Spg015555 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg015555
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDUF4216 domain-containing protein
Locationscaffold10: 14980496 .. 14983252 (-)
RNA-Seq ExpressionSpg015555
SyntenySpg015555
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGCGTCGAAACGCCCAAAGAGCAGCGTCGAAACGCTGGTCTGCGGATGGGTCTATCTTCAATCTTCCAACTTTGATTCTTTTTTCATTCTTCGGCTTCTTTTTGCATCCCGAACATCCAATTGGCTCAAAACTATATTTCCTACAAATACAACACATAAGTGCATAATTTTGGCCAATAAATTATAAAAGACTAGCTAAATTATTTAGGGAAAACTAACTACCTATGCTCGCTATCAACACCTAAAACACGTTGGAAGTTGGAAGTTTAAAAAGTATATCAATGGTGTTATTGATATATTGTATATCAGGTACATCATTCATTTATTTAGTGTACTGATATACTAGATATTTGGTATATCAATCAACTGATATACTAAATATATAGTATATTAGATGTATATTTCATGAATATAATATACTTCATTTATGAAGTATACACATGAGCTTTCATTAGTTTAGATGTCTTTGATATACTTTATCAATAAAGAATTAGATATATTAGCTTTATTTTAGGACAATATGTGTGGTAGGGGATTTAAACCTCTAACCTCTTGGTTGAATGTGTATATCTTATGCTAGTTGAGCTATGCTCATGTTGACAAATATGTCATCAATATAATATACATCATCTGAATAATATACTACTGATGCACTAATGATATACTTGAAATTACATTTTTAGTGAGTGTTAATACACTAATAATATACCTAAAATTGCATCTTATTGATATACTTATAACAAATTTTGCATTCCACGACCTTCATAATACACCAACAATTAAAAATATATATCAGTGATTTTTTTTAATAACAAGTCTATCATTGATGTATTTAGCTGCTCATAATCAGATATATCAATGTTATTAATTATTTGAGTAGTATAAAAAATGAGGTAAGTTAAAAAAAAAGGAAAATTACACTTTTGGTCCCTGAGGTTTGGTTTAGGTTTCGTTTTGGTCTCTGAGGTTTCAAACTCAACATTTTAGTCCCTGAGGTTTGCATTTAGTAGCATTTTGGTCCCTCCATCCATTTTTCCGTTAAAAACTAACGGTTTGCTGACGTGGCACCTATTTTTTTTATTAAAAATTTATTTTTTAAAATTTAAAAATAAAATAATAATTAAATAATTAAAAAATAATTTTTAAAAAATTTCATTTTCACTCTTCTTTTTCCCCCTCATTTCTTATTTTTCTCAACCTAACCATCATTTTCTTCTTTCAACCAACATCCTCCTTCTTTAAGTCCGGCGGCGCTTTTTTTTTTTTTTTCCTTCTTCTTCTTCTCCTCGTCCTCTCTTCTTCTCCCACTTTCTTCTTCTTCTTCTTCTTTTTTTTTTTTAATAGAACAAAGGAGGGAGGGAGGAGGGACCTCCCTCCTCCTCGGTTTCCCACCGAAAATCGAGGAGATCCCCGTCCAGATCTGGGCGGAAAGGGAGGAGGGACCTCCCTCCTCCTCGGTATGTTCTAACCAACTGTGACAAAGTATCCCGTGACGAATTACAAAAAGCTCATTGGTATGTTCTAACCAACTGTGAAGCAGTAGATCCATATAGAAGGTATGAACTTCACGTACATTAACACAAAATCTTTTATTGTAGTTTTTTACTTATTGTTGATTTCATGTCAGTAGTGAACATGAGGTTGAGCTAAGGAATAAGAGTCAAGATAATATTCCTAGAATACATGAAGCACAATTTCCAATGTGGTTTAAAAATAAAGTGAGTTTTTACCATTTTAGTTTACGTGAAAATTGTCGTAGATACAACTGTATGGTAATTTGTCCATTTTATATCTTTGTTTTTAGATTCAATCCCAAGTTCAGTCGACGTCAAATGAAGTTGAGCGAGAGTTATATGCACTATCATGTGGTCCTGATAATCGAATTAGTTCGTATAGTGGGTGTATTGTTAATGGTGTTCGATTTAGCTGCAAGGATCGGGATGATTGTTGCACAACTCAAAATAGTGGAGTTTGTGTTTTCAGAGGACATGATAGTGAGGGGCCAACTTCTATAGTATCTTGAAAGAAGTGATCGGATTGAAATATGTTGATAGGAAAAACGTCATTTTATTCCGTTGTGATTGGTTTGATACAAATCCCAGAAGAAATCGAATTCGTGAGACCACAATTTCACAAGCGTAGATACTCGATATTTTTGGTATCAGAATGAACCATTCATTCTTGCTTCCCAAGCACAACAGGTATTTTATGTTGACGATATTCAATTAGGTCATGGGTGGAAGATAGTTCAAAGAGTTGAACATAGACATTTATGGGATGTGGCTGAAATAGAAAAAGTTTGTTTTGACGTGTATAGGGAAAAATGGTAGCGTTAACCCAAGAGCAAGCCAGCTCGAGTACACCAATGGATGATGATGAAGTTATGGCTACTGTTCTCGAAAAAAGACCATCGTATGTTAAAGGGATGGGATATGGTCCACAGCCACCACAGAGTCAGAAGACAAATTATTCACAAGAGTATGTCCAATCATTAGAGACTCGCCTAGTAAGGACTGAAGAATGTTTGGAGAATCAAGTACGAGAAATGAAGGAATCAGACTCTCGATTGAAGGAACAAATGAAGGAACAAATGGAAGAACTATTGGCCATGCAGCGTCAAGAGTATGAAAGAAAATTTAGCCAAATGAATGAAATCTTAGAAAGATTCACTGGAGCAAATCCATCAGCTAGAAAGGTAAAGTTTTCGTACCTTCTTCATGTTCATACTACTTTCGTAACTTTGAGACTTTGA

mRNA sequence

ATGTCAGCGTCGAAACGCCCAAAGAGCAGCGTCGAAACGCTGAACAAAGGAGGGAGGGAGGAGGGACCTCCCTCCTCCTCGGTTTCCCACCGAAAATCGAGGAGATCCCCGTCCAGATCTGGGCGGAAAGGGAGGAGGGACCTCCCTCCTCCTCGGTATGTTCTAACCAACTGTGACAAAGTATCCCGTGACGAATTACAAAAAGCTCATTGGTATGTTCTAACCAACTGTGAAGCAGTAGATCCATATAGAAGTAGTGAACATGAGGTTGAGCTAAGGAATAAGAGTCAAGATAATATTCCTAGAATACATGAAGCACAATTTCCAATGTGGTTTAAAAATAAAATTCAATCCCAAGTTCAGTCGACGTCAAATGAAGTTGAGCGAGAGTTATATGCACTATCATGTGGTCCTGATAATCGAATTAGTTCGTATAGTGGGTGTATTGTTAATGGTGTTCGATTTAGCTGCAAGGATCGGGATGATTGTTGCACAACTCAAAATAGTGGAGTTTGTAATGAACCATTCATTCTTGCTTCCCAAGCACAACAGGGAAAAATGGTAGCGTTAACCCAAGAGCAAGCCAGCTCGAGTACACCAATGGATGATGATGAAGTTATGGCTACTGTTCTCGAAAAAAGACCATCGTATGTTAAAGGGATGGGATATGGTCCACAGCCACCACAGAGTCAGAAGACAAATTATTCACAAGAGTATGTCCAATCATTAGAGACTCGCCTAGTAAGGACTGAAGAATGTTTGGAGAATCAAGTACGAGAAATGAAGGAATCAGACTCTCGATTGAAGGAACAAATGAAGGAACAAATGGAAGAACTATTGGCCATGCAGCGTCAAGAGTATGAAAGAAAATTTAGCCAAATGAATGAAATCTTAGAAAGATTCACTGGAGCAAATCCATCAGCTAGAAAGGTAAAGTTTTCGTACCTTCTTCATGTTCATACTACTTTCGTAACTTTGAGACTTTGA

Coding sequence (CDS)

ATGTCAGCGTCGAAACGCCCAAAGAGCAGCGTCGAAACGCTGAACAAAGGAGGGAGGGAGGAGGGACCTCCCTCCTCCTCGGTTTCCCACCGAAAATCGAGGAGATCCCCGTCCAGATCTGGGCGGAAAGGGAGGAGGGACCTCCCTCCTCCTCGGTATGTTCTAACCAACTGTGACAAAGTATCCCGTGACGAATTACAAAAAGCTCATTGGTATGTTCTAACCAACTGTGAAGCAGTAGATCCATATAGAAGTAGTGAACATGAGGTTGAGCTAAGGAATAAGAGTCAAGATAATATTCCTAGAATACATGAAGCACAATTTCCAATGTGGTTTAAAAATAAAATTCAATCCCAAGTTCAGTCGACGTCAAATGAAGTTGAGCGAGAGTTATATGCACTATCATGTGGTCCTGATAATCGAATTAGTTCGTATAGTGGGTGTATTGTTAATGGTGTTCGATTTAGCTGCAAGGATCGGGATGATTGTTGCACAACTCAAAATAGTGGAGTTTGTAATGAACCATTCATTCTTGCTTCCCAAGCACAACAGGGAAAAATGGTAGCGTTAACCCAAGAGCAAGCCAGCTCGAGTACACCAATGGATGATGATGAAGTTATGGCTACTGTTCTCGAAAAAAGACCATCGTATGTTAAAGGGATGGGATATGGTCCACAGCCACCACAGAGTCAGAAGACAAATTATTCACAAGAGTATGTCCAATCATTAGAGACTCGCCTAGTAAGGACTGAAGAATGTTTGGAGAATCAAGTACGAGAAATGAAGGAATCAGACTCTCGATTGAAGGAACAAATGAAGGAACAAATGGAAGAACTATTGGCCATGCAGCGTCAAGAGTATGAAAGAAAATTTAGCCAAATGAATGAAATCTTAGAAAGATTCACTGGAGCAAATCCATCAGCTAGAAAGGTAAAGTTTTCGTACCTTCTTCATGTTCATACTACTTTCGTAACTTTGAGACTTTGA

Protein sequence

MSASKRPKSSVETLNKGGREEGPPSSSVSHRKSRRSPSRSGRKGRRDLPPPRYVLTNCDKVSRDELQKAHWYVLTNCEAVDPYRSSEHEVELRNKSQDNIPRIHEAQFPMWFKNKIQSQVQSTSNEVERELYALSCGPDNRISSYSGCIVNGVRFSCKDRDDCCTTQNSGVCNEPFILASQAQQGKMVALTQEQASSSTPMDDDEVMATVLEKRPSYVKGMGYGPQPPQSQKTNYSQEYVQSLETRLVRTEECLENQVREMKESDSRLKEQMKEQMEELLAMQRQEYERKFSQMNEILERFTGANPSARKVKFSYLLHVHTTFVTLRL
Homology
BLAST of Spg015555 vs. NCBI nr
Match: RVW66346.1 (hypothetical protein CK203_065230 [Vitis vinifera])

HSP 1 Score: 120.6 bits (301), Expect = 2.6e-23
Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 0

Query: 62  SRDELQKAHWYVLTNCEAVDPYRSSEHEVELRNKSQDNIPRIHEAQFPMWFKNKIQSQVQ 121
           S++EL KAHWY++ NC  + PY   EH  EL   S  N+ +  E +FP W  +++++   
Sbjct: 642 SKEELTKAHWYIMNNCPELRPY-LDEHTKELERTSSHNLEKRQEQEFPKWLADRMKALRV 701

Query: 122 STSNEVERELYALSCGPDNRISSYSGCIVNGVRFSCKDRDDCCTTQNSGVC 173
             S E   ELY+L+CGPDNR+ +Y GCIVNGVRF  KDRDD   TQNSG+C
Sbjct: 702 KQSPEATDELYSLACGPDNRVHTYMGCIVNGVRFHTKDRDDRRITQNSGIC 751

BLAST of Spg015555 vs. NCBI nr
Match: RVW74856.1 (hypothetical protein CK203_053854 [Vitis vinifera])

HSP 1 Score: 120.6 bits (301), Expect = 2.6e-23
Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 0

Query: 62  SRDELQKAHWYVLTNCEAVDPYRSSEHEVELRNKSQDNIPRIHEAQFPMWFKNKIQSQVQ 121
           S++EL KAHWY++ NC  + PY   EH  EL   S  N+ +  E +FP W  +++++   
Sbjct: 824 SKEELTKAHWYIMNNCPELRPY-LDEHTKELEKTSSHNLEKRQEQEFPKWLADRMKALRV 883

Query: 122 STSNEVERELYALSCGPDNRISSYSGCIVNGVRFSCKDRDDCCTTQNSGVC 173
             S E   ELY+L+CGPDNR+ +Y GCIVNGVRF  KDRDD   TQNSG+C
Sbjct: 884 KQSPEATDELYSLACGPDNRVHTYMGCIVNGVRFHTKDRDDRRITQNSGIC 933

BLAST of Spg015555 vs. NCBI nr
Match: RVX04705.1 (hypothetical protein CK203_024978 [Vitis vinifera])

HSP 1 Score: 120.6 bits (301), Expect = 2.6e-23
Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 0

Query: 62  SRDELQKAHWYVLTNCEAVDPYRSSEHEVELRNKSQDNIPRIHEAQFPMWFKNKIQSQVQ 121
           S++EL KAHWY++ NC  + PY   EH  EL   S  N+ +  E +FP W  +++++   
Sbjct: 334 SKEELTKAHWYIMNNCPELRPY-LDEHTKELEKTSSHNLEKRQEQEFPKWLADRMKALRV 393

Query: 122 STSNEVERELYALSCGPDNRISSYSGCIVNGVRFSCKDRDDCCTTQNSGVC 173
             S E   ELY+L+CGPDNR+ +Y GCIVNGVRF  KDRDD   TQNSG+C
Sbjct: 394 KQSPEATDELYSLACGPDNRVHTYMGCIVNGVRFHTKDRDDRRITQNSGIC 443

BLAST of Spg015555 vs. NCBI nr
Match: RVW51304.1 (hypothetical protein CK203_075478 [Vitis vinifera])

HSP 1 Score: 120.6 bits (301), Expect = 2.6e-23
Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 0

Query: 62  SRDELQKAHWYVLTNCEAVDPYRSSEHEVELRNKSQDNIPRIHEAQFPMWFKNKIQSQVQ 121
           S++EL KAHWY++ NC  + PY   EH  EL   S  N+ +  E +FP W  +++++   
Sbjct: 693 SKEELTKAHWYIMNNCPELRPY-LDEHTKELEKTSSHNLEKRQEQEFPKWLADRMKALRV 752

Query: 122 STSNEVERELYALSCGPDNRISSYSGCIVNGVRFSCKDRDDCCTTQNSGVC 173
             S E   ELY+L+CGPDNR+ +Y GCIVNGVRF  KDRDD   TQNSG+C
Sbjct: 753 KQSPEATDELYSLACGPDNRVHTYMGCIVNGVRFHTKDRDDRRITQNSGIC 802

BLAST of Spg015555 vs. NCBI nr
Match: RVW55021.1 (hypothetical protein CK203_117381 [Vitis vinifera])

HSP 1 Score: 120.6 bits (301), Expect = 2.6e-23
Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 0

Query: 62  SRDELQKAHWYVLTNCEAVDPYRSSEHEVELRNKSQDNIPRIHEAQFPMWFKNKIQSQVQ 121
           S++EL KAHWY++ NC  + PY   EH  EL   S  N+ +  E +FP W  +++++   
Sbjct: 156 SKEELTKAHWYIMNNCPELRPY-LDEHTKELERTSSHNLEKRQEQEFPKWLADRMKALRV 215

Query: 122 STSNEVERELYALSCGPDNRISSYSGCIVNGVRFSCKDRDDCCTTQNSGVC 173
             S E   ELY+L+CGPDNR+ +Y GCIVNGVRF  KDRDD   TQNSG+C
Sbjct: 216 KQSPEATDELYSLACGPDNRVHTYMGCIVNGVRFHTKDRDDRRITQNSGIC 265

BLAST of Spg015555 vs. ExPASy TrEMBL
Match: A0A438D9E3 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_097391 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-23
Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 0

Query: 62  SRDELQKAHWYVLTNCEAVDPYRSSEHEVELRNKSQDNIPRIHEAQFPMWFKNKIQSQVQ 121
           S++EL KAHWY++ NC  + PY   EH  EL   S  N+ +  E +FP W  +++++   
Sbjct: 824 SKEELTKAHWYIMNNCPELRPY-LDEHTKELERTSSHNLEKRQEQEFPKWLADRMKALRV 883

Query: 122 STSNEVERELYALSCGPDNRISSYSGCIVNGVRFSCKDRDDCCTTQNSGVC 173
             S E   ELY+L+CGPDNR+ +Y GCIVNGVRF  KDRDD   TQNSG+C
Sbjct: 884 KQSPEATDELYSLACGPDNRVHTYMGCIVNGVRFHTKDRDDRRITQNSGIC 933

BLAST of Spg015555 vs. ExPASy TrEMBL
Match: A0A438G2C1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_065230 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-23
Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 0

Query: 62  SRDELQKAHWYVLTNCEAVDPYRSSEHEVELRNKSQDNIPRIHEAQFPMWFKNKIQSQVQ 121
           S++EL KAHWY++ NC  + PY   EH  EL   S  N+ +  E +FP W  +++++   
Sbjct: 642 SKEELTKAHWYIMNNCPELRPY-LDEHTKELERTSSHNLEKRQEQEFPKWLADRMKALRV 701

Query: 122 STSNEVERELYALSCGPDNRISSYSGCIVNGVRFSCKDRDDCCTTQNSGVC 173
             S E   ELY+L+CGPDNR+ +Y GCIVNGVRF  KDRDD   TQNSG+C
Sbjct: 702 KQSPEATDELYSLACGPDNRVHTYMGCIVNGVRFHTKDRDDRRITQNSGIC 751

BLAST of Spg015555 vs. ExPASy TrEMBL
Match: A0A438F4W4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_117381 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-23
Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 0

Query: 62  SRDELQKAHWYVLTNCEAVDPYRSSEHEVELRNKSQDNIPRIHEAQFPMWFKNKIQSQVQ 121
           S++EL KAHWY++ NC  + PY   EH  EL   S  N+ +  E +FP W  +++++   
Sbjct: 156 SKEELTKAHWYIMNNCPELRPY-LDEHTKELERTSSHNLEKRQEQEFPKWLADRMKALRV 215

Query: 122 STSNEVERELYALSCGPDNRISSYSGCIVNGVRFSCKDRDDCCTTQNSGVC 173
             S E   ELY+L+CGPDNR+ +Y GCIVNGVRF  KDRDD   TQNSG+C
Sbjct: 216 KQSPEATDELYSLACGPDNRVHTYMGCIVNGVRFHTKDRDDRRITQNSGIC 265

BLAST of Spg015555 vs. ExPASy TrEMBL
Match: A0A438EUD1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_075478 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-23
Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 0

Query: 62  SRDELQKAHWYVLTNCEAVDPYRSSEHEVELRNKSQDNIPRIHEAQFPMWFKNKIQSQVQ 121
           S++EL KAHWY++ NC  + PY   EH  EL   S  N+ +  E +FP W  +++++   
Sbjct: 693 SKEELTKAHWYIMNNCPELRPY-LDEHTKELEKTSSHNLEKRQEQEFPKWLADRMKALRV 752

Query: 122 STSNEVERELYALSCGPDNRISSYSGCIVNGVRFSCKDRDDCCTTQNSGVC 173
             S E   ELY+L+CGPDNR+ +Y GCIVNGVRF  KDRDD   TQNSG+C
Sbjct: 753 KQSPEATDELYSLACGPDNRVHTYMGCIVNGVRFHTKDRDDRRITQNSGIC 802

BLAST of Spg015555 vs. ExPASy TrEMBL
Match: A0A438J0W7 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_016440 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-23
Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 0

Query: 62  SRDELQKAHWYVLTNCEAVDPYRSSEHEVELRNKSQDNIPRIHEAQFPMWFKNKIQSQVQ 121
           S++EL KAHWY++ NC  + PY   EH  EL   S  N+ +  E +FP W  +++++   
Sbjct: 179 SKEELTKAHWYIMNNCPELRPY-LDEHTKELEKTSSHNLEKRQEQEFPKWLADRMKALRV 238

Query: 122 STSNEVERELYALSCGPDNRISSYSGCIVNGVRFSCKDRDDCCTTQNSGVC 173
             S E   ELY+L+CGPDNR+ +Y GCIVNGVRF  KDRDD   TQNSG+C
Sbjct: 239 KQSPEATDELYSLACGPDNRVHTYMGCIVNGVRFHTKDRDDRRITQNSGIC 288

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RVW66346.12.6e-2349.55hypothetical protein CK203_065230 [Vitis vinifera][more]
RVW74856.12.6e-2349.55hypothetical protein CK203_053854 [Vitis vinifera][more]
RVX04705.12.6e-2349.55hypothetical protein CK203_024978 [Vitis vinifera][more]
RVW51304.12.6e-2349.55hypothetical protein CK203_075478 [Vitis vinifera][more]
RVW55021.12.6e-2349.55hypothetical protein CK203_117381 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A438D9E31.3e-2349.55Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_097391 PE=4 SV=1[more]
A0A438G2C11.3e-2349.55Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_065230 PE=4 SV=1[more]
A0A438F4W41.3e-2349.55Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_117381 PE=4 SV=1[more]
A0A438EUD11.3e-2349.55Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_075478 PE=4 SV=1[more]
A0A438J0W71.3e-2349.55Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_016440 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 240..289
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg015555.1Spg015555.1mRNA