Spg016198 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg016198
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribonuclease H
Location	scaffold9: 45041497 .. 45044904 (-)
RNA-Seq Expression	Spg016198
Synteny	Spg016198

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGCAGAGTACTGAGATGGAGAAAACAAGGAAAGATATTGAGGAGTTACGAGAAAAAATGGATGCCATTCTTGTCGCCCTAGAAAGAGGCAAAATAATACCTGATATTGCTCAGTCCAGCCATACAATGAACGACCCTCCAATCCGGCAATCAACAGAGGGTACTACTCCAAAATATCATCCATTGTACAATATTCCAGTAGAGCAGCACCCGTTTCCATTTTTCAAGAATGAGCAAGTGCCTGTACACAATCAACCTGGATTTTCACTACCCACAGAGATACCTCCCAAGGTGACCATTACAGTTCCCAATTTAGATGATCCTGAAATCAGAAAAGAGCTAACGGGAGGTGAGAAAGTCTCTTCTAGTGAAAAGCTTGAAGTCCTGGAGGAAAGATTAAGGGCAGTAGAAGGAACAGACGTCTTCGGAAATATAGATGCGACCAAGCTATGCTTGGTACCAGATGTAATCCTCCCTCCAAAATTCAAGGTGCCCGAGTTTGAAAAGTATGATGGAGCATCCTGTCCTAAGAACCATCTCATCATGTATTGTAGGAAGATGGCAGCATACGTCCAAAATGACAAGCTGTTAATTCATTGCTTCCAGGACAGTCTTACTGGTCCAGCATCTCGATGGTATATGCAGTTAGACAGCACTCATATATGTTCATGGAAGAATCTAGCCGATTCATTTTTAAAGCAATATAAGCACAACATAGATATGGCTCCTGACCGTTTAGACCTCCAGAGGATGGAAAAGAAGAGCACAGAAAGCTTTAAAGAGTACGCCCAAAGGTGGAGGGATACTGCTGCTCAGGTGCAACCACCTTTAGCTGATAAGGAGCTGTCGACCATGTTTATTAATACTCTCAAATCTCCTTTCTATGATAAGATGATTGGGAGTGCCTCTACCAATTTCTCTGACATAATGACAATTGGAGAGAGAATCGAGTACGGAATTAAGCATGGAAAGATAACTGATACGGCTGGATCATCAACAACGAAAAAGGGGGTTCCATCGAAGAAAAAAGAGGGAGAAGTTCAGATGATTGGTTTCAATTCAAGACAACCATACCCTAATGCCGGAGTGCCACAATATCACTATCCACCTCCATATGTTTACCCTCAACCCTATATCAATAATACGTCAGCCCAATATCCATCCCCTTACGTCCAAAATCCTCGTCCTACTCAAGGCTACCAGCCTCGGAATCAACATAACACTCCTTATGTCCAAGGACACCAAAACAATAAAGGCGTCCGTAGACAGACTCATTTTGATCCGATTCCGATGACATATACCGAACTTCTACCCCAACTCTTCCAGAATAATCAGCTGGCACCCGTACCAATAGACCCAGTAAAGCCACCTTACCCAAAGTGGTATGACCCAAATGCCCGTTGCGACTACCATGCAGGAGCAATTGGACATTCCACTGAAAACTGTACTGCACTCAAGCATAGGGTGCAAGCATTGATAAAGGCAGGATGGTTGAACTTTAAGAAAGAAAATGGTCCAGATGTCAACAACAATCCTCTGCCAAACCATCAGAATGCACAAGTAAATGCGATAGAGGTTCATGGAGCTGATTTAAGAAAGAATGCTGAGAGAATAGTGACTCCCATGGGAGAACTATTCGAAATATTATTGAATAATGGATACATTGGAGTAGAACGCCTCCAATTAGATTTGGGTGTCAGAGCATACGATGACAGTTTGATGTGTTCTTATCACACTGGGGCAAAAGGGCATTCTATCGACCAATGTCCTCATTTTCGTTTGAAGGTCCAGGAGTTGTTAGATTCACATTTTTTAACAGTTTCTCAAAAGATGACTCAGCTCCCTCAGTATGGGGAAGTTGATATTATAGAAGAATGCTCAAGGTTGTCTCTCAAGCCAAAACCGTTAACAATATCTTATCGCGAGAAGCCCAGTACCCCAAATTCCAAGCCAAGACCGATTACCATCCAGATTCCGACTCCCTTTGAATATAAAAGTTCAAAAGCAGTACCTTGGAACTATGAATATAAGGTAACTGTTGATTCTGAACCCCTTCCAATCCATAATATCAGTGGGATAGGAGGTCTAACACGAAGCGGGAAGTGCTATACACCAGAAGACCTATTGAAACCCAAGGGTAAAGAAAAAGGAAAAGCCAAGATCACTGAAGATATCAAGGAGAAAATAGAAGAGCCCATTGTAGCGAAGAACCTAGATGTTAAACAGCCAGCATCTGAAGAGGACATCCAAGAATTTTTGAAGTTGGTTAAGCAAAGTGATTATAAAGTGGTTGAACAGTTAGGTCGAACCCCTGCAAAGATTTCCATACTGGCTTTGTTACTGGCTTCAGATACGCATCGTAAGACTTTGTTGGACATTTTGAATCAAACTTATGTTCCGCAGGATATTACGGTGGACAACTTGGATAACATTGTTGGAAACATAACTGCATCCAGTTCAGTAACCTTCACAGATGATGAGTTACCACCAGAAGGCACCGGACACACTAAAGCCTTGCACATTACAGTTAAGTGCAAAAATTTTGCTGTGGCAAAAGTTCTAGTTGATAATGGTTCCTCCTTGAACATAATGCCTAAATCCACGTTGGAGAAATTGCCTGTTGATATGTCTCATATAAGGCCCAGCACTATGATCGTACGAGCTTTTGATGGGGCACGTAGTGAAGTTGTTGGAGACATAGAAGTGCCCATCCAGATAGGTCCATGCACCTTCGATATAACCTTTCAGGTTATGAACATTAATTCGGCCTACAGCTTCTTGTTAGGGCGTCCCTGGATTCACTCAGCTGGAGTGGTCCCATCATCATTACACCAAAAACTTAAATTTGTGGTCGACCGCAAACTAGTAATCATATCTGGGCAAGAGGATATCTTAGTGTCAAGACCCTCTTCAATGCCCTACATAGAAGCAGCAGAAGAGGTTTTTGAGTCATCATTTCAAGCTTTTGAGATTGCAAATGCCACCACTTTATACGGAGAGATAGGGAAAATGGAGCAGCAACTTTCAAAACTCTCCTTAACAGGAAGCAACCAAAGCCTCGAAAATTTGTTGAATATGTCGAAAAATATGAAGAGGTTTGGTTTGGGGTATAAACCAAGCAAAAAAGATATGATTAAAGCACACAGGCAGGAGAAAGAAAAACGACTGGCTAGATTGGAGAACCGTGAGCCGAAGTATCAAATGAATATCATTCCTCATCTTCATGATACCTTCATCTTTGCTGGAATAATTCATTCGGAATCTCAAGACCCTGCAGTCATGGCTATAATCGAACAGAACAAAGAAGGCGGTCCCTTAGTTTATCTGTGCCCAGAAGACTTTGAACTCAATAATTGGACTGTAATGGAGCTACCATCATTTGTTAATGAGATATCAAAGTAA

mRNA sequence

ATGGAAGAGCAGAGTACTGAGATGGAGAAAACAAGGAAAGATATTGAGGAGTTACGAGAAAAAATGGATGCCATTCTTGTCGCCCTAGAAAGAGGCAAAATAATACCTGATATTGCTCAGTCCAGCCATACAATGAACGACCCTCCAATCCGGCAATCAACAGAGGGTACTACTCCAAAATATCATCCATTGTACAATATTCCAGTAGAGCAGCACCCGTTTCCATTTTTCAAGAATGAGCAAGTGCCTGTACACAATCAACCTGGATTTTCACTACCCACAGAGATACCTCCCAAGAGAATAGTGACTCCCATGGGAGAACTATTCGAAATATTATTGAATAATGGATACATTGGAGTAGAACGCCTCCAATTAGATTTGGGTGTCAGAGCATACGATGACAGTTTGATGTGTTCTTATCACACTGGGGCAAAAGGGCATTCTATCGACCAATGTCCTCATTTTCGTTTGAAGGTCCAGGAGTTGTTAGATTCACATTTTTTAACAGTTTCTCAAAAGATGACTCAGCTCCCTCAGTATGGGGAAGTTGATATTATAGAAGAATGCTCAAGGCAGGAGAAAGAAAAACGACTGGCTAGATTGGAGAACCGTGAGCCGAAGTATCAAATGAATATCATTCCTCATCTTCATGATACCTTCATCTTTGCTGGAATAATTCATTCGGAATCTCAAGACCCTGCAGTCATGGCTATAATCGAACAGAACAAAGAAGGCGGTCCCTTAGTTTATCTGTGCCCAGAAGACTTTGAACTCAATAATTGGACTGTAATGGAGCTACCATCATTTGTTAATGAGATATCAAAGTAA

Coding sequence (CDS)

ATGGAAGAGCAGAGTACTGAGATGGAGAAAACAAGGAAAGATATTGAGGAGTTACGAGAAAAAATGGATGCCATTCTTGTCGCCCTAGAAAGAGGCAAAATAATACCTGATATTGCTCAGTCCAGCCATACAATGAACGACCCTCCAATCCGGCAATCAACAGAGGGTACTACTCCAAAATATCATCCATTGTACAATATTCCAGTAGAGCAGCACCCGTTTCCATTTTTCAAGAATGAGCAAGTGCCTGTACACAATCAACCTGGATTTTCACTACCCACAGAGATACCTCCCAAGAGAATAGTGACTCCCATGGGAGAACTATTCGAAATATTATTGAATAATGGATACATTGGAGTAGAACGCCTCCAATTAGATTTGGGTGTCAGAGCATACGATGACAGTTTGATGTGTTCTTATCACACTGGGGCAAAAGGGCATTCTATCGACCAATGTCCTCATTTTCGTTTGAAGGTCCAGGAGTTGTTAGATTCACATTTTTTAACAGTTTCTCAAAAGATGACTCAGCTCCCTCAGTATGGGGAAGTTGATATTATAGAAGAATGCTCAAGGCAGGAGAAAGAAAAACGACTGGCTAGATTGGAGAACCGTGAGCCGAAGTATCAAATGAATATCATTCCTCATCTTCATGATACCTTCATCTTTGCTGGAATAATTCATTCGGAATCTCAAGACCCTGCAGTCATGGCTATAATCGAACAGAACAAAGAAGGCGGTCCCTTAGTTTATCTGTGCCCAGAAGACTTTGAACTCAATAATTGGACTGTAATGGAGCTACCATCATTTGTTAATGAGATATCAAAGTAA

Protein sequence

MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSHTMNDPPIRQSTEGTTPKYHPLYNIPVEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKRIVTPMGELFEILLNNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTVSQKMTQLPQYGEVDIIEECSRQEKEKRLARLENREPKYQMNIIPHLHDTFIFAGIIHSESQDPAVMAIIEQNKEGGPLVYLCPEDFELNNWTVMELPSFVNEISK

Homology

[Close]

BLAST of Spg016198 vs. NCBI nr
Match: XP_022157796.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 5.8e-16
Identity = 57/140 (40.71%), Postives = 79/140 (56.43%), Query Frame = 0


Query: 69  VEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKRIVTPMGELFEILLNNGYIGVERLQLDLG 128
           V ++P    +N Q+      G    +++   R  TP  ELFEILL +GY+ VE L  +L 
Sbjct: 423 VSKNPLSNHQNVQINAIECQGIESKSKVADIR--TPKEELFEILLGSGYVSVEYLCPNLK 482

Query: 129 VRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV--SQKMTQLPQYGEVDII 188
            + YD+SL C +H GAKGHS++QC  FR+KVQELLDS  LTV  S +   +    +V + 
Sbjct: 483 YKEYDESLTCPFHAGAKGHSLEQCNSFRMKVQELLDSKILTVANSHQKKGINVVEDVSVA 542

Query: 189 EECSRQEKEKRLARLENREP 207
           E  S   K KRL    + +P
Sbjct: 543 EGSSDALKPKRLTIFYSEKP 560

[Close]

BLAST of Spg016198 vs. NCBI nr
Match: XP_022157796.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 5.2e-09
Identity = 44/101 (43.56%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 1   MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSHTMND------------P 60
           ME+Q  E EKTRKDIEELREK+D I + LE+GK   D A SS+ +++            P
Sbjct: 1   MEDQKAEQEKTRKDIEELREKLDXIXLXLEKGKATADPATSSNPIHEPQETPPYPPGYGP 60

Query: 61  PIRQSTEGTTPK---YHPLYNIPVEQHPFPFFKN-EQVPVH 86
           P+R   EG  P+   Y+PLY++P+ Q+P  F K  +Q+P +
Sbjct: 61  PLRPVAEGFMPQYTTYNPLYDVPIGQYPHTFVKGAQQIPTN 101

HSP 2 Score: 95.5 bits (236), Expect = 7.6e-16
Identity = 54/125 (43.20%), Postives = 75/125 (60.00%), Query Frame = 0


Query: 69  VEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKRIVTPMGELFEILLNNGYIGVERLQLDLG 128
           V ++P P  +N Q+           +++   R  TPM ELFEILL +GY+ VE L  +L 
Sbjct: 430 VSKNPLPNHQNVQINAIECQEIESKSKVADIR--TPMVELFEILLGSGYVSVEYLCPNLK 489

Query: 129 VRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTVSQKMTQLPQYGEVDIIEE 188
            + YD+SL C +H GAKGHS++QC  FR+KVQELLDS  LTV+       Q   ++I+E+
Sbjct: 490 YKGYDESLTCPFHAGAKGHSLEQCNSFRMKVQELLDSKILTVANS----HQKKGINIVED 548

Query: 189 CSRQE 194
            S  E
Sbjct: 550 VSVAE 548

[Close]

BLAST of Spg016198 vs. NCBI nr
Match: XP_022155098.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia])

HSP 1 Score: 92.8 bits (229), Expect = 4.9e-15
Identity = 57/149 (38.26%), Postives = 78/149 (52.35%), Query Frame = 0


Query: 69  VEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKRIVTPMGELFEILLNNGYIGVERLQLDLG 128
           V+ +P P  KN Q+      G    +++    I TPM  LFEIL  +GY+ +E L  D+ 
Sbjct: 532 VKNNPLPNHKNVQINAVECQGIESRSKV--SEITTPMQXLFEILWXHGYMSMEHLCPDIR 591

Query: 129 VRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTVSQKMTQLPQYGEVDIIEE 188
              YD++L C YH GA+GH ++QC  F+ KVQELLD   LTV    TQ  Q   +D++E 
Sbjct: 592 CERYDENLTCPYHAGARGHPLEQCSCFKEKVQELLDLKILTV----TQSHQEQRIDVVEY 651

Query: 189 CSRQE------KEKRLARLENREPKYQMN 212
            S  E      K K L  L   +P+   N
Sbjct: 652 VSTAESSSAAYKPKPLTVLYREKPEVPSN 674

[Close]

BLAST of Spg016198 vs. NCBI nr
Match: XP_022155098.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia])

HSP 1 Score: 59.7 bits (143), Expect = 4.6e-05
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 2  EEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSHTMNDPPIRQSTEGTTPKY 61
          +++ +E EKTRKDIEELREK+DAIL+ALE+GK    IA++S+ +++PP  Q   G  P +
Sbjct: 3  DDRKSEQEKTRKDIEELREKLDAILLALEKGK---TIAETSNPIHEPPTPQFPPGFEPSF 61

Query: 62 HP 64
           P
Sbjct: 63 RP 61

HSP 2 Score: 90.5 bits (223), Expect = 2.4e-14
Identity = 56/145 (38.62%), Postives = 76/145 (52.41%), Query Frame = 0


Query: 69  VEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKRIVTPMGELFEILLNNGYIGVERLQLDLG 128
           V  +P P   N Q+           +++    I TPM ELFEILL +GY+ VE L  +L 
Sbjct: 365 VSNNPLPNHXNVQINAIECQEIESKSKVAD--ITTPMEELFEILLGSGYVSVEYLCPNLK 424

Query: 129 VRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTVSQ-------KMTQLPQYG 188
            + YD+SL C +H GAKGH+++QC  FR+ VQELLDS  LTV+         + +     
Sbjct: 425 YKGYDESLTCPFHAGAKGHALEQCNSFRMIVQELLDSKILTVANSHQKKGINVVEDVSVA 484

Query: 189 EVDIIEECSRQEKEKRLARLENREP 207
           E  I E  S   K KRL    + +P
Sbjct: 485 EGSIAEGSSDALKPKRLTIFYSEKP 507

[Close]

BLAST of Spg016198 vs. NCBI nr
Match: XP_022155744.1 (uncharacterized protein LOC111022791 [Momordica charantia])

HSP 1 Score: 89.0 bits (219), Expect = 7.1e-14
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 193 EKEKRLARLENREPKYQMNIIPHLHDTFIFAGIIHSESQDPAVM-AIIEQNKEGGPLVYL 252
           EK KRL+R EN E  Y   I+P L  +F  AG IH E  + +V+ A+ E+ ++ GP VYL
Sbjct: 453 EKAKRLSRFENEERDYPRRIVPPLTHSFRSAGTIHQEYDESSVVAAVTEEREQVGPFVYL 512

Query: 253 CPEDFELNNWTVMELPSFVNEISK 276
           CP+ FEL+NW+V+ELPSFVN   K
Sbjct: 513 CPDGFELSNWSVIELPSFVNNKXK 536

[Close]

BLAST of Spg016198 vs. ExPASy TrEMBL
Match: A0A6J1DZ90 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.8e-16
Identity = 57/140 (40.71%), Postives = 79/140 (56.43%), Query Frame = 0


Query: 69  VEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKRIVTPMGELFEILLNNGYIGVERLQLDLG 128
           V ++P    +N Q+      G    +++   R  TP  ELFEILL +GY+ VE L  +L 
Sbjct: 423 VSKNPLSNHQNVQINAIECQGIESKSKVADIR--TPKEELFEILLGSGYVSVEYLCPNLK 482

Query: 129 VRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV--SQKMTQLPQYGEVDII 188
            + YD+SL C +H GAKGHS++QC  FR+KVQELLDS  LTV  S +   +    +V + 
Sbjct: 483 YKEYDESLTCPFHAGAKGHSLEQCNSFRMKVQELLDSKILTVANSHQKKGINVVEDVSVA 542

Query: 189 EECSRQEKEKRLARLENREP 207
           E  S   K KRL    + +P
Sbjct: 543 EGSSDALKPKRLTIFYSEKP 560

[Close]

BLAST of Spg016198 vs. ExPASy TrEMBL
Match: A0A6J1DZ90 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.5e-09
Identity = 44/101 (43.56%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 1   MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSHTMND------------P 60
           ME+Q  E EKTRKDIEELREK+D I + LE+GK   D A SS+ +++            P
Sbjct: 1   MEDQKAEQEKTRKDIEELREKLDXIXLXLEKGKATADPATSSNPIHEPQETPPYPPGYGP 60

Query: 61  PIRQSTEGTTPK---YHPLYNIPVEQHPFPFFKN-EQVPVH 86
           P+R   EG  P+   Y+PLY++P+ Q+P  F K  +Q+P +
Sbjct: 61  PLRPVAEGFMPQYTTYNPLYDVPIGQYPHTFVKGAQQIPTN 101

HSP 2 Score: 95.5 bits (236), Expect = 3.7e-16
Identity = 54/125 (43.20%), Postives = 75/125 (60.00%), Query Frame = 0


Query: 69  VEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKRIVTPMGELFEILLNNGYIGVERLQLDLG 128
           V ++P P  +N Q+           +++   R  TPM ELFEILL +GY+ VE L  +L 
Sbjct: 430 VSKNPLPNHQNVQINAIECQEIESKSKVADIR--TPMVELFEILLGSGYVSVEYLCPNLK 489

Query: 129 VRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTVSQKMTQLPQYGEVDIIEE 188
            + YD+SL C +H GAKGHS++QC  FR+KVQELLDS  LTV+       Q   ++I+E+
Sbjct: 490 YKGYDESLTCPFHAGAKGHSLEQCNSFRMKVQELLDSKILTVANS----HQKKGINIVED 548

Query: 189 CSRQE 194
            S  E
Sbjct: 550 VSVAE 548

[Close]

BLAST of Spg016198 vs. ExPASy TrEMBL
Match: A0A6J1DM29 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia OX=3673 GN=LOC111022231 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.4e-15
Identity = 57/149 (38.26%), Postives = 78/149 (52.35%), Query Frame = 0


Query: 69  VEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKRIVTPMGELFEILLNNGYIGVERLQLDLG 128
           V+ +P P  KN Q+      G    +++    I TPM  LFEIL  +GY+ +E L  D+ 
Sbjct: 532 VKNNPLPNHKNVQINAVECQGIESRSKV--SEITTPMQXLFEILWXHGYMSMEHLCPDIR 591

Query: 129 VRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTVSQKMTQLPQYGEVDIIEE 188
              YD++L C YH GA+GH ++QC  F+ KVQELLD   LTV    TQ  Q   +D++E 
Sbjct: 592 CERYDENLTCPYHAGARGHPLEQCSCFKEKVQELLDLKILTV----TQSHQEQRIDVVEY 651

Query: 189 CSRQE------KEKRLARLENREPKYQMN 212
            S  E      K K L  L   +P+   N
Sbjct: 652 VSTAESSSAAYKPKPLTVLYREKPEVPSN 674

[Close]

BLAST of Spg016198 vs. ExPASy TrEMBL
Match: A0A6J1DM29 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia OX=3673 GN=LOC111022231 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-05
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 2  EEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSHTMNDPPIRQSTEGTTPKY 61
          +++ +E EKTRKDIEELREK+DAIL+ALE+GK    IA++S+ +++PP  Q   G  P +
Sbjct: 3  DDRKSEQEKTRKDIEELREKLDAILLALEKGK---TIAETSNPIHEPPTPQFPPGFEPSF 61

Query: 62 HP 64
           P
Sbjct: 63 RP 61

HSP 2 Score: 90.5 bits (223), Expect = 1.2e-14
Identity = 56/145 (38.62%), Postives = 76/145 (52.41%), Query Frame = 0


Query: 69  VEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKRIVTPMGELFEILLNNGYIGVERLQLDLG 128
           V  +P P   N Q+           +++    I TPM ELFEILL +GY+ VE L  +L 
Sbjct: 365 VSNNPLPNHXNVQINAIECQEIESKSKVAD--ITTPMEELFEILLGSGYVSVEYLCPNLK 424

Query: 129 VRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTVSQ-------KMTQLPQYG 188
            + YD+SL C +H GAKGH+++QC  FR+ VQELLDS  LTV+         + +     
Sbjct: 425 YKGYDESLTCPFHAGAKGHALEQCNSFRMIVQELLDSKILTVANSHQKKGINVVEDVSVA 484

Query: 189 EVDIIEECSRQEKEKRLARLENREP 207
           E  I E  S   K KRL    + +P
Sbjct: 485 EGSIAEGSSDALKPKRLTIFYSEKP 507

[Close]

BLAST of Spg016198 vs. ExPASy TrEMBL
Match: A0A6J1DR66 (uncharacterized protein LOC111022791 OS=Momordica charantia OX=3673 GN=LOC111022791 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.4e-14
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 193 EKEKRLARLENREPKYQMNIIPHLHDTFIFAGIIHSESQDPAVM-AIIEQNKEGGPLVYL 252
           EK KRL+R EN E  Y   I+P L  +F  AG IH E  + +V+ A+ E+ ++ GP VYL
Sbjct: 453 EKAKRLSRFENEERDYPRRIVPPLTHSFRSAGTIHQEYDESSVVAAVTEEREQVGPFVYL 512

Query: 253 CPEDFELNNWTVMELPSFVNEISK 276
           CP+ FEL+NW+V+ELPSFVN   K
Sbjct: 513 CPDGFELSNWSVIELPSFVNNKXK 536

The following BLAST results are available for this feature:

BLAST of Spg016198 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157796.1	5.8e-16	40.71	LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]	[more]
XP_022157796.1	5.2e-09	43.56	LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]	[more]
XP_022155098.1	4.9e-15	38.26	LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica ch...	[more]
XP_022155098.1	4.6e-05	51.61	LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica ch...	[more]
XP_022155744.1	7.1e-14	51.19	uncharacterized protein LOC111022791 [Momordica charantia]	[more]

BLAST of Spg016198 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg016198 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DZ90	2.8e-16	40.71	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1	[more]
A0A6J1DZ90	2.5e-09	43.56	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1	[more]
A0A6J1DM29	2.4e-15	38.26	LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia...	[more]
A0A6J1DM29	2.2e-05	51.61	LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia...	[more]
A0A6J1DR66	3.4e-14	51.19	uncharacterized protein LOC111022791 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of Spg016198 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..28
None	No IPR available	COILS	Coil	Coil	coord: 191..211

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg016198.1	Spg016198.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid