Spg015502 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg015502
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Locationscaffold10: 10936404 .. 10938651 (+)
RNA-Seq ExpressionSpg015502
SyntenySpg015502
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAGGCAATTCTTCTTTCGTGCGTTTTCGTGTTGGCGTCGAGACGCCGTGGCCGACGTCTCAATTGACAGTGATTTGGGCGGTCCTCTATTTACATAGCGTCGAGACGCCGAGAGGTAGCGTCGAGACGCTACCTCTCGGGTCACCCTTGTTTGGCTGCTTCAATTTTGCTTCTTTTGACATCGTTTTCGAGTCTTGAGTGCTTCGCTTTGGTCCTTTCACCGTATTGACATCCCGTGAACTTCAAGATGGATCAAAACAACGTTAATTTTCTCCAATTGATGTCAATTTGGAATATCGGCTCCTGAGAAGCTCTAACGCCAAACATCTATAAATAATACAATTAAGCATAATAATTAACATATCAATAACCCTAATCAAATAAACTAAACATCCTAGGTTGTTAGTATGAGACTTGAACTAGTATGTGGGGACATACGGGGATCACTGTTCAAGTTACAGCCTAAAGGGTCTATAGTATAGGGGTAAGGCTTGGTACCTTATCCTGGTGACACTATGGATACGACTCACTATGTATTATGATACAAACACAATGATCTAACGCGTTCATGTAGTGGACATGCGAGTGGGGGTATCCTATGCAATGAGTTTGCATCAGACCAGACCGCGAAATAGTTAACCACTAGCTGTAACACCATTAGCTAGTTAGGTTTCTATTTCACTAGGATGACCTAGGCAACTTGGTCTCAATCCTGAGTGGGTTATGGACTCCTGTTCATGAGGGATTGTCCTTTGATTTGTATGGGTGAGAGTGGCCTACCATTTTGGGGACAATACCGAGTGGGGAGCTGGGAACATAATCACACAAGATGGAATTCACTTCTTCCCGACTCTAGGGTAAGTAGAGGTGTGTTCCCTTAAGTGGTGTCTCCGGGTCTTGAACAATGGGCCCTGCCCTCTCAATGGCACGAGAGGGACTTCTGTTTGTAGGTTGGAACTCAAACAGGTTGTTCATTAGAGGAGAACTGGGAACTTAAGGACAAAGATGTAACCCAGGGGTAAAACGGTAATTTGACCTAGGTGGGGTTACGAACACACGTGAAGGACTGACTTGCTGTTATTGGTCGATATCCGTGGACACAGAAATATATCTACCGTGAGAAGAGTGCAGTTGTGGTTCTATAGTAGAGTGAACCACAGTTAACGAATATTGATTAACTTGGTTAATGAGTTTAGCCAATTAATCTCATATCGTTGGAGCTTTTGATCTGTAGGTCCATTAGGTCTCATCGGTAGCTCATTTAGGGCGTTGAGGTTAAATTCTAAGGGAGAATTGAATATTTGAAGGGGTTCGAATATTAAGTTTAAAATATGAATTTGATTCATATTAAAACTATAGGTTATAATTAATGTGCATTGGATGCACATTAATACTATAGGTTATATAAGAGAAATATAATTAAATATATGATATTTAATTATAACATTAATTAATTATTAAATTAATTAATCTTTTGTTTTAATTTAATTTAATTAAATCTGATTTAATTAAATTACATTAAAACTATAGGTTATATGGGAATATGATTTATATAATTAAATTAAATCAATTGTTGATTTCTTTTTCAAAAAAAAAAAAAAAAATCAATTGTTGATTTCATTAAATTAATAAAATTATTAATTTTGATTAATAATAATTTTAATTAACTTTATCAGTTTTGATAACTGATAAATCAATATTTTCCCATAACTGAAGGAGGCACCTTCAACGTGGAGGGTTTTTATGCAAGAGGTGTGATAAGGGTAAAAAATATACCTATTTTACCCTTATATTTAGCTCATTTCCTTGTTAAAAGTTGCATGTTTAGATCAATTTTACTATTCATGAGCTCAAAATATGTTAAAGTTGTTGAATTAAGGAGTTGAGTCACATTTGTCAAATTATGCTTATTTGTGCTTAACAAGACTCAATTTGATATGAATCTGACCCAATTTGGTGTTGTGCAGGAAAATAGAGGAAAGATGGAAATTGGTCAGAAATGCGACCGCATTTCTGGAAAAACAGAGGTCGTTTCGAGTCCTTCGCAGGTTGTTTTGAACGAGACTTTTGGCACCTAACCAGCTGTTTTGACCTCGAAAATGAATGGGCTACCTACTAGCACCTATTTCGTGGCTCCTCAACTACTCCCCACGCGATATAAACTCTTGATTCGAAGATGAATTCAAGCAGAACTCACTGGGAAGAAGAGGGTGTTGACAGAACCCTAGTAGACGCCCATGAGTAG

mRNA sequence

ATGCTAGGCAATTCTTCTTTCGTGCGTTTTCGTGTTGGCGTCGAGACGCCGTGGCCGACGTCTCAATTGACAGTGATTTGGGCGGTCCTCTATTTACATAGCGTCGAGACGCCGAGAGTGCTTCGCTTTGGTCCTTTCACCGTATTGACATCCCGTGAACTTCAAGATGGATCAAAACAACTGGGTTATGGACTCCTGTTCATGAGGGATTGTCCTTTGATTTGTATGGGTGAGAGTGGCCTACCATTTTGGGGACAATACCGAGTGGGGAGCTGGGAACATAATCACACAAGATGGAATTCACTTCTTCCCGACTCTAGGGTTGGAACTCAAACAGGTTGTTCATTAGAGGAGAACTGGGAACTTAAGGACAAAGATGTAACCCAGGGGTCCATTAGGTCTCATCGGAAAATAGAGGAAAGATGGAAATTGGTCAGAAATGCGACCGCATTTCTGGAAAAACAGAGGTCGTTTCGAGTCCTTCGCAGAACTCACTGGGAAGAAGAGGGTGTTGACAGAACCCTAGTAGACGCCCATGAGTAG

Coding sequence (CDS)

ATGCTAGGCAATTCTTCTTTCGTGCGTTTTCGTGTTGGCGTCGAGACGCCGTGGCCGACGTCTCAATTGACAGTGATTTGGGCGGTCCTCTATTTACATAGCGTCGAGACGCCGAGAGTGCTTCGCTTTGGTCCTTTCACCGTATTGACATCCCGTGAACTTCAAGATGGATCAAAACAACTGGGTTATGGACTCCTGTTCATGAGGGATTGTCCTTTGATTTGTATGGGTGAGAGTGGCCTACCATTTTGGGGACAATACCGAGTGGGGAGCTGGGAACATAATCACACAAGATGGAATTCACTTCTTCCCGACTCTAGGGTTGGAACTCAAACAGGTTGTTCATTAGAGGAGAACTGGGAACTTAAGGACAAAGATGTAACCCAGGGGTCCATTAGGTCTCATCGGAAAATAGAGGAAAGATGGAAATTGGTCAGAAATGCGACCGCATTTCTGGAAAAACAGAGGTCGTTTCGAGTCCTTCGCAGAACTCACTGGGAAGAAGAGGGTGTTGACAGAACCCTAGTAGACGCCCATGAGTAG

Protein sequence

MLGNSSFVRFRVGVETPWPTSQLTVIWAVLYLHSVETPRVLRFGPFTVLTSRELQDGSKQLGYGLLFMRDCPLICMGESGLPFWGQYRVGSWEHNHTRWNSLLPDSRVGTQTGCSLEENWELKDKDVTQGSIRSHRKIEERWKLVRNATAFLEKQRSFRVLRRTHWEEEGVDRTLVDAHE
Homology
[Close]
BLAST of Spg015502 vs. NCBI nr
Match: TYK05792.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 6.3e-11
Identity = 37/71 (52.11%), Postives = 45/71 (63.38%), Query Frame = 0 

Query: 45  PFT-VLTSRELQDGSKQLGYGLLFMRDCPLICMGESG-------LPFWGQYRVGSWEHNH 104
           PFT  L ++  +   + LG   +++RDCPL C GESG       L FWGQ RVGSWEHNH
Sbjct: 542 PFTKTLRAKVFEGHPESLGLRDMYIRDCPLTCTGESGQIVDSICLSFWGQDRVGSWEHNH 601

Query: 105 TRWNSLLPDSR 108
           TRWNS +P  R
Sbjct: 602 TRWNSRIPTFR 612

[Close]
BLAST of Spg015502 vs. NCBI nr
Match: KAA0026081.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-07
Identity = 30/44 (68.18%), Postives = 32/44 (72.73%), Query Frame = 0 

Query: 68  MRDCPLICMGESG-------LPFWGQYRVGSWEHNHTRWNSLLP 105
           MRDCPLIC GESG       L F GQ R+GSWEHN+TRWN LLP
Sbjct: 93  MRDCPLICTGESGQIVDSICLSFLGQDRLGSWEHNYTRWNKLLP 136

[Close]
BLAST of Spg015502 vs. NCBI nr
Match: KAA0047821.1 (uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-06
Identity = 30/45 (66.67%), Postives = 30/45 (66.67%), Query Frame = 0 

Query: 70  DCPLICMGESG-------LPFWGQYRVGSWEHNHTRWNSLLPDSR 108
           DCPLI   ESG       L FWGQ RV SWEHNHTRWNSLLP  R
Sbjct: 456 DCPLIYTSESGQIADSMFLSFWGQDRVESWEHNHTRWNSLLPTFR 500

[Close]
BLAST of Spg015502 vs. NCBI nr
Match: TYK08698.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-04
Identity = 28/58 (48.28%), Postives = 36/58 (62.07%), Query Frame = 0 

Query: 45  PFT-VLTSRELQDGSKQLGYGLLFMRDCPLICMGESG-------LPFWGQYRVGSWEH 95
           PFT  LT++  +   + LG   +++RDCPLIC GESG       L FWGQ RVG W+H
Sbjct: 284 PFTKTLTAKVFEGHIESLGLRDMYIRDCPLICTGESGQIADSIWLSFWGQDRVGRWKH 341

[Close]
BLAST of Spg015502 vs. NCBI nr
Match: KAA0049822.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-04
Identity = 28/58 (48.28%), Postives = 36/58 (62.07%), Query Frame = 0 

Query: 45  PFT-VLTSRELQDGSKQLGYGLLFMRDCPLICMGESG-------LPFWGQYRVGSWEH 95
           PFT  LT++  +   + LG   +++RDCPLIC GESG       L FWGQ RVG W+H
Sbjct: 284 PFTKTLTAKVFEGHIESLGLRDMYIRDCPLICTGESGQIADSIWLSFWGQDRVGRWKH 341

[Close]
BLAST of Spg015502 vs. ExPASy TrEMBL
Match: A0A5D3C3J6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002960 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.0e-11
Identity = 37/71 (52.11%), Postives = 45/71 (63.38%), Query Frame = 0 

Query: 45  PFT-VLTSRELQDGSKQLGYGLLFMRDCPLICMGESG-------LPFWGQYRVGSWEHNH 104
           PFT  L ++  +   + LG   +++RDCPL C GESG       L FWGQ RVGSWEHNH
Sbjct: 542 PFTKTLRAKVFEGHPESLGLRDMYIRDCPLTCTGESGQIVDSICLSFWGQDRVGSWEHNH 601

Query: 105 TRWNSLLPDSR 108
           TRWNS +P  R
Sbjct: 602 TRWNSRIPTFR 612

[Close]
BLAST of Spg015502 vs. ExPASy TrEMBL
Match: A0A5A7SPG1 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00120 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-07
Identity = 30/44 (68.18%), Postives = 32/44 (72.73%), Query Frame = 0 

Query: 68  MRDCPLICMGESG-------LPFWGQYRVGSWEHNHTRWNSLLP 105
           MRDCPLIC GESG       L F GQ R+GSWEHN+TRWN LLP
Sbjct: 93  MRDCPLICTGESGQIVDSICLSFLGQDRLGSWEHNYTRWNKLLP 136

[Close]
BLAST of Spg015502 vs. ExPASy TrEMBL
Match: A0A5A7U2P4 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00730 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.7e-07
Identity = 30/45 (66.67%), Postives = 30/45 (66.67%), Query Frame = 0 

Query: 70  DCPLICMGESG-------LPFWGQYRVGSWEHNHTRWNSLLPDSR 108
           DCPLI   ESG       L FWGQ RV SWEHNHTRWNSLLP  R
Sbjct: 456 DCPLIYTSESGQIADSMFLSFWGQDRVESWEHNHTRWNSLLPTFR 500

[Close]
BLAST of Spg015502 vs. ExPASy TrEMBL
Match: A0A5A7U202 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1591G00150 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.5e-05
Identity = 28/58 (48.28%), Postives = 36/58 (62.07%), Query Frame = 0 

Query: 45  PFT-VLTSRELQDGSKQLGYGLLFMRDCPLICMGESG-------LPFWGQYRVGSWEH 95
           PFT  LT++  +   + LG   +++RDCPLIC GESG       L FWGQ RVG W+H
Sbjct: 284 PFTKTLTAKVFEGHIESLGLRDMYIRDCPLICTGESGQIADSIWLSFWGQDRVGRWKH 341

[Close]
BLAST of Spg015502 vs. ExPASy TrEMBL
Match: A0A5D3CBX3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold118G00530 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.5e-05
Identity = 28/58 (48.28%), Postives = 36/58 (62.07%), Query Frame = 0 

Query: 45  PFT-VLTSRELQDGSKQLGYGLLFMRDCPLICMGESG-------LPFWGQYRVGSWEH 95
           PFT  LT++  +   + LG   +++RDCPLIC GESG       L FWGQ RVG W+H
Sbjct: 284 PFTKTLTAKVFEGHIESLGLRDMYIRDCPLICTGESGQIADSIWLSFWGQDRVGRWKH 341

The following BLAST results are available for this feature:
BLAST of Spg015502 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK05792.16.3e-1152.11gag/pol protein [Cucumis melo var. makuwa][more]
KAA0026081.12.5e-0768.18pol protein [Cucumis melo var. makuwa][more]
KAA0047821.11.6e-0666.67uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa][more]
TYK08698.11.1e-0448.28reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0049822.11.1e-0448.28reverse transcriptase [Cucumis melo var. makuwa][more]
BLAST of Spg015502 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg015502 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C3J63.0e-1152.11Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00296... [more]
A0A5A7SPG11.2e-0768.18Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00120 PE=... [more]
A0A5A7U2P47.7e-0766.67Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7U2025.5e-0548.28Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15... [more]
A0A5D3CBX35.5e-0548.28Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... [more]
BLAST of Spg015502 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg015502.1Spg015502.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0005488 binding