Spg015596 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg015596
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Locationscaffold10: 10395112 .. 10399167 (-)
RNA-Seq ExpressionSpg015596
SyntenySpg015596
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTATAATTCACACGAACGGCTTTTGGACAACCACTTGGATCTTCTCTACTATCCTCAGGCATTCGAACGGATTGTGGGATCCTCAATTGATAGGAATTGGAAAGGAAAGCTTATGGGTATAAGCAAGCTTGAGAGTATGAACATGGAAGTTCTTGGGAGAATTTTGGCAGCATTTTAGGTTAAAAAATCCACCAATTTTCATCAGCTCATCCTCTATATATAGAGGAAAATCATGCACAAGAATTGCACAAAAAATTGACAACAAATCGGGATCATTTTGAGTCACAAGATTAGGTGGTGCAATAAGGCTAATTACAAGTGATTAGTCATTAAGCACCACCTCCAAAATTTGCTAACTTTTGAATTTCTTTTAAATTCAAAATTTGCAAATAAAATTCTGAATAATCCCATTTTCTTTTATTTTTATTTTTATTTAAATATCATTTATTTAATTAAATAAATTATTTAATTTAATATCTCATATTAAATTAATACCATTTGTGCAATCTTGGTTTCTTTTTCCCAACGAATTTTCTCGAACATGAATCCCTATTCACGTGTTTAATATTTAAATCATATTTAAATATATAACTCTCATTTTAAGTTTAATTCATAATTAAACTAATATGTCGTTAAATATCGTATATAAGCGACTTTTGTATCCTTTTCCGAATTTTGAACGTTTCAAATATTAACCTATCATATTGTTCCAAGTTTTAGTCCTATTGAGCTAGTACAGGGACCTAATGGACCTACAGATCATGGGCTCCAACGAAATGATGATAACCGATTAATCTCATTAACCTAGTCATTCATCGTTCGTTAGCTTCCGGGACACTCCACTATAGCCCGTAGCTGCACTCCCCTCACTGTAGATATATTTCTTGTCCACTTTAGATAACCATGATTAGTAAGTCGACCCTTCACCGGTTGTTCGTAACTAGAGATAGGTCAAATGTCCGTTTTACCCCTATAGTTACATCTTGTTCCTTAAGTTCCACTGATCCTCTAATGAACAACTAGTTCGCGATACAATCACTAAAACAAGTCCCTCTCAAGGTTATGAGAGGGCGGGGCCCCTTTGTTCAAGACTCGGAGTCAGTACTTAAGGGAACAACCTCTTTACTAACCCTAACATGGGTAGCAGTGAAGTCTGTCTTGCAAAGCTATGTGCCCAGCTATCCATTTAGTCTGATCCCCAAACTGGTAGGCTTATTGAGTCGGCGATGTTTGGCCACTCTCACCCATGCAAATCAAAGGATAATCCTAAATAAACAGGAGTTCATAGTTAGCTCAGGATTAAGATCGAGTTACCTAAGTTATATGTGTGAGATGTTCAGTTTCAACAGTAAACGGTGTTGTAAAGTGAAAGTGACTTATCTCCTGGTCCGATCTCTATGCAAACTCTTTGCATAGGACACCCTCACTCACATGTCTTATACATGATTGATTAGGATCACATCGTCTGTCTTTAAAGAACAAAGCGAGTCGTGCCAATAGTGTCCCCAGGATTAAGGTACCCAACCTTATCCATATACTATAGACCGTTTAGACTATTTACTTGAACTTGATCCATACTTATGTCACACATAAACTTCAAGTATACATAATATAGCCATGGGTTCTTATTTTATTGGATTTGTGGTTATATTTAGGCAAAACAAATATATAGAAATAATACTTCATTAAAGCAAGTCAAATGTTACATTTTACCATCTACGAGTTTTAGGGCATAAAACCCAACAAACTCCCACTTGCACTAAAACTCTAGTTAGTGGAAATGCATACACATTTAATAATACCAAAGCAAGGAAATGTTACAAATACAATAAACTAGGGCACTCTTATACCCTGTACATCTCCCACTTGCCCTAGGTTATGCTATATACATATCTCGTAGACCTAACTTCTGTAGATGACCCTCAAACACTTTAGCTGAGAGAGTCTTTGTAAATGGATCAGCAATGTTGTGTTCTGAAGCGATCTTCGTGACTATCACTGTAAACCCGAGACTTCTCTAGGATCATTTTCTCTTGTCATCTCTTGTTGGGATTACTAAGTTAAAAGAAGAAAGGAAAGAAAAGAAAAGGAAAAGGAAAAGGAAAATGGAAGGAAAAGGAAAAAAAAAAGAGAGAAAAGAAATCAGCAAAGAAAAAAAAAAAAGAGAAAAGAAAGGAAGTGGAAATGGACGGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTGAGGTTTGATTTTCTTGAAAGTTAGTTCATTTGCTAACAAATTTCATGAAGGAAGCTTGACCTAAATCGTATGAGAAGTGGATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCAATTTGGTATGGTTGGAAATCTTATTCAATTATCTACAACTTTTATGAATAATTCGTGAGCCAAAAATGACTTTAAGTAGGTTTAATTTCAGGAGGAAGATAAAAGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGACTTCGGGGCATTTCTGGACAAATTGGTTGGGAATATCGTTTTCATTTCTTCAGGTAAGTTGTAGAGTGTTCGAACATGAAGAGTGTGATGTGTATTTCATTAATTTTGGTTCAGTATTGAGAAAGTTATGGGTATTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAAAGTAGAATTGTGAATGTGATTCTTAATCCAATTGTTTAAAAATTCATGAGCATGGAAAGACAAAGCTATCTATGGTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTGAGTGACAAAATGAATTTCGAAAATGTTCTTAAACGGTTGTTCATGATTATATGTTTTACATGCGTTCCTATGAATGATACATGGTATTTATGAACGGTTTCAAGCATGAGTTTTGAGCTCAGATTTTCTAATGAGGTTTATATACGAGCACGTGTCTAATGACTTTATGAAAAATAGCTGAAACGATATCTTTTAAAGTAAAGTATGGATTAGCAAGTACTTCTAAATGATTTTCGGTTTTCCACGAGCAAGCTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTACTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGATTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTGCTAGATTTTTAATGACGAACTTGCGAAATATTTTAGAAAGCCTTTATCCTTACACGTTTATGTTAAACGCCTTGACTGAGCATATTTATACGTTTAGAGGTTTATCACGTGTTTTGACTTCCAGATTTAGAGTTTTAAAATTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGCAAGGGTTGTATAATATCGTCCTAGAGGTCGTGGATGTATAA

mRNA sequence

ATGCTTTATAATTCACACGAACGGCTTTTGGACAACCACTTGGATCTTCTCTACTATCCTCAGGCATTCGAACGGATTGTGGGATCCTCAATTGATAGGAATTGGAAAGGAAAGCTTATGGGTATAAGCAAGCTTGAGAGATCACATCGTCTGTCTTTAAAGAACAAAGCGAGTCGTGCCAATAGTGTCCCCAGGATTAAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGCAAGGGTTGTATAATATCGTCCTAGAGGTCGTGGATGTATAA

Coding sequence (CDS)

ATGCTTTATAATTCACACGAACGGCTTTTGGACAACCACTTGGATCTTCTCTACTATCCTCAGGCATTCGAACGGATTGTGGGATCCTCAATTGATAGGAATTGGAAAGGAAAGCTTATGGGTATAAGCAAGCTTGAGAGATCACATCGTCTGTCTTTAAAGAACAAAGCGAGTCGTGCCAATAGTGTCCCCAGGATTAAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGCAAGGGTTGTATAATATCGTCCTAGAGGTCGTGGATGTATAA

Protein sequence

MLYNSHERLLDNHLDLLYYPQAFERIVGSSIDRNWKGKLMGISKLERSHRLSLKNKASRANSVPRIKEKVHAKPAIAESGCKLSTSGFLFGLSYTEGIKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIVNVLQGLYNIVLEVVDV
Homology
[Close]
BLAST of Spg015596 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 114.8 bits (286), Expect = 7.3e-22
Identity = 64/108 (59.26%), Postives = 72/108 (66.67%), Query Frame = 0 

Query: 66  IKEKVHAKPAIAESGCKLSTSGFLFGLSYTEGIK----------------------RPRG 125
           I EKV+AKPAIAESGC       LFGLSY E ++                       PRG
Sbjct: 22  IIEKVNAKPAIAESGCNCQPLIVLFGLSYLEELRGESTRFLSKSGGFLVFSDALSILPRG 81

Query: 126 NRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI 152
           NR +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTWLELY ESVH+
Sbjct: 82  NRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHV 129

[Close]
BLAST of Spg015596 vs. NCBI nr
Match: KAA0040420.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 9.9e-19
Identity = 51/63 (80.95%), Postives = 55/63 (87.30%), Query Frame = 0 

Query: 89  LFGLSYTEGIKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES 148
           LF LSY EG KRPRGNR SLQTG+LDKTVEIELP+PDTLPT AES  S+SSTWLELY ES
Sbjct: 19  LFSLSYPEGTKRPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSSTWLELYFES 78

Query: 149 VHI 152
           VH+
Sbjct: 79  VHV 81

[Close]
BLAST of Spg015596 vs. NCBI nr
Match: KAA0025357.1 (hypothetical protein E6C27_scaffold1204G00410 [Cucumis melo var. makuwa] >TYK23443.1 hypothetical protein E5676_scaffold605G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-17
Identity = 53/80 (66.25%), Postives = 58/80 (72.50%), Query Frame = 0 

Query: 89  LFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSA 148
           LFGLSY EG KRP+GNR SLQTGELDKT                 VEIELPVPDTLPTSA
Sbjct: 19  LFGLSYPEGTKRPKGNRLSLQTGELDKTVIFLLSTLSVLRDNDVVVEIELPVPDTLPTSA 78

Query: 149 ESSRSSSSTWLELYIESVHI 152
           ES RS+S+TWLELY ES+H+
Sbjct: 79  ESFRSNSNTWLELYFESIHV 98

[Close]
BLAST of Spg015596 vs. NCBI nr
Match: KAA0051980.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 2.1e-16
Identity = 53/80 (66.25%), Postives = 56/80 (70.00%), Query Frame = 0 

Query: 89  LFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSA 148
           LFGL Y EG KRPRGNR+SLQTGELDKT                 VEIELPVPDTLPTSA
Sbjct: 19  LFGLGYPEGTKRPRGNRTSLQTGELDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSA 78

Query: 149 ESSRSSSSTWLELYIESVHI 152
           ESS S+SSTWLEL  E VH+
Sbjct: 79  ESSGSNSSTWLELNFEFVHV 98

[Close]
BLAST of Spg015596 vs. NCBI nr
Match: KAA0062263.1 (hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 3.9e-15
Identity = 43/60 (71.67%), Postives = 53/60 (88.33%), Query Frame = 0 

Query: 92  LSYTEGIKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI 151
           +S  E ++ PRGNR SLQ G+L+KTVEIELP+PDTLPTS+ESS+S+SSTWLELY ESVH+
Sbjct: 82  ISNLENLEMPRGNRPSLQIGKLEKTVEIELPMPDTLPTSSESSKSNSSTWLELYFESVHV 141

[Close]
BLAST of Spg015596 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 3.6e-22
Identity = 64/108 (59.26%), Postives = 72/108 (66.67%), Query Frame = 0 

Query: 66  IKEKVHAKPAIAESGCKLSTSGFLFGLSYTEGIK----------------------RPRG 125
           I EKV+AKPAIAESGC       LFGLSY E ++                       PRG
Sbjct: 22  IIEKVNAKPAIAESGCNCQPLIVLFGLSYLEELRGESTRFLSKSGGFLVFSDALSILPRG 81

Query: 126 NRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI 152
           NR +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTWLELY ESVH+
Sbjct: 82  NRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHV 129

[Close]
BLAST of Spg015596 vs. ExPASy TrEMBL
Match: A0A5A7TAS6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00450 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 4.8e-19
Identity = 51/63 (80.95%), Postives = 55/63 (87.30%), Query Frame = 0 

Query: 89  LFGLSYTEGIKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES 148
           LF LSY EG KRPRGNR SLQTG+LDKTVEIELP+PDTLPT AES  S+SSTWLELY ES
Sbjct: 19  LFSLSYPEGTKRPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSSTWLELYFES 78

Query: 149 VHI 152
           VH+
Sbjct: 79  VHV 81

[Close]
BLAST of Spg015596 vs. ExPASy TrEMBL
Match: A0A5D3DIM8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00460 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 6.9e-18
Identity = 53/80 (66.25%), Postives = 58/80 (72.50%), Query Frame = 0 

Query: 89  LFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSA 148
           LFGLSY EG KRP+GNR SLQTGELDKT                 VEIELPVPDTLPTSA
Sbjct: 19  LFGLSYPEGTKRPKGNRLSLQTGELDKTVIFLLSTLSVLRDNDVVVEIELPVPDTLPTSA 78

Query: 149 ESSRSSSSTWLELYIESVHI 152
           ES RS+S+TWLELY ES+H+
Sbjct: 79  ESFRSNSNTWLELYFESIHV 98

[Close]
BLAST of Spg015596 vs. ExPASy TrEMBL
Match: A0A5A7U9X4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002130 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.0e-16
Identity = 53/80 (66.25%), Postives = 56/80 (70.00%), Query Frame = 0 

Query: 89  LFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSA 148
           LFGL Y EG KRPRGNR+SLQTGELDKT                 VEIELPVPDTLPTSA
Sbjct: 19  LFGLGYPEGTKRPRGNRTSLQTGELDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSA 78

Query: 149 ESSRSSSSTWLELYIESVHI 152
           ESS S+SSTWLEL  E VH+
Sbjct: 79  ESSGSNSSTWLELNFEFVHV 98

[Close]
BLAST of Spg015596 vs. ExPASy TrEMBL
Match: A0A5A7V2F2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00320 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.9e-15
Identity = 43/60 (71.67%), Postives = 53/60 (88.33%), Query Frame = 0 

Query: 92  LSYTEGIKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI 151
           +S  E ++ PRGNR SLQ G+L+KTVEIELP+PDTLPTS+ESS+S+SSTWLELY ESVH+
Sbjct: 82  ISNLENLEMPRGNRPSLQIGKLEKTVEIELPMPDTLPTSSESSKSNSSTWLELYFESVHV 141

The following BLAST results are available for this feature:
BLAST of Spg015596 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0052218.17.3e-2259.26uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0040420.19.9e-1980.95NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0025357.11.4e-1766.25hypothetical protein E6C27_scaffold1204G00410 [Cucumis melo var. makuwa] >TYK234... [more]
KAA0051980.12.1e-1666.25DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 D... [more]
KAA0062263.13.9e-1571.67hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa][more]
BLAST of Spg015596 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg015596 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UAH63.6e-2259.26CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7TAS64.8e-1980.95NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3DIM86.9e-1866.25Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U9X41.0e-1666.25DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7V2F21.9e-1571.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Spg015596 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 165..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg015596.1Spg015596.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process
molecular_function GO:0016740 transferase activity