Spg015712 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg015712
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Gag-pol polyprotein
Location	scaffold10: 18974668 .. 18979034 (-)
RNA-Seq Expression	Spg015712
Synteny	Spg015712

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTTTAGCTCGTCCTTAAGATACCTCTTATATGTTAAGCATTGCCCCTCCAATGAAGAGGTTCTACAAGACAACGACGACAAGGTCATGGCAGAGGTGGTAGAGGACGAGCACTCCCAGAATAGATAGACCTGCCATGGACCCTTAGGTGAGTAATCAACCAATAGGTTAGATGCTCTCTAAGCCAGCGCCTTTAGCACAAACAACTTGACCTTGGAGGTTTCTCAGATTATTAGTGGCTATGGTATCTAGAATAGCATGCGCTTTGTTAGCAGACTTATTCAGAAAAGATCCATTTGCAGATGCGTTTACCAGTGCCTTTGAAGCTTGATCTAACCCACTATAAAAATGCTCCAAAATAATGCAAGCAGGCAATCCACGGTGTGGACACTTTCGAACCAGCCTCTGGAAACTTTCCCAAGCTGCATCCAAAGGTTCATTGTAAGACTGTCTGAAAGCAATGATCTCTGCTCTGTACTTGGCATTCTTATTGGAGGGAAAAAACTTCTCCAAGAACTTCTCTGCCAAATCATTCCAAGAGGTGGTGGAGTTTGGAGGAAATGAGTCCAACTAGGCTTTAGCATCTCCATGTAAAGAAAACGGAAAAAGTTTTAGCTTTAAAGTATCTTCTAGCACTCCTGTTTCTTTAAAAGAATTGCAAACTCTCAAGAATAATTTAATATGCTTGTGTGGATCCTCATTTGAAAGTCCTGATAATTGGCCCATCGTATTTAACATCTGGAACATCACTGGTTTAAGCTAAAATTGTGGAGCATCAATTGGTGGCTCCAAGATTCCTGGATTCAATGTCTGAAAAACTGGTAAAGCGTAGTCCCTTATTGCTCGGTTTTGATCTTCTGCAATGTAGATCGAGTTTTCTTGTTGTGGCACCGGTGGAACTGGAGGAACAGGACGAATTCTCCCGCCATTCTGCTCCCTTCCACGATCTTGTGGATCAACATGAGGCTCGACTCCAGGAGGATCCATTGGAAACTCTTGAATGTAAGATGCTTCCTCTAGAAATTCCTGTGCGCTCAACTCTTGTTGCTTCTTCTTCTTTCGTCTCTGTTCCTTCCTTCGACGACGAAAGGTTCTTTCTATCTCTCGATCAATGTCAAGGACTGGATACCCCTTGCTCGAGCACTAACTCCAACCTACAAAAGAAAAAAAAATGCAAACCGAAGTCAAATTCCCTTTGAGATAGAAATGCAGTCGCAATTTGATAGCAATTTTAAAAACAAATTGTTGGGTTTTATGCCTTAAAACTCGTAGATAGTGAATGTAAACAAATTGTATACTTGTTTCAATAAAGTGTTATTGAGTTTCTACAATAAAGTGTTATTGTTAAATATTGCACAGTTTGACCCAAATCCAATAAACTAAGATCCATGGTTGTTTGTATGTAACTTGAACTTGTATGTGGGGACATACGGGGATCGGTGTTCAAGTAACAACCTAAAAGGTCTATAGTACAGGGATAAGACTGGGTACCTTATCCTGGTAACACTATGTGATACGGCCCGCTTTGTATTCGATACAGACGTATTGATCCAAGGCATCCATGTAGGAAACATGCGAGCGGGGGTATCCTATGCAATGAGTTTGCATAATACCGGACCACGAAATAGTAAACCACTAGATATAACACCGTTAACTAGTTAGGTTACTGTTTCAATAGGATGACCTAGGTAACTCAGTCTTAATCCTGAGTGTGTCATGAACTCCTTCTCATGAGGGATTGTCCTTTGATTAGCATGGGTGAGAGTGGCCAATACGTCGACTCAATATGCCTTCCTTTTTGGGGACGAGACCGAGTGGGAGGCTGGGGACATGACAACACAAAAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTGTTCCCTTAAGTGGTGACTCCGGGACTTGAACAAAGGGATCCCGCCCTCTCACTGGCCCGAGAGGGACTTTCTGTTTAATGGTTGGACCATAAACAGGTTGTTCATTAGAGGAGCGCTGGTACTTAAGGAGACAGATGTAACACAGGGGTAAAACGGTAATTTGACCCAGTCATGATTACGAACACTCGTGAAGGATTGACTTACCGGTATAGGTCTATATCCGTGGACACAGAAATGTTCTACAGTGAGAAGAGTTCAGCTGTGGGTCTTTAGTGGAATGACCCACAGTTAATGAATATTGGTTAACTTGATTAATGAGTTTAATCGGTTAACCTCATATCATTGGAGCTTCTGATCTGTAGGTCCATTAGGTCCCCCTGCTAGCTCGTAAAGAGTAATTAGGAACAATTATATCTTGAGAGAATTTGAATAGTTCAAATTTATATTGGGAATTAAAGTTAATTGTATGAGATACAAATTAATATAATGTATAATGATACATTAAAATATAAAGTCTAATTTGAAATTAAACTTTATTATTATGAGAGAAATAAATATTTGAAGAAGTTCAAATATCAATATGAATTTGATTCATATTAAATTTATAGGATATAAGAGAATTGGAAGGAGTTCCAATTTCAATATGAATTTTATTCATATTATAGAATTAATTAATTGAAGGCCTGAAATTAAATATATGATATTTAATTGGATAATTAATTAATTAACTAATAGAAGGTCTGAAATTAAATATATGATATTTAATTGGTGATTAATTAATTTAAAGAATTAATTAATTGGAAATTAATCATTTATGGAAATGATTTAATCACTTATGGAAGTGATCAATCATTTATGGAAAAGATTAATCAATTATGGAATTGATTGGTTATGGAATTGATTAATTATGGAAAAGATTAAATCAATTAGGGAAATAATTGATTTTAAATGAATATTTTATTCATGGCCTTTCTCCTATAAATAGAACACTAACCCTAGGGTTTATGTGATACAAGAACATATGGCCACCATAAGGCCCTCTCATATTCTCTTAACTCAAGAACTCTAGGGAGAATTTTCTCTCTAGAGTTTTTCCCATTCAAGATTAGGTAGTCCCACAACTACGTTCCTAATCTCAGAGTTATAGCGGGGAAGATCAAATGGTGGTGTTCTTCGTTGTTGTTGTTGAAGGAAAAATTTTGTCCAATCACAAATTGCCACGTCATTATCTAAAATTAATGACAAAATTACGAATAATTAAATTTGGGACCGATTATAAAGTGACATGTGTCCCAAATTTAATTTGAAGACAAAGTTGACCAATTATAAATTTAAAGAGCCAAATTTCGATTTGATCAATTAATTAGAAAATAAATTATTTTGATCAAATTAATTAATTTGACCAATTAATTAACAAAATAATTAATTGGATCAAATTTCGGTCTTTTAAATGTCTGGGTCATATGGTTTTGGGTCAAATATGAACCGAACCCAAGACTAAAATGGTTGAGCCCAAGACCGATAAAGTCCAAGCCCAAGTTGTTAGGCCCGAAAGTCACCAGGGCCCATCCAGCGAGAACTCTATAAATAGAGGGGTTCTCCTCCATTTCAAGGGTTCAGAAATTTTAGACAGTTCAGAAATTCTAGACTCTCACAAAGACAAGAGTTTAGAATTTTAAAGCTCTCAAGCAGAACCAAAGAATTCAGAGAGATTCCACCAAGTCTGAAGACCGAAGACTCTCTGCAATCCATATAATTCAAGTGTTGAACACCTCTTGAAGACCAAACACTCCTCAAGACTTCAACACTCCTTGAAGATCAAAGACTCTTCAAGACATCAACACTTCTTGAAGACCAAACATTCTTCAAGACTTCAACATTCCTTGAAGATCAAAAACTCTTCAGGACATCAACACTTCTGGAAGACTGAAGACTCCTTCAAGACTGGAAGACTTCAAGCTTCAAGAATCCATTAAAGCGTCAGACTCGAGATCAAGCGTTCCAGCCCTCGAGTGAAACAAACTCACACACATAAGAGAGAGAATCAGAGGATTAAAGTTAGAGATTGTACACCCACACGCATACAAACATCAATTCAATATATTGTTTATTCCACGTGTCTCCATCTCCGAAGTTACGTGTGAACAAATTGGCACGCCCGGTGGGATCATCTCTACCTCTCATCTCTTTCTCTTATCTCAAAACATAAGTGAAAACATGTCTTTCAAGACTTCTCCAATGACTGCTGCCATGAACAACTTTTACACGGGTTCTACTACCTATTGTTGCTTCAATGAAATGAGGTTGCAAGAAGATAAAACTCCTATCATTGCAAGCGGTGAAATAACATTGCAGGGGGCATGTACTGATGGCAAGTTTATTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTACGGAAGAAAGAATGGCTGAGATGTAG

mRNA sequence

ATGATTTTTAGCTCGTCCTTAAGATACCTCTTATATGTTAAGCATTGCCCCTCCAATGAAGAGGTTCTACAAGACAACGACGACAAGGTCATGGCAGAGGAGGATCCATTGGAAACTCTTGAATGTAAGATGCTTCCTCTAGAAATTCCTGTGCGCTCAACTCTTGTTGCTTCTTCTTCTTTCGTCTCTGTTCCTTCCTTCGACGACGAAAGGGATAAGACTGGGTACCTTATCCTGGTAACACTATGTGATACGGCCCGCTTTGTATTCGATACAGACGTATTGATCCAAGGCATCCATGTAGGAAACATGCGAGCGGGGGTATCCTATGCAATGACATGGGTGAGAGTGGCCAATACGTCGACTCAATATGCCTTCCTTTTTGGGGACGAGACCGAGTGGGAGGCTGGGGACATGACAACACAAAAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTTCATGATTACGAACACTCGTGAAGGATTGACTTACCGGTATAGGTCTATATCCGTGGACACAGAAATGTTCTACAGTGAGAAGAGTTCAGCTGGGGCATGTACTGATGGCAAGTTTATTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTACGGAAGAAAGAATGGCTGAGATGTAG

Coding sequence (CDS)

ATGATTTTTAGCTCGTCCTTAAGATACCTCTTATATGTTAAGCATTGCCCCTCCAATGAAGAGGTTCTACAAGACAACGACGACAAGGTCATGGCAGAGGAGGATCCATTGGAAACTCTTGAATGTAAGATGCTTCCTCTAGAAATTCCTGTGCGCTCAACTCTTGTTGCTTCTTCTTCTTTCGTCTCTGTTCCTTCCTTCGACGACGAAAGGGATAAGACTGGGTACCTTATCCTGGTAACACTATGTGATACGGCCCGCTTTGTATTCGATACAGACGTATTGATCCAAGGCATCCATGTAGGAAACATGCGAGCGGGGGTATCCTATGCAATGACATGGGTGAGAGTGGCCAATACGTCGACTCAATATGCCTTCCTTTTTGGGGACGAGACCGAGTGGGAGGCTGGGGACATGACAACACAAAAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTTCATGATTACGAACACTCGTGAAGGATTGACTTACCGGTATAGGTCTATATCCGTGGACACAGAAATGTTCTACAGTGAGAAGAGTTCAGCTGGGGCATGTACTGATGGCAAGTTTATTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTACGGAAGAAAGAATGGCTGAGATGTAG

Protein sequence

MIFSSSLRYLLYVKHCPSNEEVLQDNDDKVMAEEDPLETLECKMLPLEIPVRSTLVASSSFVSVPSFDDERDKTGYLILVTLCDTARFVFDTDVLIQGIHVGNMRAGVSYAMTWVRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLLGEVDEFMITNTREGLTYRYRSISVDTEMFYSEKSSAGACTDGKFIVKYNPLFEPDSDIVTVMMTETRTTEERMAEM

Homology

[Close]

BLAST of Spg015712 vs. NCBI nr
Match: KAA0040839.1 (uncharacterized protein E6C27_scaffold333G00600 [Cucumis melo var. makuwa] >TYK17815.1 uncharacterized protein E5676_scaffold306G00640 [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-08
Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 84  DTARFVFDTDVLIQGIHVGNMRAGVSYAMTWVRVANTSTQYAFLFGDETEWEAGDMTTQK 143
           D A FVFDT+ LI+ +HV +MR         VRVA   TQYA+ FGD+T+W AG++ TQ 
Sbjct: 2   DMAHFVFDTNALIKRVHVDDMRVK-------VRVAKLPTQYAYHFGDKTKWGAGNIITQD 61

Query: 144 GIHSFPLLGEV 155
            IHSF  LG +
Sbjct: 62  EIHSFATLGSI 65

[Close]

BLAST of Spg015712 vs. NCBI nr
Match: KAA0065950.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK30278.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 2.2e-05
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 115 VRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLLG 153
           VRVA   TQYA+ FGD+TEW AG++ TQ GIHSFPLLG
Sbjct: 97  VRVARLPTQYAYHFGDKTEWGAGNIITQDGIHSFPLLG 134

[Close]

BLAST of Spg015712 vs. NCBI nr
Match: KAA0067030.1 (Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa] >TYK26266.1 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 2.2e-05
Identity = 32/68 (47.06%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 84  DTARFVFDTDVLIQGIHVGNMRAGVSYAMTWVRVANTSTQYAFLFGDETEWEAGDMTTQK 143
           DTA FVFDT+ LI+ +H                     TQYA+ FGD+TEW AG++ TQ 
Sbjct: 2   DTAHFVFDTNTLIKCVH---------------------TQYAYHFGDKTEWGAGNIITQD 48

Query: 144 GIHSFPLL 152
           GIHSFP L
Sbjct: 62  GIHSFPPL 48

[Close]

BLAST of Spg015712 vs. NCBI nr
Match: KAA0025994.1 (retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 2.5e-04
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 108 VSYAMTWVRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLLG 153
           V   ++ VRVA   TQYA+ FGD+TEW AG+  TQ GIHSFP LG
Sbjct: 216 VPVEISLVRVARLPTQYAYHFGDKTEWGAGNTITQDGIHSFPPLG 260

[Close]

BLAST of Spg015712 vs. NCBI nr
Match: KAA0042877.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK05280.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 3.2e-04
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 115 VRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLLG 153
           VRVA  STQYA+ FGD+TEW A ++ TQ GIHSFP LG
Sbjct: 756 VRVAKLSTQYAYHFGDKTEWGAENIITQDGIHSFPPLG 793

[Close]

BLAST of Spg015712 vs. ExPASy TrEMBL
Match: A0A5A7THR9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00640 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.1e-09
Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 84  DTARFVFDTDVLIQGIHVGNMRAGVSYAMTWVRVANTSTQYAFLFGDETEWEAGDMTTQK 143
           D A FVFDT+ LI+ +HV +MR         VRVA   TQYA+ FGD+T+W AG++ TQ 
Sbjct: 2   DMAHFVFDTNALIKRVHVDDMRVK-------VRVAKLPTQYAYHFGDKTKWGAGNIITQD 61

Query: 144 GIHSFPLLGEV 155
            IHSF  LG +
Sbjct: 62  EIHSFATLGSI 65

[Close]

BLAST of Spg015712 vs. ExPASy TrEMBL
Match: A0A5A7VIJ2 (Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00320 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-05
Identity = 32/68 (47.06%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 84  DTARFVFDTDVLIQGIHVGNMRAGVSYAMTWVRVANTSTQYAFLFGDETEWEAGDMTTQK 143
           DTA FVFDT+ LI+ +H                     TQYA+ FGD+TEW AG++ TQ 
Sbjct: 2   DTAHFVFDTNTLIKCVH---------------------TQYAYHFGDKTEWGAGNIITQD 48

Query: 144 GIHSFPLL 152
           GIHSFP L
Sbjct: 62  GIHSFPPL 48

[Close]

BLAST of Spg015712 vs. ExPASy TrEMBL
Match: A0A5A7VFG5 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold344G00390 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-05
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 115 VRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLLG 153
           VRVA   TQYA+ FGD+TEW AG++ TQ GIHSFPLLG
Sbjct: 97  VRVARLPTQYAYHFGDKTEWGAGNIITQDGIHSFPLLG 134

[Close]

BLAST of Spg015712 vs. ExPASy TrEMBL
Match: A0A5A7SJY0 (Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003160 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-04
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 108 VSYAMTWVRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLLG 153
           V   ++ VRVA   TQYA+ FGD+TEW AG+  TQ GIHSFP LG
Sbjct: 216 VPVEISLVRVARLPTQYAYHFGDKTEWGAGNTITQDGIHSFPPLG 260

[Close]

BLAST of Spg015712 vs. ExPASy TrEMBL
Match: A0A5D3C1P5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00970 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-04
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 115 VRVANTSTQYAFLFGDETEWEAGDMTTQKGIHSFPLLG 153
           VRVA  STQYA+ FGD+TEW A ++ TQ GIHSFP LG
Sbjct: 756 VRVAKLSTQYAYHFGDKTEWGAENIITQDGIHSFPPLG 793

The following BLAST results are available for this feature:

BLAST of Spg015712 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040839.1	1.3e-08	50.70	uncharacterized protein E6C27_scaffold333G00600 [Cucumis melo var. makuwa] >TYK1...	[more]
KAA0065950.1	2.2e-05	71.05	ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK30278.1 ty1-cop...	[more]
KAA0067030.1	2.2e-05	47.06	Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa] >T...	[more]
KAA0025994.1	2.5e-04	60.00	retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]	[more]
KAA0042877.1	3.2e-04	68.42	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK05280.1 gag-pol polyprotein [...	[more]

BLAST of Spg015712 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg015712 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7THR9	6.1e-09	50.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VIJ2	1.1e-05	47.06	Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa O...	[more]
A0A5A7VFG5	1.1e-05	71.05	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SJY0	1.2e-04	60.00	Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa...	[more]
A0A5D3C1P5	1.6e-04	68.42	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G...	[more]

BLAST of Spg015712 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg015712.1	Spg015712.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding