Spg015836 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg015836
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCysteine/Histidine-rich C1 domain family protein
Locationscaffold6: 45055131 .. 45055673 (-)
RNA-Seq ExpressionSpg015836
SyntenySpg015836
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTCCAACAAATCAATCCAACACAAGCATAATTTCAAACAGCAGAGATCAAAAGTCGAAGAAGCACTCACCGAAACTCACTCAGGCATTTCGTCGAACGTCTTCTCGGCACGCACCAGCGCCAAATCGAAACATGAATCGATCTCACCGATTCCGCCTCAGATCAACAACAACAAACATCAAGACGATTACGAACCTCAGATTCTCTGCTGCGGATGCGATCGGCCGATGATGTTGATCGGAGTGGAGAACTCGACTCTGTGCTACATTTGCAAGGCGACGCCATCGACGTACGTGTGTGCGCCATGTTCGAGCGGATTGATAAACTTTTTCGACAGAGGATGTGCGGAACTGCCGAGAGAGATCGATTATCCGTATCACCACCACGCTCTGAGGCTGAGATATCGAAAAAATTCTTACTGCTCCGCCTGTCTCCGGCGATCCGACGGCTTCAATTTTGGTTGCGAGAAATGTAAGTTCATTGTCGATGTTAAATGTGCTCTCAGAGAAGGCAAAGGCAAAGGCAAACCATATATGTAA

mRNA sequence

ATGGACTCCAACAAATCAATCCAACACAAGCATAATTTCAAACAGCAGAGATCAAAAGTCGAAGAAGCACTCACCGAAACTCACTCAGGCATTTCGTCGAACGTCTTCTCGGCACGCACCAGCGCCAAATCGAAACATGAATCGATCTCACCGATTCCGCCTCAGATCAACAACAACAAACATCAAGACGATTACGAACCTCAGATTCTCTGCTGCGGATGCGATCGGCCGATGATGTTGATCGGAGTGGAGAACTCGACTCTGTGCTACATTTGCAAGGCGACGCCATCGACGTACGTGTGTGCGCCATGTTCGAGCGGATTGATAAACTTTTTCGACAGAGGATGTGCGGAACTGCCGAGAGAGATCGATTATCCGTATCACCACCACGCTCTGAGGCTGAGATATCGAAAAAATTCTTACTGCTCCGCCTGTCTCCGGCGATCCGACGGCTTCAATTTTGGTTGCGAGAAATGTAAGTTCATTGTCGATGTTAAATGTGCTCTCAGAGAAGGCAAAGGCAAAGGCAAACCATATATGTAA

Coding sequence (CDS)

ATGGACTCCAACAAATCAATCCAACACAAGCATAATTTCAAACAGCAGAGATCAAAAGTCGAAGAAGCACTCACCGAAACTCACTCAGGCATTTCGTCGAACGTCTTCTCGGCACGCACCAGCGCCAAATCGAAACATGAATCGATCTCACCGATTCCGCCTCAGATCAACAACAACAAACATCAAGACGATTACGAACCTCAGATTCTCTGCTGCGGATGCGATCGGCCGATGATGTTGATCGGAGTGGAGAACTCGACTCTGTGCTACATTTGCAAGGCGACGCCATCGACGTACGTGTGTGCGCCATGTTCGAGCGGATTGATAAACTTTTTCGACAGAGGATGTGCGGAACTGCCGAGAGAGATCGATTATCCGTATCACCACCACGCTCTGAGGCTGAGATATCGAAAAAATTCTTACTGCTCCGCCTGTCTCCGGCGATCCGACGGCTTCAATTTTGGTTGCGAGAAATGTAAGTTCATTGTCGATGTTAAATGTGCTCTCAGAGAAGGCAAAGGCAAAGGCAAACCATATATGTAA

Protein sequence

MDSNKSIQHKHNFKQQRSKVEEALTETHSGISSNVFSARTSAKSKHESISPIPPQINNNKHQDDYEPQILCCGCDRPMMLIGVENSTLCYICKATPSTYVCAPCSSGLINFFDRGCAELPREIDYPYHHHALRLRYRKNSYCSACLRRSDGFNFGCEKCKFIVDVKCALREGKGKGKPYM
Homology
BLAST of Spg015836 vs. NCBI nr
Match: KAG6579395.1 (hypothetical protein SDJN03_23843, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.4 bits (376), Expect = 2.9e-32
Identity = 71/163 (43.56%), Postives = 93/163 (57.06%), Query Frame = 0

Query: 11  HNFKQQRSKVEEALTETHSGISSNVFSARTSAKSKHESISPIPPQINNNKHQDDYEPQIL 70
           H+  + R  + +   ET     S+  +   S KS              N  Q+  E  + 
Sbjct: 28  HSLVRTRPSIADLEDETPPSNQSSSSNTHNSTKS--------------NNQQERNEEGVS 87

Query: 71  CCGCDRPMMLIGVENSTLCYICKATPSTYVCAPCSSGLINFFDRGCAELPREIDYPYHHH 130
           CC C +P+  IGVE++TLCY+C    STY C PCS+G INFFDR C+ELP+EI YPYH H
Sbjct: 88  CCACHKPLTPIGVESTTLCYVCNKLHSTYFCGPCSNGWINFFDRRCSELPKEIHYPYHRH 147

Query: 131 ALRLRYRKNSYCSACLRRSDGFNFGCEKCKFIVDVKCALREGK 174
            L +  RKNS C  C +R   FN+GC+ C FIVD+KC L+E K
Sbjct: 148 RLTMSIRKNSNCWVCGKRCGAFNYGCDGCSFIVDIKCVLKEKK 176

BLAST of Spg015836 vs. NCBI nr
Match: XP_028056396.1 (uncharacterized protein LOC114260456 [Camellia sinensis] >THG20191.1 hypothetical protein TEA_005576 [Camellia sinensis var. sinensis])

HSP 1 Score: 71.6 bits (174), Expect = 7.6e-09
Identity = 47/127 (37.01%), Postives = 63/127 (49.61%), Query Frame = 0

Query: 54  PQINNNKHQDDYEPQILCCGCDRPMMLIGVENSTLCYICKATPST------YVCAPCSSG 113
           PQ+ N+ H     P ILC            ++  L Y C     T      YVC  C  G
Sbjct: 142 PQLPNHPH-----PLILC-----------YKDKNLTYKCTCCSLTIDGDCLYVCLQC-KG 201

Query: 114 LINFFDRGCAELPREIDYPYH-HHALRLRYRKNSY-----CSACLRRSDGFNFGCEKCKF 169
           L++     CAE+P +I++P+H  H+L L+ R   Y     CS C +R DGF + C KCKF
Sbjct: 202 LLH---HSCAEMPWKIEHPFHSSHSLFLQSRSGFYDREFICSLCCQRRDGFAYHCHKCKF 248

BLAST of Spg015836 vs. NCBI nr
Match: XP_035551576.1 (uncharacterized protein LOC109008056 [Juglans regia] >KAF5454028.1 hypothetical protein F2P56_023726 [Juglans regia])

HSP 1 Score: 70.1 bits (170), Expect = 2.2e-08
Identity = 34/91 (37.36%), Postives = 45/91 (49.45%), Query Frame = 0

Query: 81  IGVENSTLCYICKATPSTYVCAPCSSGLINFFDRGCAELPREIDYPYHHHALRLRYRKN- 140
           +G+       +    P  Y C  C      F  + C ELPR+I +P H H L LR +   
Sbjct: 348 VGINKKCNACMRSIFPPFYNCTQCGF----FLHKACVELPRKIRHPLHQHPLILRSKATF 407

Query: 141 -SYCSACLRRSDGFNFGCEKCKFIVDVKCAL 170
            S C  C R   GF + CEKCKF +DV+C+L
Sbjct: 408 CSVCKTCCRLCSGFTYNCEKCKFNIDVQCSL 434

BLAST of Spg015836 vs. NCBI nr
Match: XP_023897934.1 (uncharacterized protein LOC112009826 [Quercus suber])

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-08
Identity = 36/90 (40.00%), Postives = 49/90 (54.44%), Query Frame = 0

Query: 83  VENSTLCYICK---ATPSTYVCAPCSSGLINFFDRGCAELPREIDYPYHHHALRLRYRKN 142
           V N+ +C  C     TPS Y C    S    F    CA+LP+   +P H H L L YR  
Sbjct: 303 VPNNKICDGCGRAILTPSFYRCV--ESNCSFFLHIFCAKLPKIKRHPLHQHPLTLTYRPG 362

Query: 143 SYCSACLRRSDGFNFGCEKCKFIVDVKCAL 170
            +C AC +R +G  + CE+C F++DVKC+L
Sbjct: 363 FWCEACAQRCNGLVYYCERCIFVLDVKCSL 390

BLAST of Spg015836 vs. NCBI nr
Match: XP_023898489.1 (uncharacterized protein LOC112010378 [Quercus suber])

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-08
Identity = 36/90 (40.00%), Postives = 49/90 (54.44%), Query Frame = 0

Query: 83  VENSTLCYICK---ATPSTYVCAPCSSGLINFFDRGCAELPREIDYPYHHHALRLRYRKN 142
           V N+ +C  C     TPS Y C    S    F    CA+LP+   +P H H L L YR  
Sbjct: 303 VPNNKICDGCGRAILTPSFYRCV--ESNCSFFLHIFCAKLPKIKRHPLHQHPLTLTYRPG 362

Query: 143 SYCSACLRRSDGFNFGCEKCKFIVDVKCAL 170
            +C AC +R +G  + CE+C F++DVKC+L
Sbjct: 363 FWCEACAQRCNGLVYYCERCIFVLDVKCSL 390

BLAST of Spg015836 vs. ExPASy TrEMBL
Match: A0A4S4ETH4 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_005576 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.7e-09
Identity = 47/127 (37.01%), Postives = 63/127 (49.61%), Query Frame = 0

Query: 54  PQINNNKHQDDYEPQILCCGCDRPMMLIGVENSTLCYICKATPST------YVCAPCSSG 113
           PQ+ N+ H     P ILC            ++  L Y C     T      YVC  C  G
Sbjct: 142 PQLPNHPH-----PLILC-----------YKDKNLTYKCTCCSLTIDGDCLYVCLQC-KG 201

Query: 114 LINFFDRGCAELPREIDYPYH-HHALRLRYRKNSY-----CSACLRRSDGFNFGCEKCKF 169
           L++     CAE+P +I++P+H  H+L L+ R   Y     CS C +R DGF + C KCKF
Sbjct: 202 LLH---HSCAEMPWKIEHPFHSSHSLFLQSRSGFYDREFICSLCCQRRDGFAYHCHKCKF 248

BLAST of Spg015836 vs. ExPASy TrEMBL
Match: A0A6P9EWE7 (uncharacterized protein LOC109008056 OS=Juglans regia OX=51240 GN=LOC109008056 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-08
Identity = 34/91 (37.36%), Postives = 45/91 (49.45%), Query Frame = 0

Query: 81  IGVENSTLCYICKATPSTYVCAPCSSGLINFFDRGCAELPREIDYPYHHHALRLRYRKN- 140
           +G+       +    P  Y C  C      F  + C ELPR+I +P H H L LR +   
Sbjct: 348 VGINKKCNACMRSIFPPFYNCTQCGF----FLHKACVELPRKIRHPLHQHPLILRSKATF 407

Query: 141 -SYCSACLRRSDGFNFGCEKCKFIVDVKCAL 170
            S C  C R   GF + CEKCKF +DV+C+L
Sbjct: 408 CSVCKTCCRLCSGFTYNCEKCKFNIDVQCSL 434

BLAST of Spg015836 vs. ExPASy TrEMBL
Match: A0A4S4ETF5 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_005558 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.8e-08
Identity = 46/134 (34.33%), Postives = 62/134 (46.27%), Query Frame = 0

Query: 41  SAKSKHESISPIPPQINNNKHQDDYEPQILCCGCDRPMMLIGVENSTLCYICKATPSTYV 100
           + K+ H +   I  Q  +   Q ++    + C  D+ +    +   T C +       YV
Sbjct: 128 ATKNNHHN-KKIQFQFQHQNDQPNHPHPFILCHKDQNL----IYKCTCCDLVINEDCVYV 187

Query: 101 CAPCSSGLINFFDRGCAELPREIDYPYH-HHALRLRYRKNSY-----CSACLRRSDGFNF 160
           C  C   L N     C ELP EI +P+H  H L LR R  SY     CS C +R  GF +
Sbjct: 188 CLQCKGLLHN----SCLELPWEIKHPFHSSHPLVLRSRPGSYDREFICSVCCQRRHGFAY 247

Query: 161 GCEKCKFIVDVKCA 169
            C KCKF+VDV CA
Sbjct: 248 HCFKCKFVVDVHCA 252

BLAST of Spg015836 vs. ExPASy TrEMBL
Match: A0A7N2L4C4 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.8e-08
Identity = 49/158 (31.01%), Postives = 71/158 (44.94%), Query Frame = 0

Query: 24   LTETHSGISSNVFSARTSAKSKHESISPIPPQINNNKHQDD---YEPQILCCGCDRPMML 83
            L+E    I+   F         +ESI  +  ++N    ++D      +I     +  + L
Sbjct: 1275 LSENKEDINLLEFKVEDEVPQLNESIDSVTYKVNKFNTREDGTQIAAEIEHFSHEHVLKL 1334

Query: 84   IGVE--NSTLCYIC--KATPSTYVCAPCSSGLINFFDRGCAELPREIDYPYHHHALRL-- 143
               E  N+  CY C     P  Y C  CS     F    CA+LP++  +P H H L L  
Sbjct: 1335 TDDEVLNNQKCYACVRAILPPFYSCVNCSF----FLHESCAKLPQKKKHPLHQHPLTLLP 1394

Query: 144  --RYRKNSY-CSACLRRSDGFNFGCEKCKFIVDVKCAL 170
               YR   + C AC R  +GFN+GCE C F +DV+C+L
Sbjct: 1395 TSPYRSEIFWCDACWRECNGFNYGCETCDFSLDVQCSL 1428

BLAST of Spg015836 vs. ExPASy TrEMBL
Match: A0A2N9I7B7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48057 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.1e-08
Identity = 39/124 (31.45%), Postives = 61/124 (49.19%), Query Frame = 0

Query: 52  IPPQINNNKHQDDYEPQILCCGCDRPMMLIGVENSTLCYIC--KATPSTYVCAPCSSGLI 111
           IP +I +  H+ D +            +   +EN  +C  C     P  Y CA C+    
Sbjct: 276 IPIEIKHFAHEHDLQ------------LTTKLENDKICDGCIRSIFPPFYSCAQCNF--- 335

Query: 112 NFFDRGCAELPREIDYPYHHHALRLRYRKNSY----CSACLRRSDGFNFGCEKCKFIVDV 170
            F  + CAELPR+  +P H H+L L+   +S+    C+AC   ++GF + C+ C F +DV
Sbjct: 336 -FLHKSCAELPRKKRHPLHQHSLTLQPMSDSFDLVQCNACYHITNGFTYKCDVCNFTLDV 383

BLAST of Spg015836 vs. TAIR 10
Match: AT2G21840.1 (Cysteine/Histidine-rich C1 domain family protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-05
Identity = 33/102 (32.35%), Postives = 48/102 (47.06%), Query Frame = 0

Query: 83  VENSTLCYIC--KATPSTYVCAPCSSGLINFFDRGCAELPREIDYPYH-HHALRL----- 142
           +E    C +C  K   +   C  CS    +F    CAEL R   + +H +H+L L     
Sbjct: 406 LEEEGKCNMCGTKIHDNPCKCETCSFQSHDF----CAELGRPSKHQFHLNHSLTLLPNTP 465

Query: 143 RYRKNSYCSACLRRSDGFNFGCEKCKFIVDVKCALREGKGKG 177
           R+ +   C +C     GFN  C  C FI+D+ CAL++ K  G
Sbjct: 466 RWFRRK-CESCKDDIGGFNLFCRICNFIIDINCALKDKKMHG 502

BLAST of Spg015836 vs. TAIR 10
Match: AT4G01910.1 (Cysteine/Histidine-rich C1 domain family protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.6e-04
Identity = 26/83 (31.33%), Postives = 40/83 (48.19%), Query Frame = 0

Query: 89  CYICKATPSTYVCAPCSSGLINFFDRGCAE-LPREIDYPYH-HHALRLRYRKNSYCSACL 148
           C   +A    Y C  C      F  + C + +   I++P H +H L L      +C  C 
Sbjct: 29  CGHFEAISDGYYCKRCDF----FVHKTCGDGVSEYIEHPSHPNHTLELCSNLRFHCDLCG 88

Query: 149 RRSDGFNFGCEKCKFIVDVKCAL 170
           RR++  ++ CE C FIVD+ CA+
Sbjct: 89  RRTNYLSYYCEICGFIVDLHCAM 107

BLAST of Spg015836 vs. TAIR 10
Match: AT2G21830.1 (Cysteine/Histidine-rich C1 domain family protein )

HSP 1 Score: 42.7 bits (99), Expect = 3.5e-04
Identity = 30/105 (28.57%), Postives = 47/105 (44.76%), Query Frame = 0

Query: 83  VENSTLCYIC--KATPSTYVCAPCSSGLINFFDRGCAELPREIDYPYH-HHALRLRYR-- 142
           +E    C+IC  +   + + C  C+    NF    C EL +   + +H +H L L  +  
Sbjct: 402 LEGKEHCHICEKEILGNPWKCETCNFVTHNF----CVELGKPSRHRFHWNHLLTLMPKPV 461

Query: 143 --KNSYCSACLRRSDGFNFGCEKCKFIVDVKCALREGKGKGKPYM 181
               + C +C     GFN  C  C FI+ V CA+     KGK ++
Sbjct: 462 ATDMTSCKSCREDIKGFNLFCRICNFIIHVSCAM-----KGKRFL 497

BLAST of Spg015836 vs. TAIR 10
Match: AT4G16015.1 (Cysteine/Histidine-rich C1 domain family protein )

HSP 1 Score: 42.7 bits (99), Expect = 3.5e-04
Identity = 26/87 (29.89%), Postives = 44/87 (50.57%), Query Frame = 0

Query: 89  CYICKA------TPSTYVCAPCSSGLINFFDRGCAELPREIDYPYHHHALRLRYR--KNS 148
           C +CKA      + S Y C  C   +++   + CA+LP++   P+++    L     + S
Sbjct: 272 CMLCKACNYPIYSNSFYSCMECDDFILH---KKCADLPKKKIDPFYNMLTTLITNDIRIS 331

Query: 149 YCSACLRRSDGFNFGCEKCKFIVDVKC 168
            C+AC   S GF +  +  K I+DV+C
Sbjct: 332 ICNACQNVSQGFTYVSDDHKIILDVRC 355

BLAST of Spg015836 vs. TAIR 10
Match: AT5G42840.1 (Cysteine/Histidine-rich C1 domain family protein )

HSP 1 Score: 42.7 bits (99), Expect = 3.5e-04
Identity = 28/105 (26.67%), Postives = 45/105 (42.86%), Query Frame = 0

Query: 75  DRPMMLIGVENSTLCYICKATPSTYVCAPCSSGLINFFDRGCAEL--PREIDYPYH-HHA 134
           D P++ + +  +  C  C  +   Y C  C           CA +    EI +P H  H 
Sbjct: 124 DHPLIKVDLGANMPCDFCNESGIDYCCPRCRF----MIHERCASVFDSPEITHPSHVRHP 183

Query: 135 LRLRYR-----KNSYCSACLRRSDGFNFGCEKCKFIVDVKCALRE 172
           L+LR        N  C  C   +    + C+ CKF ++++CA+RE
Sbjct: 184 LKLRSNGAPDYTNLNCHICGDATGNLLYHCDICKFNLNMRCAIRE 224

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6579395.12.9e-3243.56hypothetical protein SDJN03_23843, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_028056396.17.6e-0937.01uncharacterized protein LOC114260456 [Camellia sinensis] >THG20191.1 hypothetica... [more]
XP_035551576.12.2e-0837.36uncharacterized protein LOC109008056 [Juglans regia] >KAF5454028.1 hypothetical ... [more]
XP_023897934.12.9e-0840.00uncharacterized protein LOC112009826 [Quercus suber][more]
XP_023898489.12.9e-0840.00uncharacterized protein LOC112010378 [Quercus suber][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A4S4ETH43.7e-0937.01Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0055... [more]
A0A6P9EWE71.1e-0837.36uncharacterized protein LOC109008056 OS=Juglans regia OX=51240 GN=LOC109008056 P... [more]
A0A4S4ETF51.8e-0834.33Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0055... [more]
A0A7N2L4C41.8e-0831.01Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A2N9I7B74.1e-0831.45Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48057 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G21840.11.1e-0532.35Cysteine/Histidine-rich C1 domain family protein [more]
AT4G01910.11.6e-0431.33Cysteine/Histidine-rich C1 domain family protein [more]
AT2G21830.13.5e-0428.57Cysteine/Histidine-rich C1 domain family protein [more]
AT4G16015.13.5e-0429.89Cysteine/Histidine-rich C1 domain family protein [more]
AT5G42840.13.5e-0426.67Cysteine/Histidine-rich C1 domain family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004146DC1PFAMPF03107C1_2coord: 126..168
e-value: 3.0E-9
score: 37.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableSUPERFAMILY57889Cysteine-rich domaincoord: 97..169

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg015836.1Spg015836.1mRNA