbjct: 23  WELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL-------GKNYICAWELQRKDQLQQ 82

Query: 77  KSFPAEPIIALASNNEGTYIVGGGSSGDIYLWEVLSGKLLKKWHAHYRAVTCLVFSEDDS 136
           K     P+  L ++  G Y++  G S +IYLWEV +G LL     HY+ V+CL F+ D S
Sbjct: 83  KIMCPGPVTCLTTSPNGLYVL-AGISENIYLWEVSTGNLLVILSRHYQDVSCLQFTGDSS 142

Query: 137 LLVSGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNLPVTDIAVGYGGSNAIIISS 196
             +SG +D  V  WSL +V      R       H ++ H LP+TD+  G+GG  A + ++
Sbjct: 143 HFISGGKDCLVLAWSLCSVLQADPSRTPAP--RHVWSRHTLPITDLHCGFGGPLARVATA 202

Query: 197 SVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIYTVAL------NA 256
           S+D+T K+W +S G+LL +++F   I A+ +D  EH  + GG DG I+ V L        
Sbjct: 203 SLDQTVKLWEVSSGELLLSVLFDVGILAVTMDLAEHYMFCGGSDGSIFQVDLCTWPGQRE 262

Query: 257 KSPSNSDYGLHILSSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRANNIIRVFKH 316
           KS         +     NQ   VT L+  + G++L+SGS D  +R+WD ++   +R    
Sbjct: 263 KSFQPEQEHGKVFRGHRNQ---VTCLSVSTDGSVLLSGSHDETVRLWDVQSQQCLRTVT- 322

Query: 317 SKGPVNNILIVRQQLLPKAQITS 331
            KGPV N  I+   L P + ++S
Sbjct: 323 LKGPVTNACIM---LAPVSMLSS 328

[Close]

BLAST of Spg016230 vs. ExPASy Swiss-Prot
Match: Q499N3 (WD repeat-containing protein 18 OS=Rattus norvegicus OX=10116 GN=Wdr18 PE=2 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 7.4e-40
Identity = 105/324 (32.41%), Postives = 165/324 (50.93%), Query Frame = 0


Query: 1   MVLVVASSSIDSGIGC--WDLHTGAEQLRYKSCASPAHGLVCV-GERFLACSQLRDHAAT 60
           M +VV + S      C  W+LH+GA  L Y+   +   GL  + GE  LA  Q +++   
Sbjct: 5   MEVVVCTDSAAPLWSCMVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQQGKNY--- 64

Query: 61  SGSVLYWS-WFKPQVEVKSFPAEPIIALASNNEGTYIVGGGSSGDIYLWEVLSGKLLKKW 120
              +  W    K Q++ K     P+  L +   G Y++  G +  IYLWEV +G LL   
Sbjct: 65  ---ICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVL-AGIAESIYLWEVSTGNLLVIL 124

Query: 121 HAHYRAVTCLVFSEDDSLLVSGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNLPV 180
             HY+ V+CL F+ D S  VS  +D  V  WSL +V      R       H ++ H LP+
Sbjct: 125 SRHYQDVSCLKFTGDGSHFVSAGKDCLVLAWSLCSVLQADPSRILAP--RHVWSQHTLPI 184

Query: 181 TDIAVGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGR 240
           TD+  G+GG  A + ++S+D+T K+W++S G LL +++F   I ++ +D  EH  + GG 
Sbjct: 185 TDLHCGFGGPMARVATASLDQTMKLWAISSGDLLLSVLFDMGITSVTMDLAEHYIFCGGS 244

Query: 241 DGKIYTVALNAK-SPSNSDY--GLHILSSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRV 300
           DG I+ V L ++  P    +    +           VT L+  + G++L+SGS D ++R+
Sbjct: 245 DGSIFQVDLCSRPGPREQSFQPEQNTGKVFKGHRNQVTCLSVSTDGSILLSGSHDESVRL 304

Query: 301 WDTRANNIIRVFKHSKGPVNNILI 318
           WD ++   +R     KGPV N  I
Sbjct: 305 WDVKSKQCVRTVP-LKGPVTNAAI 318

[Close]

BLAST of Spg016230 vs. ExPASy TrEMBL
Match: A0A6J1FMG7 (protein ROOT INITIATION DEFECTIVE 3 OS=Cucurbita moschata OX=3662 GN=LOC111446741 PE=4 SV=1)

HSP 1 Score: 822.0 bits (2122), Expect = 1.2e-234
Identity = 398/439 (90.66%), Postives = 416/439 (94.76%), Query Frame = 0


Query: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDHAATSGS 60
           MVLVVASSS+DSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRD AATSGS
Sbjct: 1   MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60

Query: 61  VLYWSWFKPQVEVKSFPAEPIIALASNNEGTYIVGGGSSGDIYLWEVLSGKLLKKWHAHY 120
           VLYWSWFKPQVEVKSFPAEPI+ALASNNEGTYIVGGG SGDIYLWEVLSG+LL KWHAHY
Sbjct: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLVSGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNLPVTDIA 180
           RAVTCLVFSEDDSLL+SGSEDGCVRVWSLL VFDDGWQRE+KHLYEHSFTGHNLPVTDI 
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           +GYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTVALNAKSPSNSDYGLHILSSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRANN 300
           YT ALNAKSPS+SDYGLHIL SLSNQSKSVTSLAYCSSGNLLISGSEDGAI+VWDTR NN
Sbjct: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN 300

Query: 301 IIRVFKHSKGPVNNILIVRQQLLPKAQITSISQGSLRKHRSLLPPALAKFENSKDEDEDS 360
           IIRV KHSKGPVNN+LIVRQQLLP +Q+   SQGSLRKHRSLLPPALAKF NSKD+DED+
Sbjct: 301 IIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT 360

Query: 361 GVIIGLSGPPTELMDFSPLSSHVMDNQITELQQQGSAATGMELERLKLDYAKSKQMLEHW 420
           GVIIG SGPP E M FSP+SSHVMDNQITELQQQGSAATGMELERLK DY KS QM + W
Sbjct: 361 GVIIGRSGPPMESMGFSPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQMQQQW 420

Query: 421 RKMYDNLHQFCVDELLDGD 440
           RK+YDNLHQ+CV+ELLDGD
Sbjct: 421 RKLYDNLHQYCVNELLDGD 439

[Close]

BLAST of Spg016230 vs. ExPASy TrEMBL
Match: A0A6J1IYT8 (protein ROOT INITIATION DEFECTIVE 3 OS=Cucurbita maxima OX=3661 GN=LOC111481134 PE=4 SV=1)

HSP 1 Score: 809.7 bits (2090), Expect = 6.1e-231
Identity = 392/439 (89.29%), Postives = 413/439 (94.08%), Query Frame = 0


Query: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDHAATSGS 60
           MVLVVASSS+DSGIGCWDLHTGAEQL YKSCASPAHGLVCVGERFLACSQLRD AATSGS
Sbjct: 1   MVLVVASSSVDSGIGCWDLHTGAEQLCYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60

Query: 61  VLYWSWFKPQVEVKSFPAEPIIALASNNEGTYIVGGGSSGDIYLWEVLSGKLLKKWHAHY 120
           VLYWSWFKPQVEVKSFPAEPI+ALASNNEGTYIVGGG SGDIYLWEVLSG+LL KWHAHY
Sbjct: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLVSGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNLPVTDIA 180
           RAVTCL FSEDDSLL+SGSEDGCVRVWSLL VFDDGWQRE+KHLYEHSFTGHNLPVTDI 
Sbjct: 121 RAVTCLEFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           +GYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTVALNAKSPSNSDYGLHILSSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRANN 300
           YT ALNAKSPS+SDYGLHIL SLSNQSKSVTSLAYCSSGNLLISGSEDGAI+VWDTR NN
Sbjct: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN 300

Query: 301 IIRVFKHSKGPVNNILIVRQQLLPKAQITSISQGSLRKHRSLLPPALAKFENSKDEDEDS 360
           IIRV KHSKGPVNN+LIV+ QLLP +Q+   SQGSLRKHRSLLPPALAKF NSKD+DED+
Sbjct: 301 IIRVLKHSKGPVNNLLIVQHQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT 360

Query: 361 GVIIGLSGPPTELMDFSPLSSHVMDNQITELQQQGSAATGMELERLKLDYAKSKQMLEHW 420
           GVIIG SGPP E M FSP+SSHVMD+QITELQQQGSAATGMELERLK +Y KS QM + W
Sbjct: 361 GVIIGRSGPPMESMGFSPISSHVMDHQITELQQQGSAATGMELERLKREYGKSMQMQQQW 420

Query: 421 RKMYDNLHQFCVDELLDGD 440
           RK+YDNLHQ+CV+ELLDGD
Sbjct: 421 RKLYDNLHQYCVNELLDGD 439

[Close]

BLAST of Spg016230 vs. ExPASy TrEMBL
Match: A0A1S3BU36 (protein ROOT INITIATION DEFECTIVE 3 OS=Cucumis melo OX=3656 GN=LOC103493552 PE=4 SV=1)

HSP 1 Score: 806.2 bits (2081), Expect = 6.8e-230
Identity = 397/444 (89.41%), Postives = 417/444 (93.92%), Query Frame = 0


Query: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDHAATSGS 60
           MVL+VASSSIDSGIGCWDLHTGAEQLRYKSCASP HGLVCVGE+FLACSQLRD AAT+GS
Sbjct: 1   MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS 60

Query: 61  VLYWSWFKPQVEVKSFPAEPIIALASNNEGTYIVGGGSSGDIYLWEVLSGKLLKKWHAHY 120
           VLYWSW KPQVEVKSFPAEPI+ALASNNEGTYIVGGG SGDIYLWEVLSG+LLKKWHAHY
Sbjct: 61  VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLVSGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNLPVTDIA 180
           RAVTCLVFSEDDSLL+SGSEDGC+RVWSL+TVFDDGWQREAKHLYEHSFTGHNLPVTDI 
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           VGYGG NAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTVALNAKSPSNSDYGLHILSSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRANN 300
           YT ALNAK PS+SDYGLHIL SLSNQSKSVTSLAYCSSGNLLISG EDGAIRVWDTR NN
Sbjct: 241 YTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGYEDGAIRVWDTRTNN 300

Query: 301 IIRVFKHSKGPVNNILIVRQQLLPKAQITSISQGSLRKHRSLLPPALAKFENSKDEDEDS 360
           +IRVF+HSKGPVNNIL+V+QQ LPK+Q  S SQGSLRKHR +LPPALAKFENSKDEDE +
Sbjct: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQ--STSQGSLRKHRPILPPALAKFENSKDEDEYT 360

Query: 361 GVIIGLSGPPTELMDFSPLSSHVMDNQITELQQQGSAATGMELERLKLDYAKSKQMLEHW 420
           GVII  SGPP E M+FS LSSHVMDNQITELQQQGSAAT MELERLK DY KSKQML+HW
Sbjct: 361 GVIIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQHW 420

Query: 421 RKMYDNLHQFCVDELLDGDDQTLN 445
           RKMYDNLHQFCV+ELLDG +QT N
Sbjct: 421 RKMYDNLHQFCVNELLDG-NQTKN 441

[Close]

BLAST of Spg016230 vs. ExPASy TrEMBL
Match: A0A0A0KZT0 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G639920 PE=4 SV=1)

HSP 1 Score: 801.6 bits (2069), Expect = 1.7e-228
Identity = 395/444 (88.96%), Postives = 416/444 (93.69%), Query Frame = 0


Query: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDHAATSGS 60
           MVL+VASSSIDSGIGCWDLHTG+EQLRYKSCASP HGLVCVG +FLACSQLRD AAT+GS
Sbjct: 1   MVLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGS 60

Query: 61  VLYWSWFKPQVEVKSFPAEPIIALASNNEGTYIVGGGSSGDIYLWEVLSGKLLKKWHAHY 120
           VLYWSW KPQVEVKSFPAEPI+ALASN+EGTYIVGGG SGDIYLWEVLSG+LLKKWHAHY
Sbjct: 61  VLYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLVSGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNLPVTDIA 180
           RAVTCLVFSEDDSLLVSGSEDGC+RVWSL+TVFDDGWQREAKHLYEHSFTGHNLPVTDI 
Sbjct: 121 RAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           VGYGG NAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTVALNAKSPSNSDYGLHILSSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRANN 300
           YT ALNAK PS+SDYGLHIL S+SNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTR NN
Sbjct: 241 YTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 300

Query: 301 IIRVFKHSKGPVNNILIVRQQLLPKAQITSISQGSLRKHRSLLPPALAKFENSKDEDEDS 360
           +IRVF+HSKGPVNNIL+V+QQ LPK+Q  S SQGSLRKHR LLPPALAKFENSKDEDE +
Sbjct: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQ--STSQGSLRKHRPLLPPALAKFENSKDEDEYT 360

Query: 361 GVIIGLSGPPTELMDFSPLSSHVMDNQITELQQQGSAATGMELERLKLDYAKSKQMLEHW 420
           GVII  SGPP E   FS LSSHVMD+QITELQQQGSAATGMELERLK DY KSKQML+HW
Sbjct: 361 GVIIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGMELERLKHDYGKSKQMLQHW 420

Query: 421 RKMYDNLHQFCVDELLDGDDQTLN 445
           RKMYDNLHQFCV+ELLDG +QT N
Sbjct: 421 RKMYDNLHQFCVNELLDG-NQTKN 441

[Close]

BLAST of Spg016230 vs. ExPASy TrEMBL
Match: A0A6J1DDG0 (protein ROOT INITIATION DEFECTIVE 3-like OS=Momordica charantia OX=3673 GN=LOC111019080 PE=4 SV=1)

HSP 1 Score: 783.5 bits (2022), Expect = 4.7e-223
Identity = 376/443 (84.88%), Postives = 412/443 (93.00%), Query Frame = 0


Query: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDHAATSGS 60
           MVLVVASSSIDSGIGCWDLHTGAEQLRYKSCASP+HGL+CVG++FLACSQLRD AAT+GS
Sbjct: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSCASPSHGLICVGQQFLACSQLRDPAATAGS 60

Query: 61  VLYWSWFKPQVEVKSFPAEPIIALASNNEGTYIVGGGSSGDIYLWEVLSGKLLKKWHAHY 120
           +LYWSWFKPQVEVKSFPAE I+ LA+NNEGTYIVGGG SGDIYLWEVLSG+LLKKWH HY
Sbjct: 61  ILYWSWFKPQVEVKSFPAEAIMPLAANNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHGHY 120

Query: 121 RAVTCLVFSEDDSLLVSGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNLPVTDIA 180
           RAVTC+VFSEDDSLL+SGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNLP+TDI 
Sbjct: 121 RAVTCVVFSEDDSLLISGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNLPITDIV 180

Query: 181 VGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           VGYGGSN+IIISSSVDRTCKVWSLSKGKLLRNIIFPSI+DAIALDPGEHVFYGGGRDGKI
Sbjct: 181 VGYGGSNSIIISSSVDRTCKVWSLSKGKLLRNIIFPSIVDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTVALNAKSPSNSDYGLHILSSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRANN 300
           YT ALNAKSPS+SDYGLHIL SLSNQSKSVTSLAYC+SGNLLISGSEDGAI+VWDTR NN
Sbjct: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCASGNLLISGSEDGAIKVWDTRTNN 300

Query: 301 IIRVFKHSKGPVNNILIVRQQLLPKAQITSISQGSLRKHRSLLPPALAKFENSKDEDEDS 360
           IIRV KHSKGPVNNI+IVRQ+++PK  I S SQGSLRKHRSL+PP LAKFENSKDEDED+
Sbjct: 301 IIRVLKHSKGPVNNIIIVRQRVIPKPLINSSSQGSLRKHRSLVPPPLAKFENSKDEDEDT 360

Query: 361 GVIIGLSGPPTELMDF-SPLSSHVMDNQITELQQQGSAATGMELERLKLDYAKSKQMLEH 420
           G++IG+SG   E M F SPL+  VM+NQI +LQ+QG AATGMELER+K DY +S QML+ 
Sbjct: 361 GIVIGVSG---EFMGFSSPLTCDVMENQIAQLQKQGCAATGMELERVKRDYGRSMQMLQQ 420

Query: 421 WRKMYDNLHQFCVDELLDGDDQT 443
           WRKMYDNLH+FCV+EL+DGD  T
Sbjct: 421 WRKMYDNLHEFCVNELVDGDQNT 440

[Close]

BLAST of Spg016230 vs. TAIR 10
Match: AT3G49180.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 507.7 bits (1306), Expect = 9.6e-144
Identity = 257/439 (58.54%), Postives = 325/439 (74.03%), Query Frame = 0


Query: 2   VLVVASSSIDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDHAATSGSV 61
           + V+ASSSID GIG WDL TG EQL++K CASPAHGL  VGE+FLA SQL     TSGS+
Sbjct: 3   ITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQL-SARNTSGSI 62

Query: 62  LYWSWFKPQVEVKSFPAEPIIALASNNEGTYIVGGGSSGDIYLWEVLSGKLLKKWHAHYR 121
            YWSW KPQ EVKS+P EPI ALA+NNEGTY+VGGG SGDIYLWEV +GKLLKKWH HYR
Sbjct: 63  FYWSWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYR 122

Query: 122 AVTCLVFSEDDSLLVSGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGHNLPVTDIAV 181
           +VTCLVFS DDSLLVSGS+DG +RVWSL+ +FDD  +++   LYEH+F  H + VTDI +
Sbjct: 123 SVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVI 182

Query: 182 GYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIY 241
            YGG NA+IISSS DRTCKVWSLS+GKLL+NIIFPS+I+A+ALDPG  VFY G RD KIY
Sbjct: 183 DYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDSKIY 242

Query: 242 TVALNAKSPSNSDYGLHILSSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRANNI 301
             A+NA     S+YG  +L S+S + K++T LAYC+ GNLLISGSEDG + VWD ++   
Sbjct: 243 IGAINA----TSEYGTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVVCVWDPKSLRH 302

Query: 302 IRVFKHS----KGPVNNILIVRQQLLPKAQITSISQGSLRKHRSLLPPALAKFENSKDED 361
           +R   H+    KGPVNNI IVR+ ++  +  T +   S +   +L+PP L K+E   ++ 
Sbjct: 303 VRTLIHAKGSRKGPVNNIQIVRKTIVANSNKTQV---SWKSRGALIPPPLEKYERPVEDT 362

Query: 362 EDSGVIIGLSGPP-TELMDFSP-LSSHVMDNQITELQQQGSAATGMELERLKLDYAKSKQ 421
            D   I+ +  PP +++  +S  LS+ ++D Q+ ELQQQGSAAT ME+ERLKL+Y +S Q
Sbjct: 363 MDG--IVTVDPPPFSDVPVYSSFLSADLIDEQVKELQQQGSAATEMEMERLKLEYKRSLQ 422

Query: 422 MLEHWRKMYDNLHQFCVDE 435
           M E W+K Y+NL Q  ++E
Sbjct: 423 MNEQWQKNYENLLQVVMEE 431

[Close]

BLAST of Spg016230 vs. TAIR 10
Match: AT3G49660.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 83.6 bits (205), Expect = 4.5e-16
Identity = 59/213 (27.70%), Postives = 97/213 (45.54%), Query Frame = 0


Query: 87  NNEGTYIVGGGSSGDIYLWEVLSGKLLKKWHAHYRAVTCLVFSEDDSLLVSGSEDGCVRV 146
           N +   IV G     + +W+V +GK LK   AH   VT + F+ D SL+VS S DG  R+
Sbjct: 122 NPQSNMIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRI 181

Query: 147 WSLLTVFDDGWQREAKHLYEHSFTGHNLPVTDIAVGYGGSNAIIISSSVDRTCKVWSLSK 206
           W      D G      H  +      N PV+   V +  +   I+  ++D T ++W++S 
Sbjct: 182 W------DSG----TGHCVKTLIDDENPPVS--FVRFSPNGKFILVGTLDNTLRLWNISS 241

Query: 207 GKLLRNIIFP-----SIIDAIALDPGEHVFYGGGRDGKIYTVALNAKSPSNSDYGLHILS 266
            K L+           I  A ++  G+ +   G  D  ++   LN+K          +L 
Sbjct: 242 AKFLKTYTGHVNAQYCISSAFSVTNGKRI-VSGSEDNCVHMWELNSKK---------LLQ 301

Query: 267 SLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVW 295
            L   +++V ++A   + NL+ SGS D  +R+W
Sbjct: 302 KLEGHTETVMNVACHPTENLIASGSLDKTVRIW 312

[Close]

BLAST of Spg016230 vs. TAIR 10
Match: AT4G02730.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-14
Identity = 57/228 (25.00%), Postives = 103/228 (45.18%), Query Frame = 0


Query: 84  LASNNEGTYIVGGGSSGDIYLWEVLSG-KLLKKWHAHYRAVTCLVFSEDDSLLVSGSEDG 143
           LA +++  Y         + +W+  S  + LK    H   V C+ F+   +L+VSGS D 
Sbjct: 91  LAWSSDSHYTCSASDDCTLRIWDARSPYECLKVLRGHTNFVFCVNFNPPSNLIVSGSFDE 150

Query: 144 CVRVWSLLTVFDDGWQREAKHLYEHSFTGHNLPVTDIAVGYGGSNAIIISSSVDRTCKVW 203
            +R+W + T                    H++P++ +     GS  +I+S+S D +CK+W
Sbjct: 151 TIRIWEVKT-----------GKCVRMIKAHSMPISSVHFNRDGS--LIVSASHDGSCKIW 210

Query: 204 SLSKGKLLRNII---FPSIIDAIALDPGEHVFYGGGRDGKIYTVALNAKSPSNSDYG--- 263
              +G  L+ +I    P++            F     +GK   VA    +   S+Y    
Sbjct: 211 DAKEGTCLKTLIDDKSPAV-----------SFAKFSPNGKFILVATLDSTLKLSNYATGK 270

Query: 264 -LHILSSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRANNIIR 304
            L + +  +N+   +TS    ++G  ++SGSED  + +WD +A NI++
Sbjct: 271 FLKVYTGHTNKVFCITSAFSVTNGKYIVSGSEDNCVYLWDLQARNILQ 294

[Close]

BLAST of Spg016230 vs. TAIR 10
Match: AT2G47410.1 (WD40/YVTN repeat-like-containing domain;Bromodomain )

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-13
Identity = 57/204 (27.94%), Postives = 91/204 (44.61%), Query Frame = 0


Query: 113 LKKWHAHYRAVTCLVFSEDDSLLVSGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGH 172
           +KK   H  AV C +F      +++GS+D  V++WS+ T            L   S  GH
Sbjct: 229 IKKLRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA-----------LCLASCRGH 288

Query: 173 NLPVTDIAVGYGGSNAIIISSSVDRTCKVWSLSKG---KLLRNIIFPSIIDAIALDPGEH 232
              +TD+AV    +NA++ S+S D   +VW L  G    +LR       + AIA  P + 
Sbjct: 289 EGDITDLAV--SSNNALVASASNDFVIRVWRLPDGMPISVLRG--HTGAVTAIAFSPRQA 348

Query: 233 VFY---GGGRDGKI---------YTVALNAKSPSNSDYGLHILSSLSNQSKSVTSLAYCS 292
             Y       DG           +   +   SPS+++ G    +S ++QS  +   AY +
Sbjct: 349 SVYQLLSSSDDGTCRIWDARYSQWLPRIYVPSPSDANTG---STSNASQSHQILCCAYNA 408

Query: 293 SGNLLISGSEDGAIRVWDTRANNI 302
           +G + ++GS D   RVW     N+
Sbjct: 409 NGTIFVTGSSDSNARVWSASKPNL 414

[Close]

BLAST of Spg016230 vs. TAIR 10
Match: AT2G47410.2 (WD40/YVTN repeat-like-containing domain;Bromodomain )

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-13
Identity = 57/204 (27.94%), Postives = 91/204 (44.61%), Query Frame = 0


Query: 113 LKKWHAHYRAVTCLVFSEDDSLLVSGSEDGCVRVWSLLTVFDDGWQREAKHLYEHSFTGH 172
           +KK   H  AV C +F      +++GS+D  V++WS+ T            L   S  GH
Sbjct: 228 IKKLRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA-----------LCLASCRGH 287

Query: 173 NLPVTDIAVGYGGSNAIIISSSVDRTCKVWSLSKG---KLLRNIIFPSIIDAIALDPGEH 232
              +TD+AV    +NA++ S+S D   +VW L  G    +LR       + AIA  P + 
Sbjct: 288 EGDITDLAV--SSNNALVASASNDFVIRVWRLPDGMPISVLRG--HTGAVTAIAFSPRQA 347

Query: 233 VFY---GGGRDGKI---------YTVALNAKSPSNSDYGLHILSSLSNQSKSVTSLAYCS 292
             Y       DG           +   +   SPS+++ G    +S ++QS  +   AY +
Sbjct: 348 SVYQLLSSSDDGTCRIWDARYSQWLPRIYVPSPSDANTG---STSNASQSHQILCCAYNA 407

Query: 293 SGNLLISGSEDGAIRVWDTRANNI 302
           +G + ++GS D   RVW     N+
Sbjct: 408 NGTIFVTGSSDSNARVWSASKPNL 413

The following BLAST results are available for this feature:

BLAST of Spg016230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941447.1	2.5e-234	90.66	protein ROOT INITIATION DEFECTIVE 3 [Cucurbita moschata] >KAG6608496.1 Protein R...	[more]
XP_023521513.1	5.5e-234	89.98	protein ROOT INITIATION DEFECTIVE 3 [Cucurbita pepo subsp. pepo]	[more]
XP_022982251.1	1.3e-230	89.29	protein ROOT INITIATION DEFECTIVE 3 [Cucurbita maxima]	[more]
XP_038898957.1	2.2e-230	89.64	protein ROOT INITIATION DEFECTIVE 3 [Benincasa hispida]	[more]
XP_008452567.1	1.4e-229	89.41	PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Cucumis melo]	[more]

BLAST of Spg016230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M3B4	1.3e-142	58.54	Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1...	[more]
A0A1L8HX76	3.5e-42	32.50	WD repeat-containing protein 18 OS=Xenopus laevis OX=8355 GN=wdr18 PE=3 SV=1	[more]
Q9BV38	7.9e-42	32.82	WD repeat-containing protein 18 OS=Homo sapiens OX=9606 GN=WDR18 PE=1 SV=2	[more]
Q3SZD4	3.9e-41	33.13	WD repeat-containing protein 18 OS=Bos taurus OX=9913 GN=WDR18 PE=2 SV=1	[more]
Q499N3	7.4e-40	32.41	WD repeat-containing protein 18 OS=Rattus norvegicus OX=10116 GN=Wdr18 PE=2 SV=1	[more]

BLAST of Spg016230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FMG7	1.2e-234	90.66	protein ROOT INITIATION DEFECTIVE 3 OS=Cucurbita moschata OX=3662 GN=LOC11144674...	[more]
A0A6J1IYT8	6.1e-231	89.29	protein ROOT INITIATION DEFECTIVE 3 OS=Cucurbita maxima OX=3661 GN=LOC111481134 ...	[more]
A0A1S3BU36	6.8e-230	89.41	protein ROOT INITIATION DEFECTIVE 3 OS=Cucumis melo OX=3656 GN=LOC103493552 PE=4...	[more]
A0A0A0KZT0	1.7e-228	88.96	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G...	[more]
A0A6J1DDG0	4.7e-223	84.88	protein ROOT INITIATION DEFECTIVE 3-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of Spg016230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49180.1	9.6e-144	58.54	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G49660.1	4.5e-16	27.70	Transducin/WD40 repeat-like superfamily protein	[more]
AT4G02730.1	1.1e-14	25.00	Transducin/WD40 repeat-like superfamily protein	[more]
AT2G47410.1	1.2e-13	27.94	WD40/YVTN repeat-like-containing domain;Bromodomain	[more]
AT2G47410.2	1.2e-13	27.94	WD40/YVTN repeat-like-containing domain;Bromodomain	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020472	G-protein beta WD-40 repeat	PRINTS	PR00320	GPROTEINBRPT	coord: 135..149 score: 41.15 coord: 282..296 score: 40.4 coord: 190..204 score: 36.27
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 69..106 e-value: 1.8 score: 15.5 coord: 109..148 e-value: 2.2E-10 score: 50.5 coord: 256..295 e-value: 2.9E-7 score: 40.2 coord: 206..244 e-value: 200.0 score: 2.4 coord: 162..203 e-value: 3.4E-4 score: 29.9
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 167..203 e-value: 2.1E-4 score: 22.0 coord: 260..295 e-value: 1.1E-6 score: 29.3 coord: 110..148 e-value: 2.5E-7 score: 31.3
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 169..212 score: 10.107432
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 263..304 score: 15.821944
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 116..149 score: 14.084198
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 215..323 e-value: 1.6E-15 score: 59.1
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 2..214 e-value: 1.5E-33 score: 118.0
None	No IPR available	PANTHER	PTHR18763	WD-REPEAT PROTEIN 18	coord: 2..435
None	No IPR available	PANTHER	PTHR18763:SF0	WD REPEAT-CONTAINING PROTEIN 18	coord: 2..435
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 116..149 score: 11.65559
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 263..297 score: 12.156496
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 282..296
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 9..316

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg016230.1	Spg016230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030174	regulation of DNA-dependent DNA replication initiation
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005656	nuclear pre-replicative complex
cellular_component	GO:0097344	Rix1 complex
molecular_function	GO:0005515	protein binding