Spg015676 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg015676
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase
Location	scaffold10: 20169301 .. 20170263 (-)
RNA-Seq Expression	Spg015676
Synteny	Spg015676

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACAGTGAGTGACAAAACGAATTTCGAAAATTGTTTCCAAACGGTTGTTCATGTTTAGATGTTTTACATGCTTTCTATGAATGATACATGATTTCTTTGAATGGTTCCAAGCATAAGTGTTGAGCTTAGATTTTCTAATGAGGTTTATATACGAGCACGTGGCTAATGACTTTGTGAAAAGTAGTTGAAATGATATCTTTTAAAGTAAAATATGTATTAGCAAGTACTGTTTAAAGATTTTTCAGTTTTTTTACGAGCAAGCTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCCATTGACTACATGACTGAGATATTGAGCCTGAGGCTATATGGTACCGTGTGCTCACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGTTGGGCGGGACCCACTATGACAAAGACGATGGGAGTGTTGGGCAGACCCCACTACATCGTAGAGCTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTTGATTTGTCATGTTAGTTAAGATGTTTTATATAATTGATATGCCTTGCTGAATTTTAATAACGTACTTGCGAGTTATTTGAGAAAGCTTTTATCGTTACACGTTTATGTTAAACGCTTGATTGAACAGATTTATACGTCTAAAGGTTTATCACGTGTTCCGATTTGCAAATCTACAGTTTTTAAAGTTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAGAATGTTTTCCCACTTTTCAGGTAGAGATCGAGCTCCTGGTGCCTGATACACTGCCCATGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGTTTTT

mRNA sequence

CCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACACCTGAGGCTATATGGTACCGTGTGCTCACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCTGGTGCCTGATACACTGCCCATGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGTTTTT

Coding sequence (CDS)

CCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACACCTGAGGCTATATGGTACCGTGTGCTCACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCTGGTGCCTGATACACTGCCCATGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGTTTTT

Protein sequence

PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAESSRSSSSTWVELYIESVYIVNVF

Homology

[Close]

BLAST of Spg015676 vs. NCBI nr
Match: KAA0038923.1 (RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 3.8e-16
Identity = 54/78 (69.23%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 1   PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAES 60
           PRGNR SLQT KL KT             PLLTLSVLRDNDAVVEIELLV DTLPMSAES
Sbjct: 344 PRGNRPSLQTGKLDKTV----------IFPLLTLSVLRDNDAVVEIELLVSDTLPMSAES 403

Query: 61  SRSSSSTWVELYIESVYI 79
             S+SSTW+ELY ESV++
Sbjct: 404 FESNSSTWLELYFESVHV 411

[Close]

BLAST of Spg015676 vs. NCBI nr
Match: TYJ98714.1 (RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 3.8e-16
Identity = 54/78 (69.23%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 1   PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAES 60
           PRGNR SLQT KL KT             PLLTLSVLRDNDAVVEIELLV DTLPMSAES
Sbjct: 272 PRGNRPSLQTGKLDKTV----------IFPLLTLSVLRDNDAVVEIELLVSDTLPMSAES 331

Query: 61  SRSSSSTWVELYIESVYI 79
             S+SSTW+ELY ESV++
Sbjct: 332 FESNSSTWLELYFESVHV 339

[Close]

BLAST of Spg015676 vs. NCBI nr
Match: KAA0057197.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 2.1e-14
Identity = 49/78 (62.82%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 1   PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAES 60
           PR NR SLQT +L KT             PL TLSVLRDNDA+VEIELLVPDTLP SAES
Sbjct: 376 PRENRPSLQTGELDKTV----------IFPLSTLSVLRDNDAIVEIELLVPDTLPTSAES 435

Query: 61  SRSSSSTWVELYIESVYI 79
           S S+S+TW+ELY ES+++
Sbjct: 436 SESNSNTWLELYFESIHV 443

[Close]

BLAST of Spg015676 vs. NCBI nr
Match: TYK18765.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 2.1e-14
Identity = 49/78 (62.82%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 1   PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAES 60
           PR NR SLQT +L KT             PL TLSVLRDNDA+VEIELLVPDTLP SAES
Sbjct: 376 PRENRPSLQTGELDKTV----------IFPLSTLSVLRDNDAIVEIELLVPDTLPTSAES 435

Query: 61  SRSSSSTWVELYIESVYI 79
           S S+S+TW+ELY ES+++
Sbjct: 436 SESNSNTWLELYFESIHV 443

[Close]

BLAST of Spg015676 vs. NCBI nr
Match: TYK01618.1 (uncharacterized protein E5676_scaffold451G002250 [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 4.7e-14
Identity = 51/78 (65.38%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 1   PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAES 60
           PR NR SLQT +L KT             PL TLSVLRDNDAVVEIELLVP+TLP SAES
Sbjct: 76  PRENRPSLQTGELDKTV----------IFPLSTLSVLRDNDAVVEIELLVPNTLPTSAES 135

Query: 61  SRSSSSTWVELYIESVYI 79
           S S+SSTW+ELY ESV++
Sbjct: 136 SISNSSTWLELYFESVHV 143

[Close]

BLAST of Spg015676 vs. ExPASy TrEMBL
Match: A0A5D3BI39 (RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00050 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.9e-16
Identity = 54/78 (69.23%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 1   PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAES 60
           PRGNR SLQT KL KT             PLLTLSVLRDNDAVVEIELLV DTLPMSAES
Sbjct: 272 PRGNRPSLQTGKLDKTV----------IFPLLTLSVLRDNDAVVEIELLVSDTLPMSAES 331

Query: 61  SRSSSSTWVELYIESVYI 79
             S+SSTW+ELY ESV++
Sbjct: 332 FESNSSTWLELYFESVHV 339

[Close]

BLAST of Spg015676 vs. ExPASy TrEMBL
Match: A0A5A7T7I6 (RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2967G00020 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.9e-16
Identity = 54/78 (69.23%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 1   PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAES 60
           PRGNR SLQT KL KT             PLLTLSVLRDNDAVVEIELLV DTLPMSAES
Sbjct: 344 PRGNRPSLQTGKLDKTV----------IFPLLTLSVLRDNDAVVEIELLVSDTLPMSAES 403

Query: 61  SRSSSSTWVELYIESVYI 79
             S+SSTW+ELY ESV++
Sbjct: 404 FESNSSTWLELYFESVHV 411

[Close]

BLAST of Spg015676 vs. ExPASy TrEMBL
Match: A0A5D3D5E2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00700 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.0e-14
Identity = 49/78 (62.82%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 1   PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAES 60
           PR NR SLQT +L KT             PL TLSVLRDNDA+VEIELLVPDTLP SAES
Sbjct: 376 PRENRPSLQTGELDKTV----------IFPLSTLSVLRDNDAIVEIELLVPDTLPTSAES 435

Query: 61  SRSSSSTWVELYIESVYI 79
           S S+S+TW+ELY ES+++
Sbjct: 436 SESNSNTWLELYFESIHV 443

[Close]

BLAST of Spg015676 vs. ExPASy TrEMBL
Match: A0A5A7URC7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G00290 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.0e-14
Identity = 49/78 (62.82%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 1   PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAES 60
           PR NR SLQT +L KT             PL TLSVLRDNDA+VEIELLVPDTLP SAES
Sbjct: 376 PRENRPSLQTGELDKTV----------IFPLSTLSVLRDNDAIVEIELLVPDTLPTSAES 435

Query: 61  SRSSSSTWVELYIESVYI 79
           S S+S+TW+ELY ES+++
Sbjct: 436 SESNSNTWLELYFESIHV 443

[Close]

BLAST of Spg015676 vs. ExPASy TrEMBL
Match: A0A5D3BRI2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002250 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.3e-14
Identity = 51/78 (65.38%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 1   PRGNRSSLQTRKLAKTPEAIWYRVLTGYIPLLTLSVLRDNDAVVEIELLVPDTLPMSAES 60
           PR NR SLQT +L KT             PL TLSVLRDNDAVVEIELLVP+TLP SAES
Sbjct: 76  PRENRPSLQTGELDKTV----------IFPLSTLSVLRDNDAVVEIELLVPNTLPTSAES 135

Query: 61  SRSSSSTWVELYIESVYI 79
           S S+SSTW+ELY ESV++
Sbjct: 136 SISNSSTWLELYFESVHV 143

The following BLAST results are available for this feature:

BLAST of Spg015676 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038923.1	3.8e-16	69.23	RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]	[more]
TYJ98714.1	3.8e-16	69.23	RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]	[more]
KAA0057197.1	2.1e-14	62.82	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK18765.1	2.1e-14	62.82	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK01618.1	4.7e-14	65.38	uncharacterized protein E5676_scaffold451G002250 [Cucumis melo var. makuwa]	[more]

BLAST of Spg015676 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg015676 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BI39	1.9e-16	69.23	RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7T7I6	1.9e-16	69.23	RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3D5E2	1.0e-14	62.82	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G0070...	[more]
A0A5A7URC7	1.0e-14	62.82	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G0029...	[more]
A0A5D3BRI2	2.3e-14	65.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Spg015676 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg015676.1	Spg015676.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0016779	nucleotidyltransferase activity