Spg015646 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg015646
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S13
Locationscaffold10: 19871137 .. 19881400 (+)
RNA-Seq ExpressionSpg015646
SyntenySpg015646
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGTAGGTCTCTTGTGTGGGTCTCGCTGTCCATTACTTGTCGTCGTCTACTACTCTGTGAGGTACTTGAAACGTCCTTCTCTCCAAGTCTGTTGCACAAATCTGTTTCGTCGATTAAAAAAATGGTCGTTTCGAATGGGATACTGAATTTCTTATGCCTTAATTATTTTGACACAGATGTAATTGTTGTGCTTCTTGAGATTCAAGATGAGAAGGGTTATTGATAAAGAGACTGCTGGTTTAATTTCTTGCTGAGTTGATTAAGTATTTCTTGACTGAGTACTAAGATCCCAATGGTAATATGAATTAAGTTTGTTTATTGGATCTCACTTGGAAGGACTAAATGACCTGCACAAAATGAAGCTAGCATGAGATGTCCTTGGATTTCTATTATAAAATGATCATACTTGATTGAAAATAATTCTTACTTAGGAAATGGGATCAGAAGAATTTATGGCTTAATAAATGTATAGAAAACCAAAATTTGAAGGATAAATGGCCAATACTATTTAGTGTAGTTATAAACCACATTGGCACAGTGGGCACCTATGGATCCAACTGATGTAGTTTGCACTCTTAGTTGAGCGACAAGATGATACGATGTTCAGAGGACCTTTGAGAAGGTGTGGTGCAAGGCAAGTTCTCGAGCAATTTCTTGTAATTTTTATTTCAGTTGCTTGGTTTGCTCCCTAGTTGGCCCTTCTTTGTAATTTCATTATTATCAATGAAAGCTGGTCTCTTACAAAATGAGAAAAATGCTTCACATTCAGTTATGGAGGAAAGGATTTCAAAAGTAAGAAAAGAGATTTCAAAAGAAGTTGAGTTCTTATATTAGGCATTTTTTTTGGGTGGTCTTAATAATTGAGAGAATTTAGAAAAGATGGAGAAAGATGTGTGTTAATTGTTGAGATTGAATTATTTGTGTTCTGTTTGCAAGGATGAGAATCCTAAGAACACCGTGTGCCCTCCCTTCTGTCCCTATAGACTATAGACTACTTTTTCAGTGGAATCTATTTAAATTATTTAACTTGTCTTGGGCATTTGATTCGAAAGTGCCAGGAAATTTGGACTAATGGCGGAAAGGAATTGCACTCACAGGAGGAGGAATAGTCATATGGTTGAATGTGGTGAAAGATTATTCTTTTCTTTTTTTCTGTTTTTGAGAAATTTGGTTAGAAAGGAGGAATAAGACTATAAGAGAGATTATTGGGAGGAAAAAGATGATACTGGATAAGACTTTTGAATTGGCAAAATAAAATGCTTCTAATAGTCTAAATAAACCATTTTCTAATTATACTCCTTTTGTAATTAATACAAGTTGAAGTAGGTTTTTATAGGACTGCGGATACTTATACATAAACCTGACTATTTCAATGTAGTTTTTATTCCAAAAGGGAGAGAGAAAAAGACTGTATAATGTATTGCTATGTAAAGGTAACAACAATGTCTTTTGTCTCATCTGATATGGAAAAGAAAATATGATGGAATAAGGATACTTTTTCAAATGGCATAATTGTCCAACTTATTCTCAATTTTCAAAGAAGATTAATTATCTTACCTCCCCTTCTTTAGGATGGATCATATCATGTACTCGACTATTGTTAGGTTTAAAATTTTAAAAAGTTATCAGTACCTGTTACAGTAATCATAAGGTATTGACTTAATAGTTGTAACATAACTTATAAATGTTGATTCCTTGTAAATTTATCATTGTGTGTTTTTTTCTTCTCGCTGAAAAAGAATTGATAGCGAGCAGAAATGTCGCTATTTTAGTCCCAATTTATCAGGCTTTTCTGTGCTTTAATCGTGTTTTTAATGAAAATATTTAATGAATTCCGTTATTTGGTCCTTAGGAGCAAAGTTGGTGATTTTGGGAGAAAAAGTGCAAAAAAATGAAGCAAATGAAGCCCAAATCCAAGCTTGATCAAATGGGGGCCCAAAAAAGACACTCATGAAAAAATGCCCAAAATAAATGAAGAAGAAGGCCCAAAAATCAGCCCAAAAAGAAGCTGAAAAATCTGGAATTTTAGGGCAGCGTCGAGACGCTATGTAAGCAGCGTCGCGACGCTACCCTTTTCGTGTTGCCCAAGCCGCGTGCGTTGCAGCGTCGCGACGCTGTGCAATGTAGCGTCGCGACGCTACCCCCAATCCGGGCCTATAAAAAGGCACCCTTGGGTGCCTCATTTACCATCAATCAATTCCTTCAATCCATTCTTTCCTTCCTTTGGCTCCTTTGGAGCCTCTCTCAAGGCTTTCTAGCCTTTTTGAGAGAATTCTTTAGTGGGAAATATTTGGGGAATTTTGGGGAGCATCTTAGGAAGCTCAAAGGAGTGTTTGGTGGAGCTCTGAGAGCCAAGCGAAGGGGTTTTTCGACGGTCAATTCCTTTCCTTTTATGCTCTTAAATTATGCTTTCTATTGTAAATGTTGTGGATATTTTAGCTATGTATAGCTAAACCCCAATTTGGGGTCTTGAAATGAAATTATAGTTGAAATGTTGTTATAATTACCTGTCTCTTGCCCTTTTTCCTAATTATTTGTATGGATGTGCTTAATGCTTTATTCAATCTGGCCAATTGTGTAATGATTCGATTCTTAATGGAGACTCGACGGAGAGAAGTTAGGATAGATCATAATCCATGCAACTAGTTTAATTGCCCGTCGTGACACCGGGATTAGTTGATTAAACTGAGATTCCTAAAATGAATCAGAGCGTAATAATTAATGATTTTTAATGGCGCTAAGGACACTTAGGTTGTTAAAATGAATTAATTACAATTAGGGGAAACCGACAGGAGAACCTATGTGATTAACGGAGATTCTAGGAGTATAATTAGTTGGGCAATGAGATAGGATAATTATAACAATTGATTAGCTCATAATTGATTTTCAAGACCCCTCTTCCCATTAAAAGAAATCTCTTTCTCCATATTTTTTTATTTGATTGATCAAATTATTTTCCTGCTTTGAATTTTAAATTTCTCTTATTTGCATGGGTTGTTCCCTAAATATTATTTTGCCTAAGTACTTTTAGTGCTCAAGAGATTTTTTGCTTAATTTTCGCTTCGCTTCCCTGTGGATTCGATACTCGGTATTACTACCGTTTTATATTACTTGCGGCCCGTGCACTTTGCGGTCATCAAGTTTTTGGCGCCGTTGCCGGGGAAGCTTGATTTTTAAGCAAATTAATTTTTCTTGACATCGAAAAGAAAGGGATAAATAGTAATTTAGGTGTAAATATTTTTCTTTTATTATTTTGTGAATATCATTTGTTTTTGTTTTATTTTGTTTGGTTCTCTTGATTGATTGGGAGTATTGTATGCGAAGGAACAAGGTGGTTAATTTGTTTCCGTTAGATCTTGAAATTGACAGGACTCTTAGATTCATTCGAAGAGAGAAAAGATTAGCAGAAGCAATGGCCCACCAAGAGGAAGCTCCCAAGGCAATTAGAGATTTCTTACAGCCAGTTCTCCCCACCGAGAATTCTGGGATTGTCTACGCCCCAATCCAAGCTACAAATTTTGAGTTAAAGACGGGATTGATTCAGATGGCGCGCGATAACTCGTTTAAGGGACACCCTTCTGAGGACCCACACTCACATCTGCGATCATTCCTGGAAATTTGTGGGACGGTGCAGATGAATGGAGTTCCGGCCGACGCTATCAGATTGAGGTTATTTCCATTCTCTCTACAGGATAAAGCAAAGGATTGGCTCGAATCAGTCGAGACGGGCAGCATAAGTACATGGGATGAGCTTGCCCAGGCTTTTCTGACAAAATTTTTCCCGCCTGCCAAGACTACCAAGCTCCGGACTGAAATCAGAACATTTAGGCAGCTTGACGAGGAGCAGTTGTACGAGGCGTGGGAAAGATACAAAGAAATGCTTAGGCGGTGCCCCCAACACGGATATCCTGATTGGCTTCAAGTACAGTTATTTTATAATGGATTGAATCCCTCCACGAAGACAGTCCTAGACACATCAGCAGGAGGAAGTTTTCTTTCAAAACAGTGACAGAAGCCAAAGATCTGCTTGAGGAAATGGCGGCAACCAGTTATCAATGGCCAACCGAGAGGGGAGCAATTTCAAAGAAGGCTGGATTATATGAATTGGATGAGTCAAGTTCACTGAAGGCACAGCTGGCATCTCTGACCAATGCGCTGAACAAGTTGACTTCGTCTGAGGTGGTCAAGTCCATTTCCACCTTAGCTGAAGGTCATTCAAAGAAGGAAGGTCAAGATGTGGAAGAAGTCCAGTACGTAGGAAATAGACCATTTACGCAAGGAATACCGAACTTCTACCACCCCAGTCTACGCAATCATGAGAACTTCTCATACTCAAATACAAAGAATGTCTTGCAGCCACCGCCAGGTTTTGCATCATCTAGTGTGCCTGAAAAGAAGAATAACCTGGAGGAGTTGGTGGCTATGTTTGTAAAGGAACATAAAGTTTTGAACGTCAATCTCCAGACAGCAGTCAATAACCACGACACAGCTCTGAAAAACATGGAAGTTCAAATAGGACAGATCGCTTCAGCAGTGAATGCACTTCAAAAGGGAAAATTTCCAAGCGACACTGAGCCTAACCCAAGAGAGCAGTGCAAGATGGTGACACTGAGAAGTGGTAGACAGCTGGAGAACAGTTCAGAAAAGAAGAAGGAAGAAGAAAAGAGAAGGGATGAAGATGAAAGGGCTGAGGCACAAAAAGCCTCCTCTGAAAGGTCCCAACATCCTCCTGACTCTATTGACTTAAATTGTGATTTTTCTAACAATTTTGCAGGTAGAAAAGAAGATAAAAAGCAGGATGGCAGGCACAACAAGAAACTGTACGAGGAAGAAGTGGTCCCATGCAACCACCATGACAAAGGCTCGCACATCAGCCCGCCCAGGCGAAGGGGCGAATGTCCAACCTTTGACTACAGGGAGTTACCTTTTCCTCAGCGCTTTAAGAATGTTAAATTAGATGAGCAGTTTCAAAAATTTCTAGAAATGTTTAAGAAATTGTCTGTGAATATTCCCTTAGTAGATGCCTTGTATAACATGCCTAATTATGGGAAATTCATGAAAGAAATGCTTTCTAGAAAGAAAAGTCTGAAAAAAGAAATTTTTAAATTGTCTGAGAGTAGCAGTACCATAGTATCTGGGAAGATGCCTTCTAAACAAAAAGATCCAGGGAGTTTTACTGTTCCCTGCACCATAGGAGAAGCATCTTTCTATAGGGCCTTATGTGATTTAGGAGCAAGTATAAACTTGATGCCCTATTCTGTTTACAGGAGGATTGGTTTAACAGGTATGAAGGACACCGACGTCACTCTCCAGCTTGCTGACAGATCAATTACCCAACCAATGGGTGTTGTGGAGGACGTATTGGTGAAGGTCAACAAGTTTATCTTCCCCGTAGATTTTGTGGTACTAGACATGAAGGAGGACAAGGAGGTGCCCATTATTCTAGGCAGACCTTTCCTAGCTACAGGTAAAGCTGAGATCAGTGTCCACACAGGTAAGCTTACCTTGAACATTGATGATGAAAAAGTTGTGTTTAGTATTTTTGGACAAGATGAGTCTGTATGTAGTTTGCATACATGTTTTTCTATTGGTCCTGAATACTTGACTGACGATGATGAGGAGGTAGAGTTTAATCTTGGCTTAGGCTTAGGAGAAGTGCCTATGGATGATGAGGATTTTGATCACAATGCATATTTGAATAATCCTCTGTTTGAGAATGATTTAGAACTGCCTGACTTTGAAAATGAATTAGACTTGCCTGCTTGTGACAATGAAAGATCTGCAGTTGATGATTTACCTTCCTTTGAGAATGAATTAGATTTGCCTGAAATGGATAATTTTGATGATGATATAGAGTTGCCTGACATTGAGGATGAGCATGAAATGCATAAAAAAGATTACTTGGTAGATAATTTTGAGTCTGATCGTGATTATACTGAATCTATTGAGTCTGATCTTGACATTCCTGAATGCATGAACCCTAATAATGTTAACACCTTTGATTCGTGTCCTGATGATGTATATAGCATAGAAACTGACCCAGAGGAACTCGAATCTGTGCATAGTATAGAATCTGACCCTGAAGAGCTTGAATTCTTTAATTCTGATAGTGAGTCATGTGATAGCCTAGTCGAATCATTTTTTAATACTGAGTCTGAGGAATCTGAGGAGCATGTAAATGTTTTTTCTGATGAATGGTCTGGCATGATTGATAGGCCATCTTTAGATCCTAGACCGGTAGATATTATAACGCTTGATGACTCTGTTAACAATTGCTTTGTGAATAGAGACTTAGAAAAGAGATTTGATGCTGTTACATATTTTCTGCAATGTTATTATGATAATCTCTTTAGTGATGATGGGCCAGGGGAAAGTTTTTTTTCTCCCCTGTTTGCGGTATGCAACTCGGTGCGTGATTTTTTACAAGGCCCAGAGGATGATGAAAATTTTTATTTCGAGCCTCCGTAAGCGTGCCGAGCCTCGTCTAGCTAAAGACGTTAAAGAAAGCGCTGCTTGGGAGGCAACCCAAGGATTAAAGTTTAGATAGTTGTTTTTGCGGTAAATAATTTTCTTTGCTTCGTGATCCAATTTTGTTTTGCAGGATCACCTTAAGCAATCCCAAAATTCCAAGAATCCCATTTTTCTGGATCGAAAGGAAGAGGATAAAGCGCTCCTAGCTCAGGGAAGTCTCAGTATCCCTCTATTTGCTTTACTGTTTTAAAAACATTGGGGACAATGTTTAATTTAAGTTTGGGGGGGAGGCTTCCGCTGTGTTGAGCATATTTGAATTCTTTCGGATGCATGAATAGATAGCCATGATAGCCAGGGATGTGATTTTAGAAATTTTGGGAGAAGATAGTTTATATGTTGTGGAATCTGGGAGCACGGCAGAAATTGTGAAATTTTAAAATTTTTTGATACTTAGTTTTGATGTCTAAAGCATGCAATAGCCTTATCTAATGACGTCTTTGAAAATCTAGATTCTTATTATGATTTTTAAAGTTTGTTGTCACCCCGATAGGCTTAGTTTCTAATATTAGGAAGTTCATGCTTGATTGTTCTAAAGAGCTAGGTAGGAAAAAAAAAAAAAATGTTATGCCTGCTGAGAGAAAAGCAAAAGCAACAAAAGAAAATGAGAGAAAAGAAAAATCTGTTGAAAAAGAAAATTTTTTGCTTGCACAAAAGAAAAAGCCTAGGGGTAAAAAGAGCTACCTGCGGTGTGATCAGTTAGGCCAACCAGAGAATAAAATTCGGGTTAAGGGTCCCTGCACCGTAGTGTGAAAGCTAGTACCATTAGATATCAAAATGCAAGTTTGGGGGAGTAGCAAAAGAAAAAGCAAAAGAAAGAGAAAAATCAATTGTGAGTTTTGCTCCCCCATGAAAAAGAAAATATCAGGCACCCTAGTTTCTTTTTTTTTTTGCATGATAGAAGGACTCCGACCTATTAGGGGCTCTTAGCCAGTGTAGGGGGAAAACAAATGGAGAAAGCCATAAGACTAATCTAGGTTAGTAAAAGAATCAATAGATAAGTCTTGAGCATGCTATTCATTAATCTTAAGTTCAATCTAGTTTAAGATTTCTTCAAGAGTATGCGGTGCTTGCTTATTCCACTTGCATGTTTTCCATTCTATCTTAAGAATTCCAAAATCATTGAGGCTTGAGCGATTCTATTTCATGCATCTTTAGAATTTATTTTGCTCGGGACTAGCAAAAGCTTAAGTTTGGGGGTGTGATAGCGAGCAGAAATGTCGCTATTTTAGTCCCAATTTATCAGGCTTTTCTGTGCTTTAATCGTGTTTTTAATGAAAATATTTAATGAATTCCGTTATTTGGTCCTTAGGAGCAAAGTTGGTGATTTTGGGAGAAAAAGTGCAAAAAAATGAAGCAAATGAAGCCCAAATCCAAGCTTGATCAAATGGGGGCCCAAAAAAGACACTCATGAAAAAATGCCCAAAAGAAATGAAGAAGAAGGCCCAAAAATCAGCCCAAAAAGAAGCTGAAAAATCTGGAATTTTAGGGCAGCGTCGAGACGCTATGTAAGCAGCGTCGCGACGCTACCCTTTTCGTGTTGCCCAAGCCGCGTGCGTTGCAGCGTCGCGACGCTGTGCAATGTAGCGTCGCGACGCTACCCCCAATCCGGGCCTATAAAAAGGCACCCTTGGGTGCCTCATTTACCATCAATCAATTCATTCTTTCCTTCCTTTGGCTCCTTTGGAGCCTCTCTCAAGGCTTTCTAGCCTTTTTGAGAGAATTCTTTAGTGGGAAATATTTGGGGAATTTTGGGGAGCATCTTAGGAAGCTCAAAGGAGTGTTCGGCGGAGCTCTGAGCGCCAAGCGAAGGGGTTTTTCGACGGTCAATTCCTTTCCTTTTATGCTCTTAAATTATGCTTTCTATTGTAAATGTTGTGGATATTTTAGCTATGTATAGCTAAACCCCAATTTGGGGTCTTGAAATGAAATTATAGTTGAAATGTTGTTATAATTACCTGTCTCTTGCCGTTTTTCCTAATTATTTGTATGGATGTGCTTAATGCTTTATTCAATCTGGCCAATTGTGTAATGATTCGATTCTTAATGGAGACTCGACGGAGAGAAGTTAGGATAGATCATAATCCATGCAACTAGTTTAATTGCCCGTCGTGACACCGGGATTAGTTGATTAAACTGAGATTCCTAAAATGAATCAGAGCGTAATAATTAATGATTTTTAATGGCGCTAAGGACACTTAGGTTGTTAAAATGAATTAATTACAATTAGGGGAAACCGACAGGAGAACCTATGTGATTAACGGAGATTCTAGGAGTATAATTAGTTGGGCAATGAGATAGGATAATTATAACAATTGATTAGCTCATAATTGATTTTCAAGACCCCTCTTCCCATTAAAAGAAATCTCTTTCTCCATATTTTTTTATTTGATTGATCAAATTATTTTCCTGCTTTGAATTTTAAATTTCTCTTATTTGCATGGGTTGTTCCCTAAATATTATTTTGCCTAAGTACTTTTAGTGCTCAAGAGATTTTTTGCTTAATTTTCGCTTCGCTTCCCTGTGGATTCGATACTCGGTATTACTACCGTTTTATATTACTTGCGGCCCGTGCACTTTGCGGTCATCAAGAATCCCAAATTTTTTCTGGGAGTTAGCATTGTGCCCACCCCCCACACGTCCCCCCATGTGGTAACGATGCAATGTCAATCTTTCAATGATCAAGGCATTACTCTGTTAACTCCAACAACAGTAGATCTATATTTTCATATTCTTTTCAACTTATTGGCGTTATATAGTATCCTGGCCACTTACTAGTTACTCAAATGAACACTCCTTGCAATGAACCTCTTGATTTTATATTTTATACTAACATTCATACACTTTTCTGCAGAGATGCAACCATTATACGAAGAGTTTTAGAAGGATTAATGCAAAACAAACATTGTTGCGCAATGTCAGTGCTTATGCAGAATTCCTCTTTCAGGTTTGCATTAGTTGCTTTGTTAACTTATGCATTGAAATCAGCTTTCAGTATACCTTGCTCATAGCAGATAGGGTCCCATTGAAAATTACCAGGAAGAAAAAGAGGTTCTTGTAAAAGATTGCTCATGTGATTGGCTGGCGATGAAAATTGCAGTCGTTGATTTTAGTGAAGCATGGTGACATGTTTTTGAGTGTCATCTGAGTGTCAATTCTGATGGTTATACTTGTCGAATGTCTAAGAAAACCGCAAGTTCTTTCATTGCTTGTCATTTTAACTGCTTAGAAAGGGAAGTGAATCTCTGTACGATCTATAGAAATTGATGGCTTTCCTTTGACAATTCAGGTTGCTGAGTACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTGAAATTGGTGTTATTCTTCGTGATTCTCACGTGATTGCTCAGGTGAAAAGTGTAACTGAGAGCAAGATCTTGCGTATATTGAAGGCTCATGGTGAGCCCCATCTACCCTTCCTCCATTGTACTTCTATTCTATACATTAGTCAAAATTATTATGTTATTCTTTTTAACATGTTTTCTTTTTTGGCTTAGGGCTAGCTCCTAAAATCTCGGGGGATCTTTACCATCTCATCAAGAAGGTTGTTTCAATCAGAAAGCATTTGGAGAGAAACAAGAAAGACAAGGATTCCCAAGTTCAAGTTGATTTTGGTGGAGAGCAGGATCCATCGTCTGGCCCGGTATTACAAGAAGACAGAAGCTTCCCCCTATTTGGAAGTAGTAAGTATTTTAAGGCATAG

mRNA sequence

ATGGCAGTAGGTCTCTTGTGTGGGTCTCGCTGTCCATTACTTGTCGTCGTCTACTACTCTGTGAGCGTCGAGACGCTATGTAAGCAGCGTCGCGACGCTACCCTTTTCGTGTTGCCCAAGCCGCGTGCGTTGCAGCGTCGCGACGCTGTGCAATGTAGCGTCGCGACGCTACCCCCAATCCGGGCCTATAAAAAGGCACCCTTGGGTGCCTCATTTACCATCAATCAATTCCTTCAATCCATTCTTTCCTTCCTTTGGCTCCTTTGGAGCCTCTCTCAAGGCTTTCTAGCCTTTTTGAGAGAATTCTTTAGTGGGAAATATTTGGGGAATTTTGGGGAGCATCTTAGGAAGCTCAAAGGAGTGTTTGGTGGAGCTCTGAGAGCCAAGCGAAGGGAGTTGCCTGACATTGAGGATGAGCATGAAATGCATAAAAAAGATTACTTGGTAGATAATTTTGAGTCTGATCGTGATTATACTGAATCTATTGAGTCTGATCTTGACATTCCTGAATGCATGAACCCTAATAATGTTAACACCTTTGATTCGTGTCCTGATGATGTATATAGCATAGAAACTGACCCAGAGGAACTCGAATCTGTGCATAGTATAGAATCTGACCCTGAAGAGCTTGAATTCTTTAATTCTGATAGTGAGTCATGTGATAGCCTAGTCGAATCATTTTTTAATACTGAGTCTGAGGAATCTGAGGAGCATGTAAATGTTTTTTCTGATGAATGGTCTGGCATGATTGATAGGCCATCTTTAGATCCTAGACCGGTAGATATTATAACGCTTGATGACTCTGTTAACAATTGCTTTGTGAATAGAGACTTAGAAAAGAGATTTGATGCTGTTACATATTTTCTGCAATGTTATTATGATAATCTCTTTAGTGATGATGGGCCAGGGGAAAGTTTTTTTTCTCCCCTGTTTGCGGGCAGCGTCGAGACGCTATGTAAGCAGCGTCGCGACGCTACCCTTTTCGTGTTGCCCAAGCCGCGTGCGTTGCAGCGTCGCGACGCTGTGCAATGTAGCGTCGCGACGCTACCCCCAATCCGGGCCTATAAAAAGGCACCCTTGGGTGCCTCATTTACCATCAATCAATTCATTCTTTCCTTCCTTTGGCTCCTTTGGAGCCTCTCTCAAGGCTTTCTAGCCTTTTTGAGAGAATTCTTTAGTGGGAAATATTTGGGGAATTTTGGGGAGCATCTTAGGAAGCTCAAAGGAGTGTTCGGCGGAGCTCTGAGCGCCAAGCGAAGGGAAATTGATGGCTTTCCTTTGACAATTCAGGTTGCTGAGTACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTGAAATTGGTGTTATTCTTCGTGATTCTCACGTGATTGCTCAGGTGAAAAGTGTAACTGAGAGCAAGATCTTGCGTATATTGAAGGCTCATGGGCTAGCTCCTAAAATCTCGGGGGATCTTTACCATCTCATCAAGAAGGTTGTTTCAATCAGAAAGCATTTGGAGAGAAACAAGAAAGACAAGGATTCCCAAGTTCAAGTTGATTTTGGTGGAGAGCAGGATCCATCGTCTGGCCCGGTATTACAAGAAGACAGAAGCTTCCCCCTATTTGGAAGTAGTAAGTATTTTAAGGCATAG

Coding sequence (CDS)

ATGGCAGTAGGTCTCTTGTGTGGGTCTCGCTGTCCATTACTTGTCGTCGTCTACTACTCTGTGAGCGTCGAGACGCTATGTAAGCAGCGTCGCGACGCTACCCTTTTCGTGTTGCCCAAGCCGCGTGCGTTGCAGCGTCGCGACGCTGTGCAATGTAGCGTCGCGACGCTACCCCCAATCCGGGCCTATAAAAAGGCACCCTTGGGTGCCTCATTTACCATCAATCAATTCCTTCAATCCATTCTTTCCTTCCTTTGGCTCCTTTGGAGCCTCTCTCAAGGCTTTCTAGCCTTTTTGAGAGAATTCTTTAGTGGGAAATATTTGGGGAATTTTGGGGAGCATCTTAGGAAGCTCAAAGGAGTGTTTGGTGGAGCTCTGAGAGCCAAGCGAAGGGAGTTGCCTGACATTGAGGATGAGCATGAAATGCATAAAAAAGATTACTTGGTAGATAATTTTGAGTCTGATCGTGATTATACTGAATCTATTGAGTCTGATCTTGACATTCCTGAATGCATGAACCCTAATAATGTTAACACCTTTGATTCGTGTCCTGATGATGTATATAGCATAGAAACTGACCCAGAGGAACTCGAATCTGTGCATAGTATAGAATCTGACCCTGAAGAGCTTGAATTCTTTAATTCTGATAGTGAGTCATGTGATAGCCTAGTCGAATCATTTTTTAATACTGAGTCTGAGGAATCTGAGGAGCATGTAAATGTTTTTTCTGATGAATGGTCTGGCATGATTGATAGGCCATCTTTAGATCCTAGACCGGTAGATATTATAACGCTTGATGACTCTGTTAACAATTGCTTTGTGAATAGAGACTTAGAAAAGAGATTTGATGCTGTTACATATTTTCTGCAATGTTATTATGATAATCTCTTTAGTGATGATGGGCCAGGGGAAAGTTTTTTTTCTCCCCTGTTTGCGGGCAGCGTCGAGACGCTATGTAAGCAGCGTCGCGACGCTACCCTTTTCGTGTTGCCCAAGCCGCGTGCGTTGCAGCGTCGCGACGCTGTGCAATGTAGCGTCGCGACGCTACCCCCAATCCGGGCCTATAAAAAGGCACCCTTGGGTGCCTCATTTACCATCAATCAATTCATTCTTTCCTTCCTTTGGCTCCTTTGGAGCCTCTCTCAAGGCTTTCTAGCCTTTTTGAGAGAATTCTTTAGTGGGAAATATTTGGGGAATTTTGGGGAGCATCTTAGGAAGCTCAAAGGAGTGTTCGGCGGAGCTCTGAGCGCCAAGCGAAGGGAAATTGATGGCTTTCCTTTGACAATTCAGGTTGCTGAGTACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTGAAATTGGTGTTATTCTTCGTGATTCTCACGTGATTGCTCAGGTGAAAAGTGTAACTGAGAGCAAGATCTTGCGTATATTGAAGGCTCATGGGCTAGCTCCTAAAATCTCGGGGGATCTTTACCATCTCATCAAGAAGGTTGTTTCAATCAGAAAGCATTTGGAGAGAAACAAGAAAGACAAGGATTCCCAAGTTCAAGTTGATTTTGGTGGAGAGCAGGATCCATCGTCTGGCCCGGTATTACAAGAAGACAGAAGCTTCCCCCTATTTGGAAGTAGTAAGTATTTTAAGGCATAG

Protein sequence

MAVGLLCGSRCPLLVVVYYSVSVETLCKQRRDATLFVLPKPRALQRRDAVQCSVATLPPIRAYKKAPLGASFTINQFLQSILSFLWLLWSLSQGFLAFLREFFSGKYLGNFGEHLRKLKGVFGGALRAKRRELPDIEDEHEMHKKDYLVDNFESDRDYTESIESDLDIPECMNPNNVNTFDSCPDDVYSIETDPEELESVHSIESDPEELEFFNSDSESCDSLVESFFNTESEESEEHVNVFSDEWSGMIDRPSLDPRPVDIITLDDSVNNCFVNRDLEKRFDAVTYFLQCYYDNLFSDDGPGESFFSPLFAGSVETLCKQRRDATLFVLPKPRALQRRDAVQCSVATLPPIRAYKKAPLGASFTINQFILSFLWLLWSLSQGFLAFLREFFSGKYLGNFGEHLRKLKGVFGGALSAKRREIDGFPLTIQVAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKDKDSQVQVDFGGEQDPSSGPVLQEDRSFPLFGSSKYFKA
Homology
[Close]
BLAST of Spg015646 vs. NCBI nr
Match: XP_038906798.1 (40S ribosomal protein S13 [Benincasa hispida])

HSP 1 Score: 142.9 bits (359), Expect = 8.2e-30
Identity = 77/107 (71.96%), Postives = 86/107 (80.37%), Query Frame = 0 

Query: 408 KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTE 467
           KG+   AL  KR       ++ Q VAE ICKFAKKGLTPS+IGVILRDSH IAQVKSVT 
Sbjct: 9   KGISASALPYKRTPPSWLKISAQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 68

Query: 468 SKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKDKDSQVQV 514
           SKILRILKAHGLAP+I  DLYHLIKK VSIRKHLERN+KDKDS+ ++
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRL 115

[Close]
BLAST of Spg015646 vs. NCBI nr
Match: XP_022143980.1 (40S ribosomal protein S13-like [Momordica charantia] >XP_022959507.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_022964010.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_023000449.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023006177.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023514341.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >XP_023547500.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >KAG6574796.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013377.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6593712.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026051.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.5 bits (358), Expect = 1.1e-29
Identity = 77/107 (71.96%), Postives = 86/107 (80.37%), Query Frame = 0 

Query: 408 KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTE 467
           KG+   AL  KR       ++ Q VAE ICKFAKKGLTPS+IGVILRDSH IAQVKSVT 
Sbjct: 9   KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 68

Query: 468 SKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKDKDSQVQV 514
           SKILRILKAHGLAP+I  DLYHLIKK VSIRKHLERN+KDKDS+ ++
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRL 115

[Close]
BLAST of Spg015646 vs. NCBI nr
Match: CAB4278608.1 (unnamed protein product [Prunus armeniaca] >CAB4309019.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 142.5 bits (358), Expect = 1.1e-29
Identity = 77/108 (71.30%), Postives = 86/108 (79.63%), Query Frame = 0 

Query: 407 LKGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVT 466
           LKG+   AL  KR       ++ Q V E ICKFAKKGLTPS+IGVILRDSH IAQVKSVT
Sbjct: 19  LKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVT 78

Query: 467 ESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKDKDSQVQV 514
            SKILRILKAHGLAP+I  DLYHLIKK VSIRKHLERN+KDKDS+ ++
Sbjct: 79  GSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRL 126

[Close]
BLAST of Spg015646 vs. NCBI nr
Match: KAA0039994.1 (40S ribosomal protein S13 [Cucumis melo var. makuwa] >TYK24507.1 40S ribosomal protein S13 [Cucumis melo var. makuwa])

HSP 1 Score: 141.4 bits (355), Expect = 2.4e-29
Identity = 76/107 (71.03%), Postives = 86/107 (80.37%), Query Frame = 0 

Query: 408 KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTE 467
           KG+   AL  KR       ++ Q VAE ICKFAKKGLTPS+IGVILRDSH IAQVKSVT 
Sbjct: 9   KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 68

Query: 468 SKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKDKDSQVQV 514
           +KILRILKAHGLAP+I  DLYHLIKK VSIRKHLERN+KDKDS+ ++
Sbjct: 69  NKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRL 115

[Close]
BLAST of Spg015646 vs. NCBI nr
Match: GAU48204.1 (hypothetical protein TSUD_185410 [Trifolium subterraneum])

HSP 1 Score: 141.4 bits (355), Expect = 2.4e-29
Identity = 76/109 (69.72%), Postives = 86/109 (78.90%), Query Frame = 0 

Query: 406 KLKGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSV 465
           K KG+   AL  KR       +T Q V + ICKFAKKGLTPS+IGVILRDSH IAQVKS+
Sbjct: 7   KGKGISSSALKYKRSPASWQKITTQDVEDTICKFAKKGLTPSQIGVILRDSHGIAQVKSI 66

Query: 466 TESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKDKDSQVQV 514
           T SKILRILKAHGLAP+I  DLYHLIKK VSIRKHLERN+KDKDS+ ++
Sbjct: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRL 115

[Close]
BLAST of Spg015646 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.0e-31
Identity = 75/107 (70.09%), Postives = 84/107 (78.50%), Query Frame = 0 

Query: 408 KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTE 467
           KG+   AL  KR       ++ Q V E ICKFAKKGLTPS+IGVILRDSH IAQV SVT 
Sbjct: 9   KGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVNSVTG 68

Query: 468 SKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKDKDSQVQV 514
           SKILRILKAHGLAP+I  DLYHLIKK VSIRKHLERN+KDKDS+ ++
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRL 115

[Close]
BLAST of Spg015646 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.4e-31
Identity = 75/107 (70.09%), Postives = 83/107 (77.57%), Query Frame = 0 

Query: 408 KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTE 467
           KG+   AL  KR        T Q V E ICKFAKKGLTPS+IGVILRDSH I QVKSVT 
Sbjct: 9   KGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTG 68

Query: 468 SKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKDKDSQVQV 514
           SKILRILKAHGLAP+I  DLYHLIKK V+IRKHLERN+KDKDS+ ++
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRL 115

[Close]
BLAST of Spg015646 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 4.5e-31
Identity = 75/107 (70.09%), Postives = 83/107 (77.57%), Query Frame = 0 

Query: 408 KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTE 467
           KG+   AL  KR        T Q V E ICKFAKKGLTPS+IGVILRDSH I QVKSVT 
Sbjct: 9   KGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTG 68

Query: 468 SKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKDKDSQVQV 514
           SKILRILKAHGLAP+I  DLYHLIKK V+IRKHLERN+KDKDS+ ++
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRL 115

[Close]
BLAST of Spg015646 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.3e-30
Identity = 75/109 (68.81%), Postives = 85/109 (77.98%), Query Frame = 0 

Query: 406 KLKGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSV 465
           K KG+   AL  +R       ++ Q V E ICKFAKKGLTPS+IGVILRDSH IAQVKSV
Sbjct: 7   KGKGISSSALPYRRTAPSWLKISSQDVDETICKFAKKGLTPSQIGVILRDSHGIAQVKSV 66

Query: 466 TESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKDKDSQVQV 514
           T SKILRILKAHGLAP+I  DLYHLIKK VSIRKHLER +KDKDS+ ++
Sbjct: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRL 115

[Close]
BLAST of Spg015646 vs. ExPASy Swiss-Prot
Match: P62299 (40S ribosomal protein S13 OS=Brugia pahangi OX=6280 GN=RPS13 PE=2 SV=2)

HSP 1 Score: 118.2 bits (295), Expect = 2.8e-25
Identity = 63/107 (58.88%), Postives = 80/107 (74.77%), Query Frame = 0 

Query: 408 KGVFGGALSAKRREIDGFPLTI-QVAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTE 467
           KG+   AL  +R       LT  +V E + + AKKGL PS+IGVILRDSH +AQV+ VT 
Sbjct: 9   KGISQSALPYRRSVPTWLKLTSEEVQEQVTRLAKKGLRPSQIGVILRDSHGVAQVRRVTG 68

Query: 468 SKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKDKDSQVQV 514
           +KI+RILKA G+AP+I  DLYHLIKK V+IRKHLERN+KDKDS+ ++
Sbjct: 69  NKIVRILKAKGMAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKYRL 115

[Close]
BLAST of Spg015646 vs. ExPASy TrEMBL
Match: A0A1D1YPC1 (40S ribosomal protein S13 (Fragment) OS=Anthurium amnicola OX=1678845 GN=RPS13_7 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.9e-30
Identity = 77/116 (66.38%), Postives = 89/116 (76.72%), Query Frame = 0 

Query: 399 NFGEHLRKLKGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHV 458
           N G    + KG+ G AL  KR       ++ Q V + ICKFAKKGLTPS+IGVILRDSH 
Sbjct: 39  NMGRMHSRGKGISGSALPYKRTPASWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHG 98

Query: 459 IAQVKSVTESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKDKDSQVQV 514
           IAQVKSVT SKILRILKAHGLAP+I  DLYHLIKK V+IRKHLERN+KDKDS+ ++
Sbjct: 99  IAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRL 154

[Close]
BLAST of Spg015646 vs. ExPASy TrEMBL
Match: A0A6J1KV63 (40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111498990 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.2e-30
Identity = 77/107 (71.96%), Postives = 86/107 (80.37%), Query Frame = 0 

Query: 408 KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTE 467
           KG+   AL  KR       ++ Q VAE ICKFAKKGLTPS+IGVILRDSH IAQVKSVT 
Sbjct: 9   KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 68

Query: 468 SKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKDKDSQVQV 514
           SKILRILKAHGLAP+I  DLYHLIKK VSIRKHLERN+KDKDS+ ++
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRL 115

[Close]
BLAST of Spg015646 vs. ExPASy TrEMBL
Match: A0A6J5UXQ5 (Ribosomal_S13_N domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS30042 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.2e-30
Identity = 77/108 (71.30%), Postives = 86/108 (79.63%), Query Frame = 0 

Query: 407 LKGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVT 466
           LKG+   AL  KR       ++ Q V E ICKFAKKGLTPS+IGVILRDSH IAQVKSVT
Sbjct: 19  LKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVT 78

Query: 467 ESKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKDKDSQVQV 514
            SKILRILKAHGLAP+I  DLYHLIKK VSIRKHLERN+KDKDS+ ++
Sbjct: 79  GSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRL 126

[Close]
BLAST of Spg015646 vs. ExPASy TrEMBL
Match: A0A6J1HJL3 (40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111464161 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.2e-30
Identity = 77/107 (71.96%), Postives = 86/107 (80.37%), Query Frame = 0 

Query: 408 KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTE 467
           KG+   AL  KR       ++ Q VAE ICKFAKKGLTPS+IGVILRDSH IAQVKSVT 
Sbjct: 9   KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 68

Query: 468 SKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKDKDSQVQV 514
           SKILRILKAHGLAP+I  DLYHLIKK VSIRKHLERN+KDKDS+ ++
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRL 115

[Close]
BLAST of Spg015646 vs. ExPASy TrEMBL
Match: A0A6J1CQC4 (40S ribosomal protein S13-like OS=Momordica charantia OX=3673 GN=LOC111013762 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.2e-30
Identity = 77/107 (71.96%), Postives = 86/107 (80.37%), Query Frame = 0 

Query: 408 KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTE 467
           KG+   AL  KR       ++ Q VAE ICKFAKKGLTPS+IGVILRDSH IAQVKSVT 
Sbjct: 9   KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG 68

Query: 468 SKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKDKDSQVQV 514
           SKILRILKAHGLAP+I  DLYHLIKK VSIRKHLERN+KDKDS+ ++
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRL 115

[Close]
BLAST of Spg015646 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 137.9 bits (346), Expect = 2.4e-32
Identity = 75/107 (70.09%), Postives = 83/107 (77.57%), Query Frame = 0 

Query: 408 KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTE 467
           KG+   AL  KR        T Q V E ICKFAKKGLTPS+IGVILRDSH I QVKSVT 
Sbjct: 9   KGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTG 68

Query: 468 SKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKDKDSQVQV 514
           SKILRILKAHGLAP+I  DLYHLIKK V+IRKHLERN+KDKDS+ ++
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRL 115

[Close]
BLAST of Spg015646 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 137.5 bits (345), Expect = 3.2e-32
Identity = 75/107 (70.09%), Postives = 83/107 (77.57%), Query Frame = 0 

Query: 408 KGVFGGALSAKRREIDGFPLTIQ-VAEYICKFAKKGLTPSEIGVILRDSHVIAQVKSVTE 467
           KG+   AL  KR        T Q V E ICKFAKKGLTPS+IGVILRDSH I QVKSVT 
Sbjct: 9   KGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTG 68

Query: 468 SKILRILKAHGLAPKISGDLYHLIKKVVSIRKHLERNKKDKDSQVQV 514
           SKILRILKAHGLAP+I  DLYHLIKK V+IRKHLERN+KDKDS+ ++
Sbjct: 69  SKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRL 115

The following BLAST results are available for this feature:
BLAST of Spg015646 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038906798.18.2e-3071.9640S ribosomal protein S13 [Benincasa hispida][more]
XP_022143980.11.1e-2971.9640S ribosomal protein S13-like [Momordica charantia] >XP_022959507.1 40S ribosom... [more]
CAB4278608.11.1e-2971.30unnamed protein product [Prunus armeniaca] >CAB4309019.1 unnamed protein product... [more]
KAA0039994.12.4e-2971.0340S ribosomal protein S13 [Cucumis melo var. makuwa] >TYK24507.1 40S ribosomal p... [more]
GAU48204.12.4e-2969.72hypothetical protein TSUD_185410 [Trifolium subterraneum][more]
BLAST of Spg015646 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P623022.0e-3170.0940S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1[more]
P592243.4e-3170.0940S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1[more]
P592234.5e-3170.0940S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1[more]
P462981.3e-3068.8140S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1[more]
P622992.8e-2558.8840S ribosomal protein S13 OS=Brugia pahangi OX=6280 GN=RPS13 PE=2 SV=2[more]
BLAST of Spg015646 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1D1YPC13.9e-3066.3840S ribosomal protein S13 (Fragment) OS=Anthurium amnicola OX=1678845 GN=RPS13_7... [more]
A0A6J1KV635.2e-3071.9640S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111498990 PE=3 ... [more]
A0A6J5UXQ55.2e-3071.30Ribosomal_S13_N domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP... [more]
A0A6J1HJL35.2e-3071.9640S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111464161 PE=... [more]
A0A6J1CQC45.2e-3071.9640S ribosomal protein S13-like OS=Momordica charantia OX=3673 GN=LOC111013762 PE... [more]
BLAST of Spg015646 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G00100.12.4e-3270.09ribosomal protein S13A [more]
AT3G60770.13.2e-3270.09Ribosomal protein S13/S15 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012606Ribosomal protein S13/S15, N-terminalSMARTSM01386Ribosomal_S13_N_2coord: 405..458
e-value: 7.7E-4
score: 20.5
IPR012606Ribosomal protein S13/S15, N-terminalPFAMPF08069Ribosomal_S13_Ncoord: 430..458
e-value: 8.2E-9
score: 35.4
NoneNo IPR availableGENE3D4.10.860.130coord: 433..480
e-value: 1.5E-24
score: 87.4
NoneNo IPR availableGENE3D1.10.287.10coord: 481..515
e-value: 3.9E-11
score: 45.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 505..531
NoneNo IPR availablePANTHERPTHR11885:SF2540S RIBOSOMAL PROTEIN S13-1-RELATEDcoord: 407..513
IPR023029Ribosomal protein S15PPANTHERPTHR11885RIBOSOMAL PROTEIN S15P/S13Ecoord: 407..513
IPR009068S15/NS1, RNA-bindingSUPERFAMILY47060S15/NS1 RNA-binding domaincoord: 464..511

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg015646.1Spg015646.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005730 nucleolus
cellular_component GO:0005840 ribosome
molecular_function GO:0070181 small ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome