Spg015955 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg015955
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNase H domain-containing protein
Location	scaffold6: 43787721 .. 43794666 (-)
RNA-Seq Expression	Spg015955
Synteny	Spg015955

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTATTATTCCAGGAAATGGGCAAAAATTCTAGGTAACATCATCGGTGAGTTTGAGAGAGCTGACTTAGAAGAGGATAGTTGGAAATCAGAGAAGTCTTTGAGAGTTAAAGTTAGGATGGATATTAATCAACCCCTAGCCAGAGGGGCGATGATTGGAGTTGGATCGAAAGCAGAGGAAAGTTGGAGCAGGGTGACATATGAGAAATTACCGGACTTCTGTTACAATTGTGGGAGATTGGGGCACGTCCATAAAGACTGTGGGGAGGAGGTCGAGGAAACAGAGGAAGACTTCCAGTACAGCTCATGGCTTAGGGAGGATAACTTGGTTTTCGGTAAAGCTAAAGGTCCCAAAGAGGAAAACGGTAGAAGCAATCAGAACAGAAGGCTAACTAGAGAGAGACCAAGAGGCGAAGGGGAAGAAGGCGAATCCGAGGATGAGCCGAATGTTGAAGGTGAGCTTGACCCAGGGGAAGACCAGTCGGCGGCGAATCTGCCAGTAGCGGTGGAGGAGAAGACGAACGAAGATGGAGTCCTGAAAAAAGAGCCGTTGGAGGAAGTCAGTAAAGTACAATCTAGTAGGGGCAAAGAAAAGACAGATGAGAAGAAGAGGACAAAGGAAGAAATGAATGTCAGCTCGGTGTCAGGTGGGAATGGGACCCACGAGTTCAAAATGGAAACTGAAAAAGGAAACAATGGTGTCAGACCAATTTCGAAGCAGATCAGAGGGGCTGAAGACATTACTGGGCCCACGAAGGAAATGGAAAAAGCCCTGGATAATGGGTCGGCTAGTCTGAGTAATTACAATACGCCCACGGAAACAAAAAATGTTCCAAATTTTGAAGATCAGAAGATTAAAGGTACCAAACTTTGGAAACGAAAGGCTAGAGCAGGGAAGATTTCAACTGAAGCTATAGGAATGGACTGGTCGGTCTCCACGACCAATAAGAGAACTAGGGAAGATGAAAATAGTAATGACCAAGATACAAAAAGACAGTACAGTGCTTACTCCGGCTTTTCTGGAGGGATATCGGCGGAGGCCGTCGGACGCCATGAAAACATTAAGTTGGAACGTTCGAGGGGTGGGGAACCCTCGAACGATCCGTGCTCTGCGCATTGAGGTGCGAAAAAACAACCCCGATATTATTTTTTTTATCTGAAACTAAGGACAAAGGGAGGGTGCAAAATCGTTTGAAAGCGCAATTGGGTTTCGATCACTGTTTTGAGGTTCCTAGCTCGGGTCTGAGTGGGGGGTTGATGTTGCTTTGGAAAAAGGAGTTGTCAGTCAAGGTTAGATCGTTCTCTAAGGGGCACATTGGTGCTATATTCTTAGTGAACAAAGAGTGGTGGCATTTTACTGGGTTTTACGGCAGTCCGAAGTGAGATAAGAGGAGTGACTCTTGGGAGTTGCTTAAGCGTCCCCATGTTATGGATAATCTGCCTTGGCTGGTGGGAGGGGACTTCAACGAGATTCTTTTTGCTAGTGAGAAGTTGGGAGGTAATCCTAAGTAGCAAAGTGACATGGATGGGTTTAAAGAAGTGCTGAGTTTATGTGACCTTGTGGATTTAGGCTATAAAGGGGATAAATTCACATGGAAGAGAAGAGACAAGAAAGGGGAGATTATAAAAGAGAGGCTAGATAGGTTTGTGGCTAATCCTAAGCTAATCGACAAAATGTTTAGAATGGAGGCATCCCATCTAAATTATCATCAATCTGACCACAAACCTATCTTAGTCTCAATGGAGATGACAAGGTCTCGCATCAACTCTCGAAATAGGCCCAGAAAAGTGAGATTTGAAGAAAGTTGGGCTCACCTAGAGGAATGCAAAAATATTGTAAAAGAGATCTGGGCAAGAGGAAGTAATGTTCAAGCATGAGACATCAATCTTAAGGTTGAATCCATCCTTCAAAAGCTTTCTGCCTGGAATAGAGGCTTGGAGGCTCCATTCATGGGGCGGTGGAGAGAAAATATAGAGAGCTGCAAGCTATAGATAAAGGGCTTGGAAATTCTACCGAGGAAGCTATAGCTACTATTGAACGAGAGCTGAGTAATCTGCTGGAGGAAGAAGAAATCTTCTGGAAAATCAGATCTAGGGAGGAGTGGCTTAAGTGGGGAGATAGGAACACTAAATGGTTTCACTCCAAAGCCAATGAAAGAAGAAGAAAGAATACAATTAGAGGGATTTTCAATGAATCCGGAGATTGGGTGGAAGAAGAAGAAGATATCAGGGAAGTGGCTTCTAAGTATTTTGGCAAGTTATTCTCCTCGGCCAACCCAAATCCCGAAGCTATCAAGAGAGCTCTTCAATTTATTGACCAGAGAGTGACGGATAATCAAAGGGCTGCCATGAGACGACCTTTTAATAAGGAGGAAATAGAGAAAGTTATGAGAGGCTTAAAGGCGACTAAAGCTCCAGGTCCTGATGGAGCGCATGCGCTGTTCTTTCAAGCCTACTGGGACATAGTGGGAGAAGATGTGTCAAAGTGTGTCTTAACATTCTTAACGAAGAGGGAGAGTTAGGCCCCTTTAACACGTCCTGGATTGTGTTGATTCCTAAGTCCAATGCCCCAAAGAAGATGGAAGAATTTCGGCCGATTAGCTTATGTAACACTGTGTACAAGATCATCTCAAAAGCCCTCGCTAATAGAATGAAGTGGATTATGGACTCGATTATTTCTCAGACCCAATCAACCTTTATTCCTGGGAGGCTGATATCTGACAACGTTCTAGTCGGGTTTGAAAGTATTCATTCCATGTCAAACAAAAGAAATGGGAAAGAGGGGTTCCTGGCAGCTAAACTAGACATGAGCAAAGCTTATGACAGGGTGGAGTGGGATTTCATTCGCCAGATAATGCTCAAGTTGGGTTTCGAGGACAGCTGGGTCAGAAAGATTATGCGTTGTGTGGAGTCTGTTCAATTCTCGGTGTTGATCAATGGGAACCCAACTCCTATCTTCAGGCCTAGCAGAGGGCTTCGCCAAGGGGACCCCCTGTCCCCTTACTTATTTATTTTTTGTGCGGAGGGTCTCTCGGCTCTGTTTGAAAGGGAAGTTAATTTTTCAAACTTTTCTGGTTTTAAGATTAATAATTTTTGTCCTACTCTTACCCATCTTTTCTTTGCTGACGATAGTCTGATTTTTTCCAGAGCAACGAGGAAGGACTGCGAGGTGTTAAAGAGGATCTTGGACGAGTACGAAGTTGTCTCGGGACAAAGGGTGAATTTGGAGAAATCCTCCTGTTTAGTGAGCAAGAACATAGGGGTTGGGAAGGCGATCTCCCTAAGTAATCTTCTGGGGATCAAGCTTACCACCTCGTTTGGAGACTATCTAGGAATGCCTTCGTAAACTAACAGGGATAAGAACAAGGCCTTTTGGAAAATTAAAGACAAAGTGTGGAAAGCCCTCCAAGGGTGGAAGGAAAGGTTGTTCTCGGCAAGTGGTAAAGAAACTCTCATGAAAGTCGTTGCTCAAGCTATCCCAAATTATACGATGAGCTGCTTTAAGCTTCCTAAGACTTTATGTGAGGAGTTAAACAGAATATGTGCCCGATTTTGGTGGGGTTCGGTGGGGGATAAAAACAAGGCCCATTGGATGAGTTGGAAAAAGTTATGTTTTAGCAAGGAGAATGGAGGGATGGGGTTTAGGGAGCTTAGTCTCTTCAACCAAGCAATGCTTGCAAAGCAAAGTTGGAGGGTAGTTAAACATCCCAATAGCCTCCTTTCCCGTATCCTAAGGGGAAAGTATTTTAAACACTCATCTTTCCTTGAAGCCTCTCTTGGGTCCAATTCGTCGTTTGCCTGGAGGAGCATCATGTGGGGTAGGGACTTGTTTAAAAAGGGCATGCGGTGGAGGGTTGGGAACGGGAGGCATATTATAATAGGAGATGACCCTTGGATAGCTGGAGTTAGCGGGTTCAAGCCTGTAGGTATGAAGGATAGCTTCAAGAAGAACTATGTGAGCTCTCTCATTGGTGCTGACAGCAGGTGGTTGGAAGATAAGATCAGAGATATCTTCATTCAATCAGATGTGGAAGCTATTCTGGATATTCCTTTAGGCAACTTACAGGCTAAGGACGACATCATTTGGGGCCATAACTCTAGAGGGAATTTTACTGTCAAAAGGGCTTATTTCCTTGCTCAACTGGGGGTCTCGGAAGAGAGAGTTTCCTCTTCGGACCAATCAGCCTCGAAAGCTTTGTGGAAGGACCTATGGAAGTCAAAAGCTTTACCCAGAGAGAAAAATTGCTCGTGGAAGGCTTTTCAGGACATTCTCCCTACTCAAACTAAAATCATTTCTAAAGGAATTGATATTAATCCCACATCTTTTCTTTGCAGGGATAAAAAGGAATCAGGGAGGTGTAGGGATAAAAACCCTAGCGCAGCGGAAACGTACAGAGACCTTAATCGGTTTAAATGCCGATTGGGAAACCAATACGACGGCAAAACAATTATACAGCAGAAAATTAAAGAATCATGCTGTAAAAATTGAAATAAAACATGCTTAAATAGCCCTAAAAACAATAGATCTAATCTATAAAGAATCCTATTGATCCTAGGGTTCAAGAATACTTACCCTTGAAGTTTTCTTGACAAGATTTCACCAAAATCCTTCGGTTCCACAGAAAAAACAGCAGCCAAGAACTCCTCTTCTTTGCTGGAGAATAATCACGAACACCACCACCACGATTGCACCGGTATTCTCTTAGGTGTGAATGTTGAGTGGCTTGTGGGAACCCAGATCTCTAAGGATTTTTCTCTGAAAAGACACTCTGTATTCACAGAGGGAGAGACGAACGAGAGAGAGGGCGAGAGAGAGGGAAAGAGGCGTGAGTTTGGGGAGTGTCGTCCTCAAAACTGAATATGACCCCTTCAAAAATAACCTCACGCATAATATCAGGTAACTGAAATATCAGTTACCTGATATTTTTAATTAATTATAAATTTAAAAATAATATTTTAAATTATAATTAATTAAATTTTAATTAATCAATATTAATTAAAATAACATTAATTTAAATCTTATTTAAATTAATATCCCTCTTAACCTATAGTTTAATTAAATCAAATTTAATTAAACTAAATCAATTAATTAATTCAAAATTAATTAATTTAAAAATAAGAAAATTGAACATCATATATTCAATTATTATTATTCTCTCTCATAAAACTATAGTATTAATATACATCCAATGCACATTAATTATAACCTATAGTTTTAATATGAATCAAATTCATATTTTAGTTTAATATCCGAACCCCTTCGAATACTTAATTTAACCTTAGAAATTTACCTCAACGCCCTTATAGAGCTACCGATGGGACCTGATGGACCTACAGATCAGAAGCTCCAACGATATGAGATTAGTTGGTTAAACTCATTAACCAAGTTAATCAATATTCGTTAACTGTGGTTCACTCCACTAAAGAACCACAGCTGCACTCTTCTCACTGCAGATATATTTCTGTGTCCACGGATATCGACCGTCAACAGCAAGTTAGCCCTTCACGTGTGTTCGTACCCCAGCTAGGTCAAATTACCGTTTTACCCCTGGGCTACCTCTTGGTCCTTAAGTACCAGTGCTCCTCTAATGAACAACCTGTTTGTGGTCCAACCAGCAAACAGAAATCCCTCTCGTGCCATAAAGAGGGTAGGGCCCATTGTTCAAGACCCGGAGACACCACTTAAGGGAACACACCTCTACTTACCCTAATATCGGGAAGGAGTGAATTCCATCTTGTAAGACTACGTTCCCAGCTCCCCACTCGGTCTTGTCCCCAAAATGGTAGGCTTATTGAGTCGGCGAACAGGCCACTCTCACCCGTACAAATCAAAGGACAATCCCTCATGGACAGGAGTCCATAATCCACTCAGGATTAAGGCCAAGTTGCCTAGGTCATCCTAGTGAAATAGAAACCGAGCTAACTAACGGTGTTACAGTTAGTGGTTAACTATTTCGCGGTCCGGTCTTTGTGCAAACTCATTGCACAGGATACCCCCACTCGCATGTCAACCACATGAACGCGTTGGATCATTACGTTTGTATCAATATACAAAGCGGGCCGTATCCATAGTGTCACCAGGACAAGGTATCCAGCCTTATCCCTATACTACAGACCCTTTAGGCTAAAACTTGAACATTGATCCCCGTATGTCCCTACATACTAGTTCAAGCCTCATTCTATTAGCCTTGGATGTTTAGTTTATTGGATTATGGTTCATAAGACACGATATAATACAAACATTGAATAATACATCAGTTTTATTAATGTTCGGTCAAATGTACATTTACTATCAACAAGTTTTAGGGCATAAAACCCAACAGGAGGCACATAATATGGGGTTGCAAGGTCTCAGGTAAGATCTGGTCCCACTTCTTCCCCTTCTTATGTATCTCTGATTTGGGTGGCAGGGAGGGAGATGATCCTAAAGCTTGTTGGGAGCAGGCGCGAAAGGTTTTTAACGAAGAAGATCGTGATTTGGCATTTCGGATATTTGGCACATTTGGTCCCTTAGAAACAGGGTTAACCATTCTAAGTCTAAGCTAGATCCTCAAGCGATTATTAGAGAAATCGAAATTTTGCAAGGGAACAGAACGCACCTCACGGAGTTCGGAGCTCCTTCAACCAGATGTGAGAGTCGGTCGAGTCAGGGGTCGTGGAGGCCTCCTCAGCAAGGTTGGTGGAAGATCAACACGGATGCTTCCTGGTCAGATTCCAAAAATGCAGGAGGTATTGGGTGGATTGCTCGTGACTCGGGTGGGTCTTTCATCTTCGCCAGAGGGAAAAAAATTAGCAGAAAGTGGGATATGAAATGCATGGAGTTGAAAGCGATTGTGGAAGGTCTCAGAAGCTTACTAATCAATATTGGTAGGCCTCTCCCGCGGATCCTCATCGAATCAGACTCCTCTGTTGCGATCGCCATTTTGAATCATGAAGCTGAATAG

mRNA sequence

ATGGAGGCATCCCATCTAAATTATCATCAATCTGACCACAAACCTATCTTAGTCTCAATGGAGATGACAAGGTCTCGCATCAACTCTCGAAATAGGCCCAGAAAAGTGAGATTTGAAGAAAGTTGGGCTCACCTAGAGGAATGCAAAAATATTGTAAAAGAGATCTGGGCAAGAGGAAGTATGAAGGATAGCTTCAAGAAGAACTATGTGAGCTCTCTCATTGGTGCTGACAGCAGGTGGTTGGAAGATAAGATCAGAGATATCTTCATTCAATCAGATGTGGAAGCTATTCTGGATATTCCTTTAGGCAACTTACAGGCTAAGGACGACATCATTTGGGGCCATAACTCTAGAGGGAATTTTACTATTTCACCAAAATCCTTCGGTTCCACAGAAAAAACAGCAGCCAAGAACTCCTCTTCTTTGCTGGAGAATAATCACGAACACCACCACCACGATTGCACCGGTATTCTCTTAGGTGTGAATGTTGAGTGGCTTGTGGGAACCCAGATCTCTAAGGATTTTTCTCTGAAAAGACACTCTGTATTCACAGAGGGAGAGACGAACGAGAGAGAGGGCGAGAGAGAGGGAAAGAGGCGTAAGATCTGGTCCCACTTCTTCCCCTTCTTATGTATCTCTGATTTGGGTGGCAGGGAGGGAGATGATCCTAAAGCTTGTTGGGAGCAGGCGCGAAAGTCTAAGCTAGATCCTCAAGCGATTATTAGAGAAATCGAAATTTTGCAAGGGAACAGAACGCACCTCACGGAGTTCGGAGCTCCTTCAACCAGATGTGAGAGTCGGTCGAGTCAGGGGTCGTGGAGGCCTCCTCAGCAAGGTTGGTGGAAGATCAACACGGATGCTTCCTGGTCAGATTCCAAAAATGCAGGAGGTATTGGGTGGATTGCTCGTGACTCGGGTGGGTCTTTCATCTTCGCCAGAGGGAAAAAAATTAGCAGAAAGTGGGATATGAAATGCATGGAGTTGAAAGCGATTGTGGAAGGTCTCAGAAGCTTACTAATCAATATTGGTAGGCCTCTCCCGCGGATCCTCATCGAATCAGACTCCTCTGTTGCGATCGCCATTTTGAATCATGAAGCTGAATAG

Coding sequence (CDS)

ATGGAGGCATCCCATCTAAATTATCATCAATCTGACCACAAACCTATCTTAGTCTCAATGGAGATGACAAGGTCTCGCATCAACTCTCGAAATAGGCCCAGAAAAGTGAGATTTGAAGAAAGTTGGGCTCACCTAGAGGAATGCAAAAATATTGTAAAAGAGATCTGGGCAAGAGGAAGTATGAAGGATAGCTTCAAGAAGAACTATGTGAGCTCTCTCATTGGTGCTGACAGCAGGTGGTTGGAAGATAAGATCAGAGATATCTTCATTCAATCAGATGTGGAAGCTATTCTGGATATTCCTTTAGGCAACTTACAGGCTAAGGACGACATCATTTGGGGCCATAACTCTAGAGGGAATTTTACTATTTCACCAAAATCCTTCGGTTCCACAGAAAAAACAGCAGCCAAGAACTCCTCTTCTTTGCTGGAGAATAATCACGAACACCACCACCACGATTGCACCGGTATTCTCTTAGGTGTGAATGTTGAGTGGCTTGTGGGAACCCAGATCTCTAAGGATTTTTCTCTGAAAAGACACTCTGTATTCACAGAGGGAGAGACGAACGAGAGAGAGGGCGAGAGAGAGGGAAAGAGGCGTAAGATCTGGTCCCACTTCTTCCCCTTCTTATGTATCTCTGATTTGGGTGGCAGGGAGGGAGATGATCCTAAAGCTTGTTGGGAGCAGGCGCGAAAGTCTAAGCTAGATCCTCAAGCGATTATTAGAGAAATCGAAATTTTGCAAGGGAACAGAACGCACCTCACGGAGTTCGGAGCTCCTTCAACCAGATGTGAGAGTCGGTCGAGTCAGGGGTCGTGGAGGCCTCCTCAGCAAGGTTGGTGGAAGATCAACACGGATGCTTCCTGGTCAGATTCCAAAAATGCAGGAGGTATTGGGTGGATTGCTCGTGACTCGGGTGGGTCTTTCATCTTCGCCAGAGGGAAAAAAATTAGCAGAAAGTGGGATATGAAATGCATGGAGTTGAAAGCGATTGTGGAAGGTCTCAGAAGCTTACTAATCAATATTGGTAGGCCTCTCCCGCGGATCCTCATCGAATCAGACTCCTCTGTTGCGATCGCCATTTTGAATCATGAAGCTGAATAG

Protein sequence

MEASHLNYHQSDHKPILVSMEMTRSRINSRNRPRKVRFEESWAHLEECKNIVKEIWARGSMKDSFKKNYVSSLIGADSRWLEDKIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHNSRGNFTISPKSFGSTEKTAAKNSSSLLENNHEHHHHDCTGILLGVNVEWLVGTQISKDFSLKRHSVFTEGETNEREGEREGKRRKIWSHFFPFLCISDLGGREGDDPKACWEQARKSKLDPQAIIREIEILQGNRTHLTEFGAPSTRCESRSSQGSWRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLLINIGRPLPRILIESDSSVAIAILNHEAE

Homology

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BLAST of Spg015955 vs. NCBI nr
Match: XP_024042628.1 (uncharacterized protein LOC112099434 [Citrus clementina])

HSP 1 Score: 77.4 bits (189), Expect = 2.8e-10
Identity = 74/304 (24.34%), Postives = 128/304 (42.11%), Query Frame = 0


Query: 70  VSSLIGADSRWLEDKIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHNSRGNFTI-SPKSF 129
           VS LI  D+RW E  + D F+Q D +AI++IPL    ++D +IW ++ +G +++ S    
Sbjct: 339 VSELITNDNRWKEALLFDQFVQEDADAIMNIPLPRNHSRDQVIWHYDRKGEYSVKSGYQI 398

Query: 130 GSTEKTAAKNSSSLLENNHEHHHHDCTGILLGVNVEWLVGTQISKDFSLKRHSVFTEGET 189
               K     SSS+  NN   +              W   T+ ++ F   +  V  +  T
Sbjct: 399 ALKMKVPDTPSSSVNNNNQSENIFHALVECKAARKTW-EHTKFAESF---KDMVGPDMLT 458

Query: 190 NEREGEREGKRRKIWSHFFPFLCISDLGGREGDDPKACWE--QARK------SKLDPQAI 249
             +E       +K+    F  L ++            CW    AR        K   Q  
Sbjct: 459 VFQE-----LVKKMSKTDFELLAVT------------CWTIWTARNKLIFEAKKPGYQMS 518

Query: 250 IREIEILQGNRTHLTEFGAPSTRCESRSSQGSWRPPQQGWWKINTDASWSDSKNAGGIGW 309
           +   E L      +   G      + + +  +W PP   W+K+N DA+    KN  G+G 
Sbjct: 519 VATAEALLEAYQRVKPSGLICGADKEKKTAKAWLPPPPSWFKVNVDAAIRKEKNLSGLGA 578

Query: 310 IARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLLINIGRPLPRILIESDSSVAIA 365
           + RD+ G+ I A  K      ++   E +A+  GL+   + +   L  ++IE+DS +   
Sbjct: 579 VIRDATGNIIAAAVKTTRFHGNVSYAEAEAVRWGLQ---VAVDAGLTSLIIETDSQMVAD 618

[Close]

BLAST of Spg015955 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 73.6 bits (179), Expect = 4.1e-09
Identity = 40/96 (41.67%), Postives = 57/96 (59.38%), Query Frame = 0


Query: 273 WRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIV 332
           W PP    W +N DASWSDS + GGIGWI R   G  + A  + +    ++K +E  AI+
Sbjct: 71  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAIL 130

Query: 333 EGLRSLL-INIGRPLPRILIESDSSVAIAILNHEAE 368
           EGLR+L  + + RPL    IE+DS+   ++LN + E
Sbjct: 131 EGLRNLTNLGVLRPLH---IETDSAEVESLLNRKRE 163

[Close]

BLAST of Spg015955 vs. NCBI nr
Match: XP_008351965.2 (uncharacterized protein LOC103415096 [Malus domestica])

HSP 1 Score: 72.8 bits (177), Expect = 7.0e-09
Identity = 78/320 (24.38%), Postives = 124/320 (38.75%), Query Frame = 0


Query: 59  GSMKDSFKKNYVSSLIGADSRWLEDKIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHNSR 118
           GS++ S      S +      W  D ++     S+VEAILD+  G+   KD ++W H  R
Sbjct: 416 GSIQVSKNLKVKSLICPVSGEWDLDFLKPFLADSEVEAILDLHTGDPTLKDRLVWPHEKR 475

Query: 119 GNFTISPKSFGSTEKTAAKNSSSLLENNHEHHHHDCTGILLGVNVEWLVGTQISKDFSLK 178
           G++++    + S  ++  ++  S+   +        T   L V V WL G     +    
Sbjct: 476 GSYSVESGYYWSLNRSIDRSQQSIKLASIPSTLWK-TVWKLKVEVVWLGG---MLNLRPN 535

Query: 179 RHSVFTEGETNEREGEREGKRRKIWSHFFPFLCISDLGGREGDDPKACWE--------QA 238
           R  V +      + GE E    ++  +   ++  +            CW         Q 
Sbjct: 536 RQHVSSWASWLMQMGEAENGSAEVRINMISYIAFT------------CWHIWKSRCEFQF 595

Query: 239 RKSKLDPQAIIREIEILQGNRTHLTEFGAPSTRCESRSSQG---SWRPPQQGWWKINTDA 298
               + P  ++  +     +    T F   S    ++SS G    W PP QG  KIN DA
Sbjct: 596 NNQVIYPSRVVAAVS-RSVSAYQETIFRQSSLSLLNQSSLGDGAQWSPPNQGVIKINVDA 655

Query: 299 SWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLLINIGRPLP 358
           SW      G  G +ARD  G F+     KI        +E  AI+ G     + +     
Sbjct: 656 SWEAKTGVGFTGVVARDEHGRFLATSRHKIMAT-GATMVEALAIMHGCN---LGVSNGWN 714

Query: 359 RILIESDSSVAIAILNHEAE 368
            I +ESDS  AI+ L   A+
Sbjct: 716 SICVESDSFDAISCLRDPAK 714

[Close]

BLAST of Spg015955 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 72.4 bits (176), Expect = 9.1e-09
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 0


Query: 273 WRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIV 332
           W+PP    WK+NTDA+W    N GGIGWI RD  G  I A  + I  + ++  +E+ AI 
Sbjct: 79  WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAIC 138

Query: 333 EGLRSLLINIGRPLPR-----ILIESDSSVAIAILNHEAE 368
           EGLR++     RP+ +     I +ESDS  AI +L+ + +
Sbjct: 139 EGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQ 178

[Close]

BLAST of Spg015955 vs. NCBI nr
Match: KAF4376439.1 (hypothetical protein G4B88_000127 [Cannabis sativa] >KAF4381152.1 hypothetical protein F8388_012074 [Cannabis sativa])

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-08
Identity = 40/117 (34.19%), Postives = 64/117 (54.70%), Query Frame = 0


Query: 6   LNYHQSDHKPILVSMEMTRSRINSRNRPRKVR--FEESWAHLEECKNIVKEIW----ARG 65
           L++  SDH+P++V M +        +  +K R  FEE+W   E+CK+I++E W    A G
Sbjct: 524 LDWWASDHRPLVVEMPLGNGNQTEEHDRKKGRFHFEEAWCEEEQCKDIIEEQWREDVAVG 583

Query: 66  SMKDSFKKNYVSSLIGADSRWLEDKIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHN 117
           S  D   K        A+ RW E+ IR++F ++D + IL IP  + +  D I+W +N
Sbjct: 584 SGVDFKLKTERVGFALANGRWDEEFIRNVFNETDADLILAIPFSDWEVDDKILWHYN 640

[Close]

BLAST of Spg015955 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-09
Identity = 40/96 (41.67%), Postives = 57/96 (59.38%), Query Frame = 0


Query: 273 WRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIV 332
           W PP    W +N DASWSDS + GGIGWI R   G  + A  + +    ++K +E  AI+
Sbjct: 71  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAIL 130

Query: 333 EGLRSLL-INIGRPLPRILIESDSSVAIAILNHEAE 368
           EGLR+L  + + RPL    IE+DS+   ++LN + E
Sbjct: 131 EGLRNLTNLGVLRPLH---IETDSAEVESLLNRKRE 163

[Close]

BLAST of Spg015955 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.4e-09
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 0


Query: 273 WRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIV 332
           W+PP    WK+NTDA+W    N GGIGWI RD  G  I A  + I  + ++  +E+ AI 
Sbjct: 79  WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAIC 138

Query: 333 EGLRSLLINIGRPLPR-----ILIESDSSVAIAILNHEAE 368
           EGLR++     RP+ +     I +ESDS  AI +L+ + +
Sbjct: 139 EGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQ 178

[Close]

BLAST of Spg015955 vs. ExPASy TrEMBL
Match: A0A803Q0L5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.8e-09
Identity = 80/326 (24.54%), Postives = 129/326 (39.57%), Query Frame = 0


Query: 70  VSSLIGADSRWLEDKIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHNSRGNFTISPKSFG 129
           V+ +   D  W    I+++F   D E IL +P    + +D I+W ++  G +T+      
Sbjct: 541 VADMKHGDGSWDSIFIQEVFNSDDAELILSMPSTGWELEDKIMWHYSKNGEYTV------ 600

Query: 130 STEKTAAKNSSSLLENNHEHHHHDCTGILLGVNVEWLVGTQISKDFSLKRHSVFTEG--- 189
              K+  K +SSL+E  ++ +          V V+W       K     +H V+      
Sbjct: 601 ---KSGYKMASSLVEEQYQSNDK--------VLVDWWKALWRFKIPPKIKHFVWKLAYNW 660

Query: 190 -ETNEREGEREGKRRKIWS--------------HFFPFLCISDLGGREGDDPK------A 249
             TN    +R G  ++ W+                  FL       R+ D  K       
Sbjct: 661 LPTNVTLAKRGGS-KEFWAVSGFKDEMKRLKDEDVLSFLMRM---ARQWDKGKFEFFLVL 720

Query: 250 CWE--QARKSKLDPQAIIREIEILQGNRTHLTEF--GAPSTRCESRSSQGSWRPPQQGWW 309
            W     R S +         E++   R +LTEF  G  +     R     W  P+ G  
Sbjct: 721 TWNIWNIRNSVIHGGIAPMAGEMVDWCRKYLTEFEGGGATAVSRVRRENSKWGAPELGRM 780

Query: 310 KINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLLIN 368
           KIN DA         GIG + RDSGG  ++A    + ++     +EL+AI+ GL+   + 
Sbjct: 781 KINVDARVKSGGGVSGIGCVIRDSGGRTLYASSAVVHQELAPLQLELQAILVGLQ---VG 840

[Close]

BLAST of Spg015955 vs. ExPASy TrEMBL
Match: A0A7N2LK30 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.8e-09
Identity = 73/314 (23.25%), Postives = 130/314 (41.40%), Query Frame = 0


Query: 70  VSSLIGADS-RWLEDKIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHNSRGNFTISPKSF 129
           V  LI A++  W  D IR++F++ + ++IL IPLG L   D ++W   + G F++   ++
Sbjct: 5   VCVLIDAENGEWKADLIREVFLEHEADSILSIPLGTLLPADRLVWTTAANGKFSVK-SAY 64

Query: 130 GSTEKTAAKNSSSLLENNHEHHHHDCTGILLGVNVEWLVGTQISKDFSLKRHSVFTEGET 189
                   K+     +++   H           N+  + G +  ++F   + ++F    T
Sbjct: 65  NLARSGEKKDGGESSDSSIMKHFWQKLRRAKVPNMVRVFGCKACQNFLPTKMNLFHRQVT 124

Query: 190 NEREGEREG--------------KRRKIWSHFFPFLCISDLGGREGDDPKACWEQARKSK 249
           ++   E  G              K +++W+H      +  + G+       C+    + +
Sbjct: 125 DDPTCEECGLEPETVLHVLCQCPKAKEVWTHCH---LLHRIEGKGDFTDVLCFNGMNQDQ 184

Query: 250 LDPQAIIREIEILQGNRTHLTEFGAPS---TRCESRSS---QGSWRPPQQGWWKINTDAS 309
                          N  H+    A S    R E R S   Q  W PP  GW+K+NTD +
Sbjct: 185 -------------DSNLMHMILMIAWSLWRNRNEKRMSHPCQNKWTPPPHGWYKVNTDGA 244

Query: 310 WSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKCMELKAIVEGLRSLLINIGRPLPR 363
               +   GIG IA D  G  + A  K++        +E KA+ E   S   +IG  + +
Sbjct: 245 VFSKQKWVGIGVIASDEQGRVVAAMSKRLQVPLGALEVEAKAL-EAAASFEKDIG--VQK 298

[Close]

BLAST of Spg015955 vs. ExPASy TrEMBL
Match: A0A7J6GEA5 (CCHC-type domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_012074 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.5e-09
Identity = 40/117 (34.19%), Postives = 64/117 (54.70%), Query Frame = 0


Query: 6   LNYHQSDHKPILVSMEMTRSRINSRNRPRKVR--FEESWAHLEECKNIVKEIW----ARG 65
           L++  SDH+P++V M +        +  +K R  FEE+W   E+CK+I++E W    A G
Sbjct: 524 LDWWASDHRPLVVEMPLGNGNQTEEHDRKKGRFHFEEAWCEEEQCKDIIEEQWREDVAVG 583

Query: 66  SMKDSFKKNYVSSLIGADSRWLEDKIRDIFIQSDVEAILDIPLGNLQAKDDIIWGHN 117
           S  D   K        A+ RW E+ IR++F ++D + IL IP  + +  D I+W +N
Sbjct: 584 SGVDFKLKTERVGFALANGRWDEEFIRNVFNETDADLILAIPFSDWEVDDKILWHYN 640

[Close]

BLAST of Spg015955 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 2.6e-09
Identity = 36/101 (35.64%), Postives = 58/101 (57.43%), Query Frame = 0


Query: 266 SRSSQGSWRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSFIFARGKKISRKWDMKC 325
           +RSS G WRPP   W K NTDA+W+      GIGW+ R+  G   +   + + +   +K 
Sbjct: 413 NRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPK---LKS 472

Query: 326 MELKAIVEGLRSLLINIGR-PLPRILIESDSSVAIAILNHE 366
           + L+A +E +R  ++++ R     ++ ESDS V I ILN++
Sbjct: 473 V-LEAELEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNND 509

[Close]

BLAST of Spg015955 vs. TAIR 10
Match: AT5G19270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G03566.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 6.5e-05
Identity = 34/113 (30.09%), Postives = 51/113 (45.13%), Query Frame = 0


Query: 250 NRTHLTEFGAPSTRCESRSSQGSWRPPQQGWWKINTDASWSDSKNAGGIGWIARDSGGSF 309
           N   +  +GA   R    S   +W PP  G  K N +A W ++    G+ WIARD  G  
Sbjct: 40  NARQIDTYGACFVR--GTSLDLNWTPPDFGIVKCNVNAHWGNADMMSGVAWIARDVNGLA 99

Query: 310 IFARGKKISRKWDMKCMELKAIVEGLRSLLINIGRPLPRILIESDSSVAIAIL 363
           ++      +R  +    EL+ I+  ++SL       L  ++I SD   AIA L
Sbjct: 100 LYHARDAFTRSSNRIMAELRCILWVVKSLR---DLRLQNVIISSDCQAAIAAL 147

The following BLAST results are available for this feature:

BLAST of Spg015955 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024042628.1	2.8e-10	24.34	uncharacterized protein LOC112099434 [Citrus clementina]	[more]
XP_022155262.1	4.1e-09	41.67	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_008351965.2	7.0e-09	24.38	uncharacterized protein LOC103415096 [Malus domestica]	[more]
XP_022156777.1	9.1e-09	40.00	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
KAF4376439.1	1.6e-08	34.19	hypothetical protein G4B88_000127 [Cannabis sativa] >KAF4381152.1 hypothetical p...	[more]

BLAST of Spg015955 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg015955 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	2.0e-09	41.67	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DSV1	4.4e-09	40.00	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A803Q0L5	5.8e-09	24.54	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A7N2LK30	5.8e-09	23.25	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A7J6GEA5	7.5e-09	34.19	CCHC-type domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_012074 P...	[more]

BLAST of Spg015955 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29090.1	2.6e-09	35.64	Ribonuclease H-like superfamily protein	[more]
AT5G19270.1	6.5e-05	30.09	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 284..365 e-value: 2.7E-9 score: 36.9
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 279..367 e-value: 1.1E-8 score: 37.2
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 261..362
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 283..363 e-value: 1.42328E-13 score: 64.6428
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 279..364

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg015955.1	Spg015955.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity