Spg015762 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg015762
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold10: 18705429 .. 18706436 (-)
RNA-Seq Expression	Spg015762
Synteny	Spg015762

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAAACAAGAGGAAGTAAGGGAAGGGATAATGAGGAAGAAGAGGTGCCAGTTACCCCTGAGGCACTGAAGACAAAAGCGAAGAAAAAGAAAACACCGGAGGAGAGAGAAGCCAAGAGGCAAAGAAGACAACATAGGGCTGAAGTTGAAGAGGTAGTACAAAAGGTAGTTGAAGACATTGCCGATGTTATGGTTGAGGAGGAAAATCCGAAGGAACCTGAGGAACAGAACCTTGGAGAGAAGGATCTGATAATCGAAGATCCGCAAGAAGTTCAAGAAAAACAGATAGAAGATGTGCAAGAAAGAGGCAACGAGCAGGAGGTGCAAGAGCAAGAGGCTCGAGTCGAGGTGATTATGCCGGAGGTACCCCGTCGTCGCCGTTGAAAGCAGAAAGCCGATCGTGTCAAGGTGGTTCGGACTGATACTCCTTCGCCGCCGACAACTGATTCTGAGAAAGAAAATACGGGAAGAGAAGAGCAGGAGAAAAAGGAGGCAGAGGACAAAGCAAGAGAGGAAACAGAAAAGAAAGCAGAGGAAGAAATTTTGCCCAAACAGAGGGAAGACAAGGGCAAAGGTATTGCTGAAGCATCGCCTGAAGCTGAAGATATTGAAATTGAGGAGCCACGGTTGTCGTACAACCGCTTCATCAATAATCTTGCCCGAGCAAAGTATATAGAGATGCTGAAAAGAGACTTTTTGTTTGAACGGGGATTTGGTGATGATCTGCCGCGTTTCTTGAGAACAGGAATAGCAAACCATGGCTGGAGTCAGTTCTGCGCAAAGCCGGAACCGGTCAATTCCAATATTGTCCGTGAATTTTATGCAAATATTGATGATCAAGAGGGATTCCAGGCTATCGTCCGAGGGGTGCCCATTGACTGGAGCCCAGGAGCTATCAATTCTTTATTCGACCTCCAAGACTTTCCGCACGCAAGTTTCAACGAGATGGTGGTAGAGCCATCGAATGACCAGTTGAATGCGGCTGTCAGGGAGGTTGGCATTTAA

mRNA sequence

ATGGCGAAAACAAGAGGAAGTAAGGGAAGGGATAATGAGGAAGAAGAGGTGCCAGTTACCCCTGAGGCACTGAAGACAAAAGCGAAGAAAAAGAAAACACCGGAGGAGAGAGAAGCCAAGAGGCAAAGAAGACAACATAGGGCTGAAGTTGAAGAGGTAGTACAAAAGGTAGTTGAAGACATTGCCGATGTTATGGTTGAGGAGGAAAATCCGAAGGAACCTGAGGAACAGAACCTTGGAGAGAAGGATCTGATAATCGAAGATCCGCAAGAAGTTCAAGAAAAACAGATAGAAGATGTGCAAGAAAGAGGCAACGAGCAGGAGGTGCAAGAGCAAGAGGCTCGAGTCGAGGTGGTTCGGACTGATACTCCTTCGCCGCCGACAACTGATTCTGAGAAAGAAAATACGGGAAGAGAAGAGCAGGAGAAAAAGGAGGCAGAGGACAAAGCAAGAGAGGAAACAGAAAAGAAAGCAGAGGAAGAAATTTTGCCCAAACAGAGGGAAGACAAGGGCAAAGGTATTGCTGAAGCATCGCCTGAAGCTGAAGATATTGAAATTGAGGAGCCACGGTTGTCGTACAACCGCTTCATCAATAATCTTGCCCGAGCAAAGTATATAGAGATGCTGAAAAGAGACTTTTTGTTTGAACGGGGATTTGGTGATGATCTGCCGCGTTTCTTGAGAACAGGAATAGCAAACCATGGCTGGAGTCAGTTCTGCGCAAAGCCGGAACCGGTCAATTCCAATATTGTCCGTGAATTTTATGCAAATATTGATGATCAAGAGGGATTCCAGGCTATCGTCCGAGGGGTGCCCATTGACTGGAGCCCAGGAGCTATCAATTCTTTATTCGACCTCCAAGACTTTCCGCACGCAAGTTTCAACGAGATGGTGGTAGAGCCATCGAATGACCAGTTGAATGCGGCTGTCAGGGAGGTTGGCATTTAA

Coding sequence (CDS)

ATGGCGAAAACAAGAGGAAGTAAGGGAAGGGATAATGAGGAAGAAGAGGTGCCAGTTACCCCTGAGGCACTGAAGACAAAAGCGAAGAAAAAGAAAACACCGGAGGAGAGAGAAGCCAAGAGGCAAAGAAGACAACATAGGGCTGAAGTTGAAGAGGTAGTACAAAAGGTAGTTGAAGACATTGCCGATGTTATGGTTGAGGAGGAAAATCCGAAGGAACCTGAGGAACAGAACCTTGGAGAGAAGGATCTGATAATCGAAGATCCGCAAGAAGTTCAAGAAAAACAGATAGAAGATGTGCAAGAAAGAGGCAACGAGCAGGAGGTGCAAGAGCAAGAGGCTCGAGTCGAGGTGGTTCGGACTGATACTCCTTCGCCGCCGACAACTGATTCTGAGAAAGAAAATACGGGAAGAGAAGAGCAGGAGAAAAAGGAGGCAGAGGACAAAGCAAGAGAGGAAACAGAAAAGAAAGCAGAGGAAGAAATTTTGCCCAAACAGAGGGAAGACAAGGGCAAAGGTATTGCTGAAGCATCGCCTGAAGCTGAAGATATTGAAATTGAGGAGCCACGGTTGTCGTACAACCGCTTCATCAATAATCTTGCCCGAGCAAAGTATATAGAGATGCTGAAAAGAGACTTTTTGTTTGAACGGGGATTTGGTGATGATCTGCCGCGTTTCTTGAGAACAGGAATAGCAAACCATGGCTGGAGTCAGTTCTGCGCAAAGCCGGAACCGGTCAATTCCAATATTGTCCGTGAATTTTATGCAAATATTGATGATCAAGAGGGATTCCAGGCTATCGTCCGAGGGGTGCCCATTGACTGGAGCCCAGGAGCTATCAATTCTTTATTCGACCTCCAAGACTTTCCGCACGCAAGTTTCAACGAGATGGTGGTAGAGCCATCGAATGACCAGTTGAATGCGGCTGTCAGGGAGGTTGGCATTTAA

Protein sequence

MAKTRGSKGRDNEEEEVPVTPEALKTKAKKKKTPEEREAKRQRRQHRAEVEEVVQKVVEDIADVMVEEENPKEPEEQNLGEKDLIIEDPQEVQEKQIEDVQERGNEQEVQEQEARVEVVRTDTPSPPTTDSEKENTGREEQEKKEAEDKAREETEKKAEEEILPKQREDKGKGIAEASPEAEDIEIEEPRLSYNRFINNLARAKYIEMLKRDFLFERGFGDDLPRFLRTGIANHGWSQFCAKPEPVNSNIVREFYANIDDQEGFQAIVRGVPIDWSPGAINSLFDLQDFPHASFNEMVVEPSNDQLNAAVREVGI

Homology

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BLAST of Spg015762 vs. ExPASy TrEMBL
Match: A0A4Q3ENY7 (Uncharacterized protein OS=Sphingobacteriaceae bacterium OX=2021370 GN=EOP45_09925 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.2e-08
Identity = 41/133 (30.83%), Postives = 65/133 (48.87%), Query Frame = 0


Query: 191 LSYNR--FINNLARAKYIEMLKRDFLFERGF----GDDLPRFLRTGIANHGWSQFCAKPE 250
           + YN   F +  A  +Y  +++R  +FERG        +   +   I    W +FCA PE
Sbjct: 1   MDYNSRVFTSKAAEERYDILVQRSPIFERGLKVSSTTPIGSQINNTIEGFSWRKFCATPE 60

Query: 251 -PVNSNIVREFYANIDDQEGFQAIVRGVPIDWSPGAINSLFDLQD--FPHASFNEMVVEP 310
              N  ++ EFYAN+ D E     VRGV +D S GAIN+L    D  F +  + + +  P
Sbjct: 61  HKANVTLMYEFYANLPDHEDDVVTVRGVDVDCSVGAINALLGTPDIEFENEGYRQWLRNP 120

Query: 311 SNDQLNAAVREVG 315
           + D++ + +   G
Sbjct: 121 NLDEMLSVLTTPG 133

The following BLAST results are available for this feature:

BLAST of Spg015762 vs.


Match Name	E-value	Identity	Description

BLAST of Spg015762 vs.


Match Name	E-value	Identity	Description

BLAST of Spg015762 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Q3ENY7	7.2e-08	30.83	Uncharacterized protein OS=Sphingobacteriaceae bacterium OX=2021370 GN=EOP45_099...	[more]

BLAST of Spg015762 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 136..163
None	No IPR available	COILS	Coil	Coil	coord: 36..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..182
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..182
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg015762.1	Spg015762.1	mRNA