Spg015607 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg015607
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold10: 11987495 .. 11990684 (+)
RNA-Seq Expression	Spg015607
Synteny	Spg015607

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAAACGAGAGCAAGAAAAGAGAGAGACAATGAGGAAGAGGAGGTACCTGTTACCCCCGAAGCACCGAAAGCTAAGGCAAGGAAAAAGAAAACACCAGAAGAGAAAGAAGCTAAGAGGAGAAGAAGACAGCAAATGGCTGAGGATCAAGTAATAGTGCAGAAGGTAGTTGAGGATGTTGCTGTCGAGGTAGTGGAAGAAGGCAATCCGAAGGAACCAGAAGTACAAAATCCAGAGCAAACTGACTCGATAGTTGCGGATACGGAGGAGATTCAAGAAGAGCACAGAGAGGAAGTTCAAGAAAAACAGACCGAGGATACACAAGAGAAACGGACGAAAGATGTGCAGGAAAAAGGTAATGCGTAGATGGAACAAGAGCAGGAGGCGCGAGTGGAGGTTATCATGCCGGAAGTGCCAAGACGTCGCCGTCGGAAGCAAAAAGTCGGTCGTGTTAAGGTAGTCCGAACTGATACTCCCTTGCCGCCAACCACTGATTTTGAGAGAAAATGCAGAGGAACAGGAGAAAAAAAAGGCCAAAGCCAAAGCAAGAGAATAAGCACAGAAAAAGGATGAGGAAGAAAGTTTGCTCAAACAAAGGGAAGACAAGGGCAAGGGCATTGCTGAAGCATCGGTAGAACCAGAGAATAGCGATACAGAGGAACCAGGGCATTGCTGAAGCATCGGTAGAACCAGAGAATAGCGATACAGAGGAACCAAGGTTGTCGTATCATCGCTTCGTCAACAATCTTGCCAGAGCAAAGTATGCTGAGCTGCTAAAAAGAGACTTCCTGTTTGAAAGAGGATTTAGTAGTGATCTTCCACATTTTCTGAGGGCCGGCATTACGAACCACGGCTGGGAGTTGTTTTGTTCCAAGCCTGAATCTGTGAACGCGCATGTAGTGCGTGAGTTTTATGCAAATATTGACGAGGAAGAAGGTTTCCAAGTTATTGTTTGAGGTGTAGAAGTCGACTGGAGTCCTGGTGCCATTAACGCCCTATATAACCTTCAAGATTTCCCCCACGCAGGATACAATGAGATGGTTGTGGTGCCATCTAATGAGCAATTAAGCAATGCTTTCCGGGAAGTTGGTGTTGAACGGGTGCAGTGGAGGCTTTCGAAAACAGAGAAAAGGACATTTTAGTCAGCCTATCTTAAGAAGGAAGCAAATACATGGATGGGATTCATCAAACAGAGGTTGCTTCCAACGACTCATGACTCGACGATTTCTAGGGAACGTGTTCTTCTGCCTTTCGCGATTTTAAGGTCTCTCAGTATTGATGTGTGCAAGATTATTGTGAGTGAGATATCTGGATGCTGGCGGAAGAAGGTTGGGAAGTTGTTTTTCCCGAATACAATTACAATGCTTTGCAAGAAAGCAGGGGTTCCGGAGAATGAAGGAGATGTCATATTATTTGACAAGGGAATTATCGATCCGCCTAACTTGGCACGGCTTCAGCGTACGCCAGAGGCACGTTAGGGTGGGCTTGTCTATGGCATTCACAAGATTGTAGAACAACTTGCACTGTCGGCCAGCAGGCAAGAGTTTGCTGAGAGGCAATCTCTAACTTTCTGGAGCTATGTTAAACGTCGTGATGCCAACCTAAAGAAGGCGCTAGAGGAAAATTTTTCCAAACCATACCCAGCCCTTCCGATGTCCCCTGACGATTTGTTGAACCCCTGGATTCTGCCGCCACCTGCTGAAAGAGAAGAAGAGGATGATGAAGAGCAGGGTCAGGAAGATTGACGGATGCAATGATTTTGAACGAGCATTATTTTTGTTTTTCTATTTTTGATTGCTCGCATATATCTGACCCCGCTTTCTGTTGATGTTATGTTTGCTTGTTTTTTAATTTTTATGTCCCTAGGCTATCAAAATATCTGCTTTTGTAATCTGTTCGCTTTATTTTTAATGAAATTTCCGGAGTTATTTCTGTCCTATGGCACTGAGCAATTCTAACTTAACTAATTTTCTTCTGAATTTTTGAAGCTTGGATTGGTTAAGCTTAATTAGATCAAGGTATTCTGATCTCCAGAAACCTTTTGCTTGAGCATTTCTTCTAGCCTGGTCATTGCTGAGAAGATTCTGAGGTAATGTTGATTTATTTGATCCACTTTAAGCTTAGTTCTAGTCCCACACTTAGTTTGAAAATTTAGATAGAAAAATTTAAGTTTGGGGGTAAAATTCATGAATTTAATGATTCATTGGGGACAATGAATAATTCAAGTTTGGGGGACTTTTTGCTACTCCAATTGTTTTGCTCGAGCATTCCTCTCCTTCATTAGATAATTTGCTAGGTTGTTGAGTAACCAGGGACATTTGTGATACCCACAGTTTGTCTTTGCGTCAAAAGATAACCTAGGTAATATGAAAAATGAAAAAATTATTTGTTGAAAAAAGTTGATTGTTGAAAATTTTGCTGAGAAAATTCATGGAGCAAAAGTTTTGAAGGATGAATGGCAATCTAGCAGTTTTCTGTCTCCCAGAACTTAGGTGAGCTTCATCATAAAATGTTGCCATTCTGAGGGGCAAGAGATCGAATAACTAAGGATTTTTTAGCTTTACAAAGAGTAATTAGCCTAGTTGATGATGAGTTTGAGGCAAGAGTATACTACACCATAAAGTGGGTCATCCCATGCTTAAGAGCTTATGACTGTAGGGCTGCTTTATGTCTGAAAAAAAAAATATAAACCCCTTAAAAATGTGTTTTAATATATCTGATATTAAAGCTAGGCTGTGGCAAGTTCTTAGAATTGAGTTAAAAGTGGTGATTATTTGTCCATGCCGGAAGAACTATTTTGCTCCAGCAGTCCTTGGTTTTGCAGAATGCTCAGGTAAAGGTTGAAGGTAGTGTTGGATTATCTGTTTTGATTAAGTTATGCTTTGTCTGATGTTTTGAATTCTTAAGAGAAGGTTGGTTAGTATTGCTCGGATGAGCAATAGTTCAAGTTTGGGGATATGATAACTCTCCAAAAGGGAGTTATTTAGGCCTTATTTCTATATTGATTTGTGTGTCTTTTGTGCTAAATAGGGTTGCTTTTAGATAGATATTATATGTTTTAACCCATTTGGAAGAATGGATGCTTTGGAAGTTATTTCGTGCAGAATATAATGCTGAGCGACTTGAGGGAGCAAAATCTGTGCTGGAGCAAAGCTGGGAGCAAAACTGCCACGTCACAGTTCGTTAG

mRNA sequence

ATGGTGAAAACGAGAGCAAGAAAAGAGAGAGACAATGAGGAAGAGGAGGTACCTGTTACCCCCGAAGCACCGAAAGCTAAGGCAAGGAAAAAGAAAACACCAGAAGAGAAAGAAGCTAAGAGGAGAAGAAGACAGCAAATGGCTGAGGATCAAGTAATAGTGCAGAAGGTAGTTGAGGATGTTGCTGTCGAGGTAGTGGAAGAAGGCAATCCGAAGGAACCAGAAGTACAAAATCCAGAGCAAACTGACTCGATAGTTGCGGATACGGAGGAGATTCAAGAAGAGCACAGAGAGGAAGTTCAAGAAAAACAGACCGAGGATACACAAGAGAAACGGACGAAAGATGTGCAGGAAAAAGGTAATGCAATAGCGATACAGAGGAACCAGGGCATTGCTGAAGCATCGGTAGAACCAGAGAATAGCGATACAGAGGAACCAAGGTTGTCGTATCATCGCTTCGTCAACAATCTTGCCAGAGCAAAGTATGCTGAGCTGCTAAAAAGAGACTTCCTGTTTGAAAGAGGATTTAGTAGTGATCTTCCACATTTTCTGAGGGCCGGCATTACGAACCACGGCTGGGAGTTGTTTTGTTCCAAGCCTGAATCTGTGAACGCGCATGTAGTGCAAGTCGACTGGAGTCCTGGTGCCATTAACGCCCTATATAACCTTCAAGATTTCCCCCACGCAGGATACAATGAGATGGTTGTGGTGCCATCTAATGAGCAATTAAGCAATGCTTTCCGGGAAGTTGGTGTTGAACGGGTGCAGTGGAGGCTTTCGAAAACAGAGAAAAGGACATTTTAG

Coding sequence (CDS)

ATGGTGAAAACGAGAGCAAGAAAAGAGAGAGACAATGAGGAAGAGGAGGTACCTGTTACCCCCGAAGCACCGAAAGCTAAGGCAAGGAAAAAGAAAACACCAGAAGAGAAAGAAGCTAAGAGGAGAAGAAGACAGCAAATGGCTGAGGATCAAGTAATAGTGCAGAAGGTAGTTGAGGATGTTGCTGTCGAGGTAGTGGAAGAAGGCAATCCGAAGGAACCAGAAGTACAAAATCCAGAGCAAACTGACTCGATAGTTGCGGATACGGAGGAGATTCAAGAAGAGCACAGAGAGGAAGTTCAAGAAAAACAGACCGAGGATACACAAGAGAAACGGACGAAAGATGTGCAGGAAAAAGGTAATGCAATAGCGATACAGAGGAACCAGGGCATTGCTGAAGCATCGGTAGAACCAGAGAATAGCGATACAGAGGAACCAAGGTTGTCGTATCATCGCTTCGTCAACAATCTTGCCAGAGCAAAGTATGCTGAGCTGCTAAAAAGAGACTTCCTGTTTGAAAGAGGATTTAGTAGTGATCTTCCACATTTTCTGAGGGCCGGCATTACGAACCACGGCTGGGAGTTGTTTTGTTCCAAGCCTGAATCTGTGAACGCGCATGTAGTGCAAGTCGACTGGAGTCCTGGTGCCATTAACGCCCTATATAACCTTCAAGATTTCCCCCACGCAGGATACAATGAGATGGTTGTGGTGCCATCTAATGAGCAATTAAGCAATGCTTTCCGGGAAGTTGGTGTTGAACGGGTGCAGTGGAGGCTTTCGAAAACAGAGAAAAGGACATTTTAG

Protein sequence

MVKTRARKERDNEEEEVPVTPEAPKAKARKKKTPEEKEAKRRRRQQMAEDQVIVQKVVEDVAVEVVEEGNPKEPEVQNPEQTDSIVADTEEIQEEHREEVQEKQTEDTQEKRTKDVQEKGNAIAIQRNQGIAEASVEPENSDTEEPRLSYHRFVNNLARAKYAELLKRDFLFERGFSSDLPHFLRAGITNHGWELFCSKPESVNAHVVQVDWSPGAINALYNLQDFPHAGYNEMVVVPSNEQLSNAFREVGVERVQWRLSKTEKRTF

Homology

[Close]

BLAST of Spg015607 vs. NCBI nr
Match: EXB77427.1 (hypothetical protein L484_000483 [Morus notabilis])

HSP 1 Score: 57.4 bits (137), Expect = 2.2e-04
Identity = 43/171 (25.15%), Postives = 73/171 (42.69%), Query Frame = 0


Query: 114 KDVQEKGNAIAIQRNQGIAEASVEPENSDTEE--PRLSYHRFVNNLARAKYAELLKRDFL 173
           K    KG  + I  +   +E+    EN++ ++     + HRF  +    K A  ++R F+
Sbjct: 4   KSKARKGKGVRILIDSDSSESDPATENAEVKKFASPEAEHRF--DTCMNKRALHMERGFV 63

Query: 174 FERGFSSDLPHFLRAGITNHGWELFCSKPESVNAHVVQ---------------VDWSPGA 233
           + RG  S  P F+ + I  H W  FC  P +    +V+               + ++  A
Sbjct: 64  YRRGRPSGYPSFIHSVIAAHKWHSFCHNPHAATVQLVREYAAEPDTIFVRGQLIPFTSEA 123

Query: 234 INALYNLQDFPHAGYNEMVVVPSNEQLSNAFREVGVERVQWRLSKTEKRTF 268
           IN+LY+L D     +N      + +QL     E+ VE  +WR +     TF
Sbjct: 124 INSLYDLPDV-EDHFNNFADSLNEDQLDEVINELCVEGTEWRRATRGSMTF 171

The following BLAST results are available for this feature:

BLAST of Spg015607 vs. NCBI nr


Match Name	E-value	Identity	Description
EXB77427.1	2.2e-04	25.15	hypothetical protein L484_000483 [Morus notabilis]	[more]

BLAST of Spg015607 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg015607 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg015607 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 86..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg015607.1	Spg015607.1	mRNA