Spg015596 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg015596
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	CCHC-type domain-containing protein
Location	scaffold10: 10395112 .. 10399167 (-)
RNA-Seq Expression	Spg015596
Synteny	Spg015596

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTATAATTCACACGAACGGCTTTTGGACAACCACTTGGATCTTCTCTACTATCCTCAGGCATTCGAACGGATTGTGGGATCCTCAATTGATAGGAATTGGAAAGGAAAGCTTATGGGTATAAGCAAGCTTGAGAGTATGAACATGGAAGTTCTTGGGAGAATTTTGGCAGCATTTTAGGTTAAAAAATCCACCAATTTTCATCAGCTCATCCTCTATATATAGAGGAAAATCATGCACAAGAATTGCACAAAAAATTGACAACAAATCGGGATCATTTTGAGTCACAAGATTAGGTGGTGCAATAAGGCTAATTACAAGTGATTAGTCATTAAGCACCACCTCCAAAATTTGCTAACTTTTGAATTTCTTTTAAATTCAAAATTTGCAAATAAAATTCTGAATAATCCCATTTTCTTTTATTTTTATTTTTATTTAAATATCATTTATTTAATTAAATAAATTATTTAATTTAATATCTCATATTAAATTAATACCATTTGTGCAATCTTGGTTTCTTTTTCCCAACGAATTTTCTCGAACATGAATCCCTATTCACGTGTTTAATATTTAAATCATATTTAAATATATAACTCTCATTTTAAGTTTAATTCATAATTAAACTAATATGTCGTTAAATATCGTATATAAGCGACTTTTGTATCCTTTTCCGAATTTTGAACGTTTCAAATATTAACCTATCATATTGTTCCAAGTTTTAGTCCTATTGAGCTAGTACAGGGACCTAATGGACCTACAGATCATGGGCTCCAACGAAATGATGATAACCGATTAATCTCATTAACCTAGTCATTCATCGTTCGTTAGCTTCCGGGACACTCCACTATAGCCCGTAGCTGCACTCCCCTCACTGTAGATATATTTCTTGTCCACTTTAGATAACCATGATTAGTAAGTCGACCCTTCACCGGTTGTTCGTAACTAGAGATAGGTCAAATGTCCGTTTTACCCCTATAGTTACATCTTGTTCCTTAAGTTCCACTGATCCTCTAATGAACAACTAGTTCGCGATACAATCACTAAAACAAGTCCCTCTCAAGGTTATGAGAGGGCGGGGCCCCTTTGTTCAAGACTCGGAGTCAGTACTTAAGGGAACAACCTCTTTACTAACCCTAACATGGGTAGCAGTGAAGTCTGTCTTGCAAAGCTATGTGCCCAGCTATCCATTTAGTCTGATCCCCAAACTGGTAGGCTTATTGAGTCGGCGATGTTTGGCCACTCTCACCCATGCAAATCAAAGGATAATCCTAAATAAACAGGAGTTCATAGTTAGCTCAGGATTAAGATCGAGTTACCTAAGTTATATGTGTGAGATGTTCAGTTTCAACAGTAAACGGTGTTGTAAAGTGAAAGTGACTTATCTCCTGGTCCGATCTCTATGCAAACTCTTTGCATAGGACACCCTCACTCACATGTCTTATACATGATTGATTAGGATCACATCGTCTGTCTTTAAAGAACAAAGCGAGTCGTGCCAATAGTGTCCCCAGGATTAAGGTACCCAACCTTATCCATATACTATAGACCGTTTAGACTATTTACTTGAACTTGATCCATACTTATGTCACACATAAACTTCAAGTATACATAATATAGCCATGGGTTCTTATTTTATTGGATTTGTGGTTATATTTAGGCAAAACAAATATATAGAAATAATACTTCATTAAAGCAAGTCAAATGTTACATTTTACCATCTACGAGTTTTAGGGCATAAAACCCAACAAACTCCCACTTGCACTAAAACTCTAGTTAGTGGAAATGCATACACATTTAATAATACCAAAGCAAGGAAATGTTACAAATACAATAAACTAGGGCACTCTTATACCCTGTACATCTCCCACTTGCCCTAGGTTATGCTATATACATATCTCGTAGACCTAACTTCTGTAGATGACCCTCAAACACTTTAGCTGAGAGAGTCTTTGTAAATGGATCAGCAATGTTGTGTTCTGAAGCGATCTTCGTGACTATCACTGTAAACCCGAGACTTCTCTAGGATCATTTTCTCTTGTCATCTCTTGTTGGGATTACTAAGTTAAAAGAAGAAAGGAAAGAAAAGAAAAGGAAAAGGAAAAGGAAAATGGAAGGAAAAGGAAAAAAAAAAGAGAGAAAAGAAATCAGCAAAGAAAAAAAAAAAAGAGAAAAGAAAGGAAGTGGAAATGGACGGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTGAGGTTTGATTTTCTTGAAAGTTAGTTCATTTGCTAACAAATTTCATGAAGGAAGCTTGACCTAAATCGTATGAGAAGTGGATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCAATTTGGTATGGTTGGAAATCTTATTCAATTATCTACAACTTTTATGAATAATTCGTGAGCCAAAAATGACTTTAAGTAGGTTTAATTTCAGGAGGAAGATAAAAGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGACTTCGGGGCATTTCTGGACAAATTGGTTGGGAATATCGTTTTCATTTCTTCAGGTAAGTTGTAGAGTGTTCGAACATGAAGAGTGTGATGTGTATTTCATTAATTTTGGTTCAGTATTGAGAAAGTTATGGGTATTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAAAGTAGAATTGTGAATGTGATTCTTAATCCAATTGTTTAAAAATTCATGAGCATGGAAAGACAAAGCTATCTATGGTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTGAGTGACAAAATGAATTTCGAAAATGTTCTTAAACGGTTGTTCATGATTATATGTTTTACATGCGTTCCTATGAATGATACATGGTATTTATGAACGGTTTCAAGCATGAGTTTTGAGCTCAGATTTTCTAATGAGGTTTATATACGAGCACGTGTCTAATGACTTTATGAAAAATAGCTGAAACGATATCTTTTAAAGTAAAGTATGGATTAGCAAGTACTTCTAAATGATTTTCGGTTTTCCACGAGCAAGCTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTACTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGATTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTGCTAGATTTTTAATGACGAACTTGCGAAATATTTTAGAAAGCCTTTATCCTTACACGTTTATGTTAAACGCCTTGACTGAGCATATTTATACGTTTAGAGGTTTATCACGTGTTTTGACTTCCAGATTTAGAGTTTTAAAATTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGCAAGGGTTGTATAATATCGTCCTAGAGGTCGTGGATGTATAA

mRNA sequence

ATGCTTTATAATTCACACGAACGGCTTTTGGACAACCACTTGGATCTTCTCTACTATCCTCAGGCATTCGAACGGATTGTGGGATCCTCAATTGATAGGAATTGGAAAGGAAAGCTTATGGGTATAAGCAAGCTTGAGAGATCACATCGTCTGTCTTTAAAGAACAAAGCGAGTCGTGCCAATAGTGTCCCCAGGATTAAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGCAAGGGTTGTATAATATCGTCCTAGAGGTCGTGGATGTATAA

Coding sequence (CDS)

ATGCTTTATAATTCACACGAACGGCTTTTGGACAACCACTTGGATCTTCTCTACTATCCTCAGGCATTCGAACGGATTGTGGGATCCTCAATTGATAGGAATTGGAAAGGAAAGCTTATGGGTATAAGCAAGCTTGAGAGATCACATCGTCTGTCTTTAAAGAACAAAGCGAGTCGTGCCAATAGTGTCCCCAGGATTAAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGCAAGGGTTGTATAATATCGTCCTAGAGGTCGTGGATGTATAA

Protein sequence

MLYNSHERLLDNHLDLLYYPQAFERIVGSSIDRNWKGKLMGISKLERSHRLSLKNKASRANSVPRIKEKVHAKPAIAESGCKLSTSGFLFGLSYTEGIKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIVNVLQGLYNIVLEVVDV

Homology

[Close]

BLAST of Spg015596 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 114.8 bits (286), Expect = 7.3e-22
Identity = 64/108 (59.26%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 66  IKEKVHAKPAIAESGCKLSTSGFLFGLSYTEGIK----------------------RPRG 125
           I EKV+AKPAIAESGC       LFGLSY E ++                       PRG
Sbjct: 22  IIEKVNAKPAIAESGCNCQPLIVLFGLSYLEELRGESTRFLSKSGGFLVFSDALSILPRG 81

Query: 126 NRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI 152
           NR +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTWLELY ESVH+
Sbjct: 82  NRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHV 129

[Close]

BLAST of Spg015596 vs. NCBI nr
Match: KAA0040420.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 9.9e-19
Identity = 51/63 (80.95%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 89  LFGLSYTEGIKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES 148
           LF LSY EG KRPRGNR SLQTG+LDKTVEIELP+PDTLPT AES  S+SSTWLELY ES
Sbjct: 19  LFSLSYPEGTKRPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSSTWLELYFES 78

Query: 149 VHI 152
           VH+
Sbjct: 79  VHV 81

[Close]

BLAST of Spg015596 vs. NCBI nr
Match: KAA0025357.1 (hypothetical protein E6C27_scaffold1204G00410 [Cucumis melo var. makuwa] >TYK23443.1 hypothetical protein E5676_scaffold605G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-17
Identity = 53/80 (66.25%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 89  LFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSA 148
           LFGLSY EG KRP+GNR SLQTGELDKT                 VEIELPVPDTLPTSA
Sbjct: 19  LFGLSYPEGTKRPKGNRLSLQTGELDKTVIFLLSTLSVLRDNDVVVEIELPVPDTLPTSA 78

Query: 149 ESSRSSSSTWLELYIESVHI 152
           ES RS+S+TWLELY ES+H+
Sbjct: 79  ESFRSNSNTWLELYFESIHV 98

[Close]

BLAST of Spg015596 vs. NCBI nr
Match: KAA0051980.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 2.1e-16
Identity = 53/80 (66.25%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 89  LFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSA 148
           LFGL Y EG KRPRGNR+SLQTGELDKT                 VEIELPVPDTLPTSA
Sbjct: 19  LFGLGYPEGTKRPRGNRTSLQTGELDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSA 78

Query: 149 ESSRSSSSTWLELYIESVHI 152
           ESS S+SSTWLEL  E VH+
Sbjct: 79  ESSGSNSSTWLELNFEFVHV 98

[Close]

BLAST of Spg015596 vs. NCBI nr
Match: KAA0062263.1 (hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 3.9e-15
Identity = 43/60 (71.67%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 92  LSYTEGIKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI 151
           +S  E ++ PRGNR SLQ G+L+KTVEIELP+PDTLPTS+ESS+S+SSTWLELY ESVH+
Sbjct: 82  ISNLENLEMPRGNRPSLQIGKLEKTVEIELPMPDTLPTSSESSKSNSSTWLELYFESVHV 141

[Close]

BLAST of Spg015596 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 3.6e-22
Identity = 64/108 (59.26%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 66  IKEKVHAKPAIAESGCKLSTSGFLFGLSYTEGIK----------------------RPRG 125
           I EKV+AKPAIAESGC       LFGLSY E ++                       PRG
Sbjct: 22  IIEKVNAKPAIAESGCNCQPLIVLFGLSYLEELRGESTRFLSKSGGFLVFSDALSILPRG 81

Query: 126 NRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI 152
           NR +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTWLELY ESVH+
Sbjct: 82  NRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHV 129

[Close]

BLAST of Spg015596 vs. ExPASy TrEMBL
Match: A0A5A7TAS6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00450 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 4.8e-19
Identity = 51/63 (80.95%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 89  LFGLSYTEGIKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES 148
           LF LSY EG KRPRGNR SLQTG+LDKTVEIELP+PDTLPT AES  S+SSTWLELY ES
Sbjct: 19  LFSLSYPEGTKRPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSSTWLELYFES 78

Query: 149 VHI 152
           VH+
Sbjct: 79  VHV 81

[Close]

BLAST of Spg015596 vs. ExPASy TrEMBL
Match: A0A5D3DIM8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00460 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 6.9e-18
Identity = 53/80 (66.25%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 89  LFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSA 148
           LFGLSY EG KRP+GNR SLQTGELDKT                 VEIELPVPDTLPTSA
Sbjct: 19  LFGLSYPEGTKRPKGNRLSLQTGELDKTVIFLLSTLSVLRDNDVVVEIELPVPDTLPTSA 78

Query: 149 ESSRSSSSTWLELYIESVHI 152
           ES RS+S+TWLELY ES+H+
Sbjct: 79  ESFRSNSNTWLELYFESIHV 98

[Close]

BLAST of Spg015596 vs. ExPASy TrEMBL
Match: A0A5A7U9X4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002130 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.0e-16
Identity = 53/80 (66.25%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 89  LFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSA 148
           LFGL Y EG KRPRGNR+SLQTGELDKT                 VEIELPVPDTLPTSA
Sbjct: 19  LFGLGYPEGTKRPRGNRTSLQTGELDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSA 78

Query: 149 ESSRSSSSTWLELYIESVHI 152
           ESS S+SSTWLEL  E VH+
Sbjct: 79  ESSGSNSSTWLELNFEFVHV 98

[Close]

BLAST of Spg015596 vs. ExPASy TrEMBL
Match: A0A5A7V2F2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00320 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.9e-15
Identity = 43/60 (71.67%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 92  LSYTEGIKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI 151
           +S  E ++ PRGNR SLQ G+L+KTVEIELP+PDTLPTS+ESS+S+SSTWLELY ESVH+
Sbjct: 82  ISNLENLEMPRGNRPSLQIGKLEKTVEIELPMPDTLPTSSESSKSNSSTWLELYFESVHV 141

The following BLAST results are available for this feature:

BLAST of Spg015596 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052218.1	7.3e-22	59.26	uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0040420.1	9.9e-19	80.95	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0025357.1	1.4e-17	66.25	hypothetical protein E6C27_scaffold1204G00410 [Cucumis melo var. makuwa] >TYK234...	[more]
KAA0051980.1	2.1e-16	66.25	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 D...	[more]
KAA0062263.1	3.9e-15	71.67	hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]	[more]

BLAST of Spg015596 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg015596 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UAH6	3.6e-22	59.26	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7TAS6	4.8e-19	80.95	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3DIM8	6.9e-18	66.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U9X4	1.0e-16	66.25	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7V2F2	1.9e-15	71.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Spg015596 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 165..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg015596.1	Spg015596.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0016740	transferase activity