Spg015861 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg015861
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	heat stress transcription factor C-1-like
Location	scaffold6: 39240212 .. 39240671 (+)
RNA-Seq Expression	Spg015861
Synteny	Spg015861

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCTGGAGAAGGATCGAGCCCGAGCCCAGATTGGGGATAAGAAGCGGTGGTTGATGATTTCGTCTTCTTCGTCGTCGCCGTCCACCACGACGGTGACCACGTCCTTGTACGCGGAGGACATGGAGAAGAAGGGCAACCGGCGGGACTTTGGGGCGAACTTTTTGTCGCCGAAGGTGCCGGGCCGGCGGACAGTCAGGTTCAACCTTGGATTATGGAGGCGGAGGCGATGGATAGAAGTATAGGCAGTAGCGGCGGAGTGGGAGTCGGAGTCGGAGAGATGAAGTATTTGACGAAAATGATGGGGGCAGTGAAGGAGAGTCGTCCACAACCGCCTTATCCGCAAGAAAAAAAAACCGTCGGCGGCCGGCCGCTGCCAGCGGTGGCCGACCGCCGGCTGACGGAGATTTGATGAAGAAAATGGAGGGGTTGAGGGAAGAGGATGAAGAAGTGGGTTGA

mRNA sequence

ATGATGCTGGAGAAGGATCGAGCCCGAGCCCAGATTGGGGATAAGAAGCGGTGGTTGATGATTTCGTCTTCTTCGTCGTCGCCGTCCACCACGACGGTGACCACGTCCTTGTACGCGGAGGACATGGAGAAGAAGGGCAACCGGCGGGACTTTGGGGCGAACTTTTTGTCGCCGAAGGTGCCGGGCCGGCGGACAGTCAGTGAAGGAGAGTCGTCCACAACCGCCTTATCCGCAAGAAAAAAAAACCGTCGGCGGCCGGCCGCTGCCAGCGGTGGCCGACCGCCGGCTGACGGAGATTTGATGAAGAAAATGGAGGGGTTGAGGGAAGAGGATGAAGAAGTGGGTTGA

Coding sequence (CDS)

ATGATGCTGGAGAAGGATCGAGCCCGAGCCCAGATTGGGGATAAGAAGCGGTGGTTGATGATTTCGTCTTCTTCGTCGTCGCCGTCCACCACGACGGTGACCACGTCCTTGTACGCGGAGGACATGGAGAAGAAGGGCAACCGGCGGGACTTTGGGGCGAACTTTTTGTCGCCGAAGGTGCCGGGCCGGCGGACAGTCAGTGAAGGAGAGTCGTCCACAACCGCCTTATCCGCAAGAAAAAAAAACCGTCGGCGGCCGGCCGCTGCCAGCGGTGGCCGACCGCCGGCTGACGGAGATTTGATGAAGAAAATGGAGGGGTTGAGGGAAGAGGATGAAGAAGTGGGTTGA

Protein sequence

MMLEKDRARAQIGDKKRWLMISSSSSSPSTTTVTTSLYAEDMEKKGNRRDFGANFLSPKVPGRRTVSEGESSTTALSARKKNRRRPAAASGGRPPADGDLMKKMEGLREEDEEVG

Homology

[Close]

BLAST of Spg015861 vs. NCBI nr
Match: XP_022933445.1 (heat stress transcription factor C-1-like [Cucurbita moschata])

HSP 1 Score: 68.9 bits (167), Expect = 3.2e-08
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 1   MMLEKDRARAQIGDKKRWLMISSSSSSPSTTTV-TTSLYAEDMEKKGNRRDFGANFLSPK 60
           MML+KDR  A IGDKKR LMISSSSSSPSTTTV TTSL AE++E++G+ R    NF SP+
Sbjct: 172 MMLQKDRPGAHIGDKKRRLMISSSSSSPSTTTVTTTSLEAEEIEEEGSWR---RNFSSPE 231

Query: 61  VPG 63
           V G
Sbjct: 232 VSG 231

[Close]

BLAST of Spg015861 vs. NCBI nr
Match: XP_022973632.1 (heat stress transcription factor C-1-like [Cucurbita maxima])

HSP 1 Score: 67.8 bits (164), Expect = 7.1e-08
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 1   MMLEKDRARAQIGDKKRWLMISSSSSSPSTTTV-TTSLYAEDMEKKGNRRDFGANFLSPK 60
           MML+KDR  A IGDKKR LMISSSSSSPSTTT+ TTSL AE++E++G+ R    NF SP+
Sbjct: 172 MMLQKDRPGAHIGDKKRRLMISSSSSSPSTTTMTTTSLEAEEIEEEGSWR---PNFSSPE 231

Query: 61  VPG 63
           V G
Sbjct: 232 VSG 231

[Close]

BLAST of Spg015861 vs. NCBI nr
Match: XP_023530778.1 (heat stress transcription factor C-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-07
Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1   MMLEKDRARAQIGDKKRWLMISSSSSSPSTTTV-TTSLYAEDMEKKGNRRDFGANFLSPK 60
           MML+KDR    IGDKKR LMISSSSSSPSTTTV TTSL AE++E++G+ R    NF SP+
Sbjct: 172 MMLQKDRPGPHIGDKKRRLMISSSSSSPSTTTVTTTSLEAEEIEEEGSWR---PNFSSPE 231

Query: 61  VPG 63
           V G
Sbjct: 232 VSG 231

[Close]

BLAST of Spg015861 vs. NCBI nr
Match: XP_038879566.1 (heat stress transcription factor C-1-like [Benincasa hispida])

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-06
Identity = 40/72 (55.56%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1   MMLEKDRARAQIGDKKRWLMISSSSSSPSTTTVTTSLYAEDMEKKGNRRDFGANFLSPKV 60
           +ML KD  R Q  +KKR LMISSSSSSPSTTT+T     E  E   NRRDFG NF SP+V
Sbjct: 175 IMLHKDPTRLQFPEKKRRLMISSSSSSPSTTTLTEG--DEIEEDANNRRDFGLNFSSPEV 234

Query: 61  PGRRTVSEGESS 73
            G   + E E +
Sbjct: 235 SGPWFLREPEGN 244

[Close]

BLAST of Spg015861 vs. NCBI nr
Match: KAG7021846.1 (Heat stress transcription factor C-1b, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-06
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 1   MMLEKDRARAQIGDKKRWLMISSSSSSPSTTTV-TTSLYAEDMEKKGNRRDFGANFLSPK 60
           MML+KDR    IGDKKR LMISSSSSSPSTTTV TTS+ AE++E++G+ R    NF S +
Sbjct: 172 MMLQKDRPGPHIGDKKRRLMISSSSSSPSTTTVTTTSMEAEEIEEEGSWR---PNFSSLE 231

Query: 61  VPG 63
           V G
Sbjct: 232 VSG 231

[Close]

BLAST of Spg015861 vs. ExPASy TrEMBL
Match: A0A6J1F4W8 (heat stress transcription factor C-1-like OS=Cucurbita moschata OX=3662 GN=LOC111440859 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-08
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 1   MMLEKDRARAQIGDKKRWLMISSSSSSPSTTTV-TTSLYAEDMEKKGNRRDFGANFLSPK 60
           MML+KDR  A IGDKKR LMISSSSSSPSTTTV TTSL AE++E++G+ R    NF SP+
Sbjct: 172 MMLQKDRPGAHIGDKKRRLMISSSSSSPSTTTVTTTSLEAEEIEEEGSWR---RNFSSPE 231

Query: 61  VPG 63
           V G
Sbjct: 232 VSG 231

[Close]

BLAST of Spg015861 vs. ExPASy TrEMBL
Match: A0A6J1I819 (heat stress transcription factor C-1-like OS=Cucurbita maxima OX=3661 GN=LOC111472225 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.4e-08
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 1   MMLEKDRARAQIGDKKRWLMISSSSSSPSTTTV-TTSLYAEDMEKKGNRRDFGANFLSPK 60
           MML+KDR  A IGDKKR LMISSSSSSPSTTT+ TTSL AE++E++G+ R    NF SP+
Sbjct: 172 MMLQKDRPGAHIGDKKRRLMISSSSSSPSTTTMTTTSLEAEEIEEEGSWR---PNFSSPE 231

Query: 61  VPG 63
           V G
Sbjct: 232 VSG 231

[Close]

BLAST of Spg015861 vs. ExPASy TrEMBL
Match: A0A5D3BPQ6 (Heat stress transcription factor C-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00650 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.2e-06
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1   MMLEKDRARAQIGDKKRWLMISSSSSSPSTTTVTTSLYAEDMEKKGNRRDFGANFLSPKV 60
           +ML KD  R Q+ +KKR LMISSSSSSPSTTT+T     E  E   N +DFG NF SP+V
Sbjct: 58  IMLHKDPTRLQLSEKKRRLMISSSSSSPSTTTLTEG--DEIEEDSNNPQDFGPNFSSPEV 117

Query: 61  PGRRTVSEGESS 73
            G   + E E +
Sbjct: 118 SGPWFLREAEGN 127

[Close]

BLAST of Spg015861 vs. ExPASy TrEMBL
Match: A0A1S3CJ61 (heat stress transcription factor C-1-like OS=Cucumis melo OX=3656 GN=LOC103501554 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.2e-06
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1   MMLEKDRARAQIGDKKRWLMISSSSSSPSTTTVTTSLYAEDMEKKGNRRDFGANFLSPKV 60
           +ML KD  R Q+ +KKR LMISSSSSSPSTTT+T     E  E   N +DFG NF SP+V
Sbjct: 173 IMLHKDPTRLQLSEKKRRLMISSSSSSPSTTTLTEG--DEIEEDSNNPQDFGPNFSSPEV 232

Query: 61  PGRRTVSEGESS 73
            G   + E E +
Sbjct: 233 SGPWFLREAEGN 242

[Close]

BLAST of Spg015861 vs. ExPASy TrEMBL
Match: A0A0A0LWD5 (HSF_DOMAIN domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G240590 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 1   MMLEKDRARAQIGDKKRWLMISSSSSSPSTTTVTTSLYAEDMEKKGNRRDFGANFLSPKV 60
           +ML KD  R Q  +KKR LMISSSSSSPSTTT+T     E  E   N++DFG N  SP+V
Sbjct: 173 IMLHKDPTRLQFAEKKRRLMISSSSSSPSTTTLTEG--DEIEEDSNNQQDFGPNLSSPEV 232

Query: 61  PGRRTVSEGESS 73
            G   + E E +
Sbjct: 233 CGPWFIGEAEGN 242

The following BLAST results are available for this feature:

BLAST of Spg015861 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933445.1	3.2e-08	68.25	heat stress transcription factor C-1-like [Cucurbita moschata]	[more]
XP_022973632.1	7.1e-08	66.67	heat stress transcription factor C-1-like [Cucurbita maxima]	[more]
XP_023530778.1	1.2e-07	66.67	heat stress transcription factor C-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_038879566.1	3.0e-06	55.56	heat stress transcription factor C-1-like [Benincasa hispida]	[more]
KAG7021846.1	3.0e-06	63.49	Heat stress transcription factor C-1b, partial [Cucurbita argyrosperma subsp. ar...	[more]

BLAST of Spg015861 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg015861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F4W8	1.5e-08	68.25	heat stress transcription factor C-1-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1I819	3.4e-08	66.67	heat stress transcription factor C-1-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A5D3BPQ6	4.2e-06	52.78	Heat stress transcription factor C-1-like OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3CJ61	4.2e-06	52.78	heat stress transcription factor C-1-like OS=Cucumis melo OX=3656 GN=LOC10350155...	[more]
A0A0A0LWD5	1.2e-05	51.39	HSF_DOMAIN domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G240590 ...	[more]

BLAST of Spg015861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg015861.1	Spg015861.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0043565	sequence-specific DNA binding