Spg016011 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg016011
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Photosystem II CP43 reaction center protein
Location	scaffold6: 39525857 .. 39526673 (+)
RNA-Seq Expression	Spg016011
Synteny	Spg016011

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCTATTCGAAGTGGCTCATTTCGTACTGGAGAAGCCCATGTATGAACAAGGATTAATTTTACTTCCCCACCTAGCTACTCTAGGTTGGGGGGTAGGTCCTGGTGGGGAAGTTATAGACACCTTTCCTTACTTTGTGTCTGGAGTACTTCACTTAATTTCCTCCGCAGTATTGGGTTTTGGCGGTATTTATCATGCACTTCTGGGACCCGAGACCCTGGAAGAATCTTTTCCATTCTTCGGTTATGTGTGGAAAGATAGAAATAAAATGACTACCATTTTGGGTATTCACTTAATTTTGTTAGGTCTAGGTGCTTTTCTTCTAGTATTCAAAGCTCTTTATTTTGGGGGCGTATATGATACCTGGGCTCTGGGGGGGGGGGGGAGATGTAAGAAAAATTACCAACTTGACCCTTAGCCCAAGTGTTATATTTGGTTATTTACTAAAATCTCCTTTTGGAGGAGAAGGATGGATTGTTAGTGTGGACGATTTGGAAGATATAGTTGGGGGACATGTATGGTTAGGTTCCATTTGTATACTTGGTGGAATTTGGCATATCTTAACTAAACCCTTTGCATGGGCTCGTCGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATATGTTTTTGGTTTTATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTGAGTTTTACGGGCCGACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGACCAACGTCTTGGAGCTAACGTTGGATCCGCTCAGGACCTACTGGTTTAG

mRNA sequence

ATGAACCTATTCGAAGTGGCTCATTTCGTACTGGAGAAGCCCATGTATGAACAAGGATTAATTTTACTTCCCCACCTAGCTACTCTAGGTTGGGGGGTAGGTCCTGGTGGGGAAGTTATAGACACCTTTCCTTACTTTGTGTCTGGAGTACTTCACTTAATTTCCTCCGCAGTATTGGGTTTTGGCGGTATTTATCATGCACTTCTGGGACCCGAGACCCTGGAAGAATCTTTTCCATTCTTCGGTTATGTGTGGAAAGATAGAAATAAAATGACTACCATTTTGGGTATTCACTTAATTTTGTTAGGTCTAGGTGCTTTTCTTCTAGTATTCAAAGCTCTTTATTTTGGGGGCGTATATGATACCTGGGCTCTGGGGGGGGGGGGGAGATGTTCCATTTGTATACTTGGTGGAATTTGGCATATCTTAACTAAACCCTTTGCATGGGCTCGTCGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATATGTTTTTGGTTTTATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTGAGTTTTACGGGCCGACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGACCAACGTCTTGGAGCTAACGTTGGATCCGCTCAGGACCTACTGGTTTAG

Coding sequence (CDS)

ATGAACCTATTCGAAGTGGCTCATTTCGTACTGGAGAAGCCCATGTATGAACAAGGATTAATTTTACTTCCCCACCTAGCTACTCTAGGTTGGGGGGTAGGTCCTGGTGGGGAAGTTATAGACACCTTTCCTTACTTTGTGTCTGGAGTACTTCACTTAATTTCCTCCGCAGTATTGGGTTTTGGCGGTATTTATCATGCACTTCTGGGACCCGAGACCCTGGAAGAATCTTTTCCATTCTTCGGTTATGTGTGGAAAGATAGAAATAAAATGACTACCATTTTGGGTATTCACTTAATTTTGTTAGGTCTAGGTGCTTTTCTTCTAGTATTCAAAGCTCTTTATTTTGGGGGCGTATATGATACCTGGGCTCTGGGGGGGGGGGGGAGATGTTCCATTTGTATACTTGGTGGAATTTGGCATATCTTAACTAAACCCTTTGCATGGGCTCGTCGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATATGTTTTTGGTTTTATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTGAGTTTTACGGGCCGACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGACCAACGTCTTGGAGCTAACGTTGGATCCGCTCAGGACCTACTGGTTTAG

Protein sequence

MNLFEVAHFVLEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVYDTWALGGGGRCSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGALYVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQDLLV

Homology

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BLAST of Spg016011 vs. NCBI nr
Match: KQK24086.1 (hypothetical protein BRADI_1g78082v3 [Brachypodium distachyon])

HSP 1 Score: 430.6 bits (1106), Expect = 8.1e-117
Identity = 211/241 (87.55%), Postives = 213/241 (88.38%), Query Frame = 0


Query: 1   MNLFEVAHFVLEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFV EKPMYEQGLILLPHLATLGWGVGPGGEV+DTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVLDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLV KALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVLKALYFGGVY 186

Query: 121 DTWALGGGGRC-------------------SICILGGIWHILTKPFAWARRALVWSGEAY 180
           DTWA GGGG C                    IC+ GGIWHILTKPFAWARRA VWSGEAY
Sbjct: 187 DTWAPGGGGGCWIVSVDDLEDIIGGHVWLGFICVFGGIWHILTKPFAWARRAFVWSGEAY 246

Query: 181 LSYSLGALYVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSA 223
           LSYSL AL VFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSA
Sbjct: 247 LSYSLAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSA 306

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BLAST of Spg016011 vs. NCBI nr
Match: YP_009767520.1 (photosystem II 44 kDa protein [Daniellia ogea] >QIS98138.1 photosystem II 44 kDa protein [Daniellia ogea])

HSP 1 Score: 426.8 bits (1096), Expect = 1.2e-115
Identity = 216/266 (81.20%), Postives = 217/266 (81.58%), Query Frame = 0


Query: 1   MNLFEVAHFVLEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFV EKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLG+GAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVY 186

Query: 121 DTWALGGGG--------------------------------------------RCSICIL 180
           DTWA GGGG                                              SICIL
Sbjct: 187 DTWAPGGGGVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALYVFGFIACCFVWFNNTAYPSEFYGPTG 223
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGAL VFGFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 306

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BLAST of Spg016011 vs. NCBI nr
Match: QGA85764.1 (photosystem II CP43 chlorophyll apoprotein, partial [Hymenostegia brachyura])

HSP 1 Score: 426.8 bits (1096), Expect = 1.2e-115
Identity = 216/266 (81.20%), Postives = 217/266 (81.58%), Query Frame = 0


Query: 1   MNLFEVAHFVLEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFV EKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 55  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 114

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLG+GAFLLVFKALYFGGVY
Sbjct: 115 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVY 174

Query: 121 DTWALGGGG--------------------------------------------RCSICIL 180
           DTWA GGGG                                              SICIL
Sbjct: 175 DTWAPGGGGVRKITNLTLSPSILFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 234

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALYVFGFIACCFVWFNNTAYPSEFYGPTG 223
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGAL VFGFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 235 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 294

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BLAST of Spg016011 vs. NCBI nr
Match: YP_009771820.1 (photosystem II CP43 chlorophyll apoprotein [Baphia racemosa] >QIT02605.1 photosystem II CP43 chlorophyll apoprotein [Baphia racemosa])

HSP 1 Score: 426.4 bits (1095), Expect = 1.5e-115
Identity = 215/266 (80.83%), Postives = 217/266 (81.58%), Query Frame = 0


Query: 1   MNLFEVAHFVLEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFV EKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLG+GAFLLVFKALYFGG+Y
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGIY 186

Query: 121 DTWALGGGG--------------------------------------------RCSICIL 180
           DTWA GGGG                                              SICIL
Sbjct: 187 DTWAPGGGGVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALYVFGFIACCFVWFNNTAYPSEFYGPTG 223
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGAL VFGFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 306

[Close]

BLAST of Spg016011 vs. NCBI nr
Match: AAZ04075.1 (photosystem II 44 kDa protein, partial [Acorus americanus])

HSP 1 Score: 425.6 bits (1093), Expect = 2.6e-115
Identity = 216/267 (80.90%), Postives = 217/267 (81.27%), Query Frame = 0


Query: 1   MNLFEVAHFVLEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFV EKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 55  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 114

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLG+GAFLLVFKALYFGGVY
Sbjct: 115 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVY 174

Query: 121 DTWALGGGGRC---------------------------------------------SICI 180
           DTWA  GGGRC                                             SICI
Sbjct: 175 DTWA-PGGGRCKKNNQLNTSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICI 234

Query: 181 LGGIWHILTKPFAWARRALVWSGEAYLSYSLGALYVFGFIACCFVWFNNTAYPSEFYGPT 223
           LGGIWHILTKPFAWARRA VWSGEAYLSYSLGAL VFGFIACCFVWFNNTAYPSEFYGPT
Sbjct: 235 LGGIWHILTKPFAWARRAFVWSGEAYLSYSLGALAVFGFIACCFVWFNNTAYPSEFYGPT 294

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BLAST of Spg016011 vs. ExPASy Swiss-Prot
Match: Q3C1I3 (Photosystem II CP43 reaction center protein OS=Nicotiana sylvestris OX=4096 GN=psbC PE=3 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 5.9e-118
Identity = 216/266 (81.20%), Postives = 216/266 (81.20%), Query Frame = 0


Query: 1   MNLFEVAHFVLEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFV EKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 55  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 114

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY
Sbjct: 115 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 174

Query: 121 DTWALGGGG--------------------------------------------RCSICIL 180
           DTWA GGG                                               SICIL
Sbjct: 175 DTWAPGGGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 234

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALYVFGFIACCFVWFNNTAYPSEFYGPTG 223
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGAL VFGFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 235 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 294

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BLAST of Spg016011 vs. ExPASy Swiss-Prot
Match: Q33C41 (Photosystem II CP43 reaction center protein OS=Nicotiana tomentosiformis OX=4098 GN=psbC PE=3 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 5.9e-118
Identity = 216/266 (81.20%), Postives = 216/266 (81.20%), Query Frame = 0


Query: 1   MNLFEVAHFVLEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFV EKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 55  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 114

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY
Sbjct: 115 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 174

Query: 121 DTWALGGGG--------------------------------------------RCSICIL 180
           DTWA GGG                                               SICIL
Sbjct: 175 DTWAPGGGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 234

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALYVFGFIACCFVWFNNTAYPSEFYGPTG 223
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGAL VFGFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 235 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 294

[Close]

BLAST of Spg016011 vs. ExPASy Swiss-Prot
Match: P06413 (Photosystem II CP43 reaction center protein OS=Nicotiana tabacum OX=4097 GN=psbC PE=3 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 5.9e-118
Identity = 216/266 (81.20%), Postives = 216/266 (81.20%), Query Frame = 0


Query: 1   MNLFEVAHFVLEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFV EKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 186

Query: 121 DTWALGGGG--------------------------------------------RCSICIL 180
           DTWA GGG                                               SICIL
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALYVFGFIACCFVWFNNTAYPSEFYGPTG 223
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGAL VFGFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 306

[Close]

BLAST of Spg016011 vs. ExPASy Swiss-Prot
Match: Q8S8X7 (Photosystem II CP43 reaction center protein OS=Atropa belladonna OX=33113 GN=psbC PE=3 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 1.0e-117
Identity = 215/266 (80.83%), Postives = 216/266 (81.20%), Query Frame = 0


Query: 1   MNLFEVAHFVLEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFV EKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLG+GAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVY 186

Query: 121 DTWALGGGG--------------------------------------------RCSICIL 180
           DTWA GGG                                               SICIL
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALYVFGFIACCFVWFNNTAYPSEFYGPTG 223
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGAL VFGFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALAVFGFIACCFVWFNNTAYPSEFYGPTG 306

[Close]

BLAST of Spg016011 vs. ExPASy Swiss-Prot
Match: B1NWE6 (Photosystem II CP43 reaction center protein OS=Manihot esculenta OX=3983 GN=psbC PE=3 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 1.0e-117
Identity = 215/266 (80.83%), Postives = 216/266 (81.20%), Query Frame = 0


Query: 1   MNLFEVAHFVLEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFV EKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLG+GAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVY 186

Query: 121 DTWALGGGG--------------------------------------------RCSICIL 180
           DTWA GGG                                               SICIL
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALYVFGFIACCFVWFNNTAYPSEFYGPTG 223
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGAL VFGFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 306

[Close]

BLAST of Spg016011 vs. ExPASy TrEMBL
Match: A0A0Q3P231 (Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_1g78082v3 PE=3 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 3.9e-117
Identity = 211/241 (87.55%), Postives = 213/241 (88.38%), Query Frame = 0


Query: 1   MNLFEVAHFVLEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFV EKPMYEQGLILLPHLATLGWGVGPGGEV+DTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVLDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLV KALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVLKALYFGGVY 186

Query: 121 DTWALGGGGRC-------------------SICILGGIWHILTKPFAWARRALVWSGEAY 180
           DTWA GGGG C                    IC+ GGIWHILTKPFAWARRA VWSGEAY
Sbjct: 187 DTWAPGGGGGCWIVSVDDLEDIIGGHVWLGFICVFGGIWHILTKPFAWARRAFVWSGEAY 246

Query: 181 LSYSLGALYVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSA 223
           LSYSL AL VFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSA
Sbjct: 247 LSYSLAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSA 306

[Close]

BLAST of Spg016011 vs. ExPASy TrEMBL
Match: A0A251VI22 (Photosystem II D2 protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr02g0044831 PE=3 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 8.8e-117
Identity = 213/242 (88.02%), Postives = 214/242 (88.43%), Query Frame = 0


Query: 1   MNLFEVAHFVLEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFV EKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 373 MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 432

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY
Sbjct: 433 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 492

Query: 121 DTWALGGGG--------------------RCSICILGGIWHILTKPFAWARRALVWSGEA 180
           DTWA GGG                       SICILGGIWHILTKPF WARRALVWSGEA
Sbjct: 493 DTWAPGGGDVRKITNLTLSPSIIFGGHVWLGSICILGGIWHILTKPFTWARRALVWSGEA 552

Query: 181 YLSYSLGALYVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGS 223
           YLSYSL A+ VFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGS
Sbjct: 553 YLSYSLAAISVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGS 612

[Close]

BLAST of Spg016011 vs. ExPASy TrEMBL
Match: A0A5Q0UWA7 (Photosystem II CP43 reaction center protein (Fragment) OS=Hymenostegia brachyura OX=1940511 GN=psbC PE=3 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 5.7e-116
Identity = 216/266 (81.20%), Postives = 217/266 (81.58%), Query Frame = 0


Query: 1   MNLFEVAHFVLEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFV EKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 55  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 114

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLG+GAFLLVFKALYFGGVY
Sbjct: 115 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVY 174

Query: 121 DTWALGGGG--------------------------------------------RCSICIL 180
           DTWA GGGG                                              SICIL
Sbjct: 175 DTWAPGGGGVRKITNLTLSPSILFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 234

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALYVFGFIACCFVWFNNTAYPSEFYGPTG 223
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGAL VFGFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 235 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 294

[Close]

BLAST of Spg016011 vs. ExPASy TrEMBL
Match: A0A6H0E9P4 (Photosystem II CP43 reaction center protein OS=Daniellia ogea OX=162734 GN=psbC PE=3 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 5.7e-116
Identity = 216/266 (81.20%), Postives = 217/266 (81.58%), Query Frame = 0


Query: 1   MNLFEVAHFVLEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFV EKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLG+GAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVY 186

Query: 121 DTWALGGGG--------------------------------------------RCSICIL 180
           DTWA GGGG                                              SICIL
Sbjct: 187 DTWAPGGGGVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALYVFGFIACCFVWFNNTAYPSEFYGPTG 223
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGAL VFGFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 306

[Close]

BLAST of Spg016011 vs. ExPASy TrEMBL
Match: A0A6H0EL68 (Photosystem II CP43 reaction center protein OS=Baphia racemosa OX=143050 GN=psbC PE=3 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 7.4e-116
Identity = 215/266 (80.83%), Postives = 217/266 (81.58%), Query Frame = 0


Query: 1   MNLFEVAHFVLEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFV EKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLG+GAFLLVFKALYFGG+Y
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGIY 186

Query: 121 DTWALGGGG--------------------------------------------RCSICIL 180
           DTWA GGGG                                              SICIL
Sbjct: 187 DTWAPGGGGVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALYVFGFIACCFVWFNNTAYPSEFYGPTG 223
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGAL VFGFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 306

[Close]

BLAST of Spg016011 vs. TAIR 10
Match: ATCG00280.1 (photosystem II reaction center protein C )

HSP 1 Score: 416.8 bits (1070), Expect = 1.1e-116
Identity = 212/266 (79.70%), Postives = 213/266 (80.08%), Query Frame = 0


Query: 1   MNLFEVAHFVLEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFV EKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLG+GAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGVGAFLLVFKALYFGGVY 186

Query: 121 DTWALGGGG--------------------------------------------RCSICIL 180
           DTWA GGG                                               SICI 
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIF 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALYVFGFIACCFVWFNNTAYPSEFYGPTG 223
           GGIWHILTKPFAWARRALVWSGEAYLSYSL AL V GFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLAALSVCGFIACCFVWFNNTAYPSEFYGPTG 306

The following BLAST results are available for this feature:

BLAST of Spg016011 vs. NCBI nr


Match Name	E-value	Identity	Description
KQK24086.1	8.1e-117	87.55	hypothetical protein BRADI_1g78082v3 [Brachypodium distachyon]	[more]
YP_009767520.1	1.2e-115	81.20	photosystem II 44 kDa protein [Daniellia ogea] >QIS98138.1 photosystem II 44 kDa...	[more]
QGA85764.1	1.2e-115	81.20	photosystem II CP43 chlorophyll apoprotein, partial [Hymenostegia brachyura]	[more]
YP_009771820.1	1.5e-115	80.83	photosystem II CP43 chlorophyll apoprotein [Baphia racemosa] >QIT02605.1 photosy...	[more]
AAZ04075.1	2.6e-115	80.90	photosystem II 44 kDa protein, partial [Acorus americanus]	[more]

BLAST of Spg016011 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3C1I3	5.9e-118	81.20	Photosystem II CP43 reaction center protein OS=Nicotiana sylvestris OX=4096 GN=p...	[more]
Q33C41	5.9e-118	81.20	Photosystem II CP43 reaction center protein OS=Nicotiana tomentosiformis OX=4098...	[more]
P06413	5.9e-118	81.20	Photosystem II CP43 reaction center protein OS=Nicotiana tabacum OX=4097 GN=psbC...	[more]
Q8S8X7	1.0e-117	80.83	Photosystem II CP43 reaction center protein OS=Atropa belladonna OX=33113 GN=psb...	[more]
B1NWE6	1.0e-117	80.83	Photosystem II CP43 reaction center protein OS=Manihot esculenta OX=3983 GN=psbC...	[more]

BLAST of Spg016011 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0Q3P231	3.9e-117	87.55	Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_1g78082v3 P...	[more]
A0A251VI22	8.8e-117	88.02	Photosystem II D2 protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr02g0044831 ...	[more]
A0A5Q0UWA7	5.7e-116	81.20	Photosystem II CP43 reaction center protein (Fragment) OS=Hymenostegia brachyura...	[more]
A0A6H0E9P4	5.7e-116	81.20	Photosystem II CP43 reaction center protein OS=Daniellia ogea OX=162734 GN=psbC ...	[more]
A0A6H0EL68	7.4e-116	80.83	Photosystem II CP43 reaction center protein OS=Baphia racemosa OX=143050 GN=psbC...	[more]

BLAST of Spg016011 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00280.1	1.1e-116	79.70	photosystem II reaction center protein C	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044900	Photosystem II CP43 reaction centre protein superfamily	GENE3D	1.10.10.670	photosystem ii from thermosynechococcus elongatus	coord: 194..225 e-value: 9.5E-11 score: 43.2
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 132..222 e-value: 4.8E-30 score: 104.7 coord: 1..123 e-value: 1.2E-33 score: 116.6
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 1..222
None	No IPR available	PANTHER	PTHR33180:SF16	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 1..222
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 1..223

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg016011.1	Spg016011.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
cellular_component	GO:0009521	photosystem
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0046872	metal ion binding