Spg016094 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg016094
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	ubiquitin extension protein 1
Location	scaffold6: 42708473 .. 42713382 (-)
RNA-Seq Expression	Spg016094
Synteny	Spg016094

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTCTCTAATCCCACCCGTTTCTCCCTCAGTCCCGATCTTCTTCTGACAGCAAGCTCAACAGCAGCATGTAGAAGTCATTTATGCGTCGCTCGGCTCGTGGGTCACCTTGGATTTGTGTGGGTCAGAGCGAACACCAAGCTTTTATCCCAATTTCTACCATTTCAAGGGAACTCGGCTGTGAGTAAGTGAGACAGAGCAAGGTCTAGTTAAATTAAAATGAAAACACACTGAAAAATTGTTGTGTACATTGAAACACACTCCTTTTCGATTCACTTTCGATTTCTTCAAAGCAACGTTGCCCCATCTACTCATTTTTCTTCATCAATTTCCTAGGTTTGAAGAAACATGCTGAATTTTTTCTCTCCTTCGAAGCAAGAAAAGGGCACTGAGCTTGAAAATTTGTCTCCCCTTCGAAGAAACCCGCATCAACGTCCCCTTCAACTTTAGGTAAATCCTCCTCTTGTTTTGGCCTTCACATCTTTGAGAACTTAAATGCATTGGAGTTTATTTTTTTTTTTTACTATTGTTGAACTTCATTGTCATTGTGAGTATATGACAACTTTGAAAAAGAATTCAAAGGTGTTTGCATATGTGATATTGTGGGTTTTTTACAGTTTTGAAAAAGAAAAAGTCAGTATCAATATCTTCCATAGGACTCTCACGGTGCGAACTAAGGGCAGCGACCGACGGAAACATTGACACGCTGATGTGTCATTGTGAGTATTGCATGAGTGAGATTTTTCATTTTGCTACATTGCCATAGCTTTCCCCTTTCATTAGTTATACTTCAATATCTTAATTTGCTTACTAATTTCCATGTGTTTTCGGTTAACTACTTCCCATTTTACTCATTCAAGACAGGGTTATGGAAGAAACGACCTCTGATTACTCAATTTGCCCACCTCAGATTATTGCTTTTATATGCCTAGTTTTCTTTTTTCCATGTTTACTCTTACTTTAACCTTGCAAATGTCCTCTCTTATGGATAAATGATTATGTGAAAAGCTTTATAAGTATTTAATTTAATATGGATTGGAGAAGAAAATGAACAAAAAGGAAATAAAAATCGCGTCTGATTAGGAGTTGGAAGTTGGGTGGGTAAATCTCTTCTGTCTATTACTTTAAAATTTGTATTGGGTCATGGAAAGAAAATAATAAAAGAAGGAGAAAACAGTGGAAGTTTTTTGAATTGAAGTCAAAAGAAGTGAGGATTCTTTTTTATTATTTTGTTCCAAAGTTAATGTATTGTGGTAGAAGATGTTTGGACTGATTTTCAGATGGATTGTTTTGTGGTCTTTCTTAATGATCTTTTTAGGATTTTAGGGGAATTTTGAGTGTGCTCAGATTTTCTCCACTTCCTTTTGCACCATGGTGATATGGGGTCTATGTTAAAAGATATACCTCGTTCTTGTGTTTTTTATGTAAAAAAACTAGTGAATAACTAGTCTGATTGACGACTCTGGCTATGTTTAACTTAACATACAATTGTTTTTTGCTTCTTCTATTGTTTGTTTAACTTTGCTCGCATTGTTTGTAGTTACTCTCTATTTGTAGTGTGTCGTACATTTGGCTTCATGTTAAATACAATTCTCCTTCCTAATACGAAATTTTTAACATTTGAAGGATGAACTTGGGACCTAGACTATTACTAATGGTATGTTTTCTTACTCTTATTTTTGCAATCTTTGTAGAACCCACTCTGCACTTAGTGCTCAAGCTTCTAGACAGTACTATTGAGTCATTTTTAATGTCATTGGATAGGAAGTACAGTGAGGATAAGATAATCTGCTACAAGTAAGCTTCAATATGCTAATTAATTGCAAAAAAAAAAAAAAAGTGTGTTATTCTTCTATATGAACTATGTTTGTTGTTTTCTTTTGCAATAACATTATATATGAAGTTGGACATGGTGGGTGGTTTTATCTTATTTCTAACATCAATTCTTCTAAATAGTTCAATGTCCTACTCTTGTTGATCAATTTCTTGTTCATAAAGAAGTCAAACTGCGAAATGACTTTAGAGTTTTACATCTTGTATTACAGCAGATTTTTAACTAATTTTTCCTATAACTTTTGGTCTGAAGTAATTCTTTTGTATAATAAACATTTAGAATCAAAACTAGTAACAATAAAAAGGGTATAAATTTTAAAAATACTTGGAACTCATTGGGTTATTATTAAGGAGTTTGATGTGAAATTTCTTCACTATATCCAAGCGACTCATCCCATTTTGGTTAAAAATGTTGTTGCTGATAGTTGATTTGAGTGTTCAAATTAAGTGAATTTACAAGCTCTGTTTTTCTGCTAAAGAATTTAGGACATAATAAAACATTTTAATGTTTTTTTTCTTATGAATTGAAAGTTGATAATGTCATCGCCAAATTATACTTTTACTTTCTTTTGTTTATTATTTGTAAGGTTTAAGTGATGGTGCTAGCTCTGTAATAAATAAGGGCTACTCCAACTCCACAATGGAAAACCTTGCTTGAACCTTGCCAAATCCCTAGAAGTATGTTTCCAGTTGATTCGAAACTAGATCTTTTATTTGTCATTATAACAAACAAATGGTATACTTTTTATTTGTGTTTCTTAACAATATTAAAGGGGAAGGAAAGGATTTTGTTACTACATCTTTTATTTTAACCTTCAATTTTAGGTAAGCAACTTTCGATCTTAATCTATCACTTTTACCATTGTCTAATTCTCTGAACAAAAGTCAAAAGATAAAGTTTGAGTCATCTTAAATATTTTAAGAAACTAAAGTGTTCAATGCTAATGCAAAGGAGCTTCAAGGCATTATATTTCTTGAAGTTTGTCTAGGACAATTGGAAACCTCTGAAATCCCTATCGTCCATATTCGAGCATATCTAATTGTAAGTTCAAAATTGTTTCCATTCAAGTCTTACTTTCCTTATAGTTTCATACATTTGCTTAGACTCTTATCATGTAGAAAAAAAAATGAAATCTTGTTGAAATCATGGTGAAATTTATTTCTTTCTAGGATGATATGTCTTCCTCTTTCTTTGATTATTTTAGGTGATGTCCTGAGCTGTTTTGTTGAGACTACTCAGGCTAGAGTTTGTGCTCTTCAGTTTCTTCCTCATTGCAAAAGAAATTCTAGTTAGAAAGATTTCAAAAGTTCTTTGACTGGTTTGATCACTTCAAGTCCGATAGTTTAAAAGTTTTTTCTTGGTGTTCTTTTTCAAAGCCTTTTGATGGATTTTCTTTTTAGAATATTTGTTTTCATTGAGATATTTTTCCCTTTTGTTTTCTTTGTTGTTCTTGTTTCACTCCCATGTGGAGTTTGTATCCTTTGAGCATTAGTCTCTTTTCATTTATTCAATGAAATGTTTTGTTTTTTGTTAAAAAAAAAAAAAAAAACTAAGATTCGTTCTTGATGGAAAATTTGATGAAGTGTCCATGGAGATGCTCTAACTTAGGAGTTGATGTGTCACTCATTTTGATGGATGTATGTGACCGTCATAAACTAATTTTGATAGGAGAATTTTATTTTCTTTGACAGTAGAATTTTGTTTTGACAACATTTCCATTTTAAGTAGTGAGTCAAGTGTCTTGAGCCTCAGTAACTTGTTCTTATTCCTTTGAAAAGAGTAAATCAGTTTCTTATTCTTTACCTATTAATTTTTTGACAAGATATTCTTTACATGTTAGTTCATAAAGATTTTAGTTTTCTTTCCTTGTATTTATGATTTTGATTGGTGGCCATTGAAGAATCATGTTGTCACCTAGATGGAAATATCAATTCTCTTACTTTTAATAAAATTGCTTGTGATTCAAAGTTAGAGTTATAGCCTTTGGTCAAAAAATAAATTGTAAATAGTTTTGAGAAATTTGTGTAAGCCTCATTGCATGATAAAGATTTTACAAAATTTTAAAGAGTGAGCTAGTAGTTATTGTAAATTGTTTTGAGAAATTTGCATAAGCCTCATTCCATATGTCCATTTACCATTTTACCCAAACTTACTTTGGAGTATTATTCAATTCTCTTTTGCATAAAGAAAATGTTGGGCGCAGCAGGAGGTGCAAGTCTCGCATCGGGATCCAGCACAAAGTCACAAAGGAGGATGCCATGAAGTGGTTCCAGGTGAAATATGAAGGTGTGATTCTTAACAAGTTGTAGCAAATCGCTAGTTAAGCTCCAGAGGGATTTTCCCAAATAGTTTTGAAGTTATTTGCGTTCAATTCTTTGTCTTCTCCTAATGTTGTTCATTAGCTTTTCTTATCAACCATTCATGCAGAGCCCTAACTCCATTGTCTCCTTTACCGTGCGACAACATCGAATCTAAGAAGATCATCACTTGCGCCTACTAGCACTTGAAATTCTAGGTATTTGATTTAAGCACCCAATGGTGTATTTTTTTTCTTTCTTATAACCTTTCCTTTGTTTAAACTTTTCCTCTTCACTCAATGCTAACAACCAATGGTGTATTTTAGCAACCAATGCTAGCACTTTTTGGTTTGATTCACCCGTGATCTTCCCTTTGTTTTCTTTTTCTCTACTTTGATATTTACTCTTTAAGTGTTCTGGTTGCTTGTTCATTGATATAAGTGTTTTTGTTGTTTATATTTGTTTATTCTTAGGTACTTTAGTGGATGAAGTGGCTAATACTGTAGTAGTGGAGCTTGGTGAAACTCAACATGTTGTATACTTCTCCATATGTTGCAGGTATTTTTATTTAAAAAAGGTTTCATTTACAAGTGTAACATGCATAGCTGGAAATACAAGATTAAATTGTTAACTAATAGGAGAATTTAATAAGTTTTTTGTTTTATGCCTTTGTTGAATTTAATAGGTTTGTTCCCGATACTTCATTGATTCTCATCTTCACATCGAAACCTAATATATGTTGGACAACAGAATCTGCTAATGGAAAACCTTGTTAA

mRNA sequence

ATGTCTCTCTCTAATCCCACCCGTTTCTCCCTCAGTCCCGATCTTCTTCTGACAGCAAGCTCAACAGCAGCATGTAGAAGTCATTTATGCGTCGCTCGGCTCGTGGGTCACCTTGGATTTGTGTGGGTCAGAGCGAACACCAAGCTTTTATCCCAATTTCTACCATTTCAAGGGAACTCGGCTGTGAAACCCACTCTGCACTTAGTGCTCAAGCTTCTAGACAGTACTATTGAGTCATTTTTAATGTCATTGGATAGGAAGTACAGTGAGGATAAGATAATCTGCTACAAGATGATATGTCTTCCTCTTTCTTTGATTATTTTAGGTGATGTCCTGAGCTGTTTTGTTGAGACTACTCAGGCTAGAGTTTAA

Coding sequence (CDS)

ATGTCTCTCTCTAATCCCACCCGTTTCTCCCTCAGTCCCGATCTTCTTCTGACAGCAAGCTCAACAGCAGCATGTAGAAGTCATTTATGCGTCGCTCGGCTCGTGGGTCACCTTGGATTTGTGTGGGTCAGAGCGAACACCAAGCTTTTATCCCAATTTCTACCATTTCAAGGGAACTCGGCTGTGAAACCCACTCTGCACTTAGTGCTCAAGCTTCTAGACAGTACTATTGAGTCATTTTTAATGTCATTGGATAGGAAGTACAGTGAGGATAAGATAATCTGCTACAAGATGATATGTCTTCCTCTTTCTTTGATTATTTTAGGTGATGTCCTGAGCTGTTTTGTTGAGACTACTCAGGCTAGAGTTTAA

Protein sequence

MSLSNPTRFSLSPDLLLTASSTAACRSHLCVARLVGHLGFVWVRANTKLLSQFLPFQGNSAVKPTLHLVLKLLDSTIESFLMSLDRKYSEDKIICYKMICLPLSLIILGDVLSCFVETTQARV

Homology

[Close]

BLAST of Spg016094 vs. TAIR 10
Match: AT2G36170.1 (Ubiquitin supergroup;Ribosomal protein L40e )

HSP 1 Score: 41.2 bits (95), Expect = 7.0e-04
Identity = 21/39 (53.85%), Postives = 26/39 (66.67%), Query Frame = 0


Query: 59 NSAVKPTLHLVLKLLDSTIESFLMSLDRKYSEDKIICYK 98
          N   + TLHLVL+L    IE  LM L RKY++DK+IC K
Sbjct: 60 NIQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRK 98

[Close]

BLAST of Spg016094 vs. TAIR 10
Match: AT3G52590.1 (ubiquitin extension protein 1 )

HSP 1 Score: 41.2 bits (95), Expect = 7.0e-04
Identity = 21/39 (53.85%), Postives = 26/39 (66.67%), Query Frame = 0


Query: 59 NSAVKPTLHLVLKLLDSTIESFLMSLDRKYSEDKIICYK 98
          N   + TLHLVL+L    IE  LM L RKY++DK+IC K
Sbjct: 60 NIQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRK 98

The following BLAST results are available for this feature:

BLAST of Spg016094 vs.


Match Name	E-value	Identity	Description

BLAST of Spg016094 vs.


Match Name	E-value	Identity	Description

BLAST of Spg016094 vs.


Match Name	E-value	Identity	Description

BLAST of Spg016094 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36170.1	7.0e-04	53.85	Ubiquitin supergroup;Ribosomal protein L40e	[more]
AT3G52590.1	7.0e-04	53.85	ubiquitin extension protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 116..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg016094.1	Spg016094.1	mRNA