Spg015442 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg015442
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold10: 15044188 .. 15048275 (-)
RNA-Seq Expression	Spg015442
Synteny	Spg015442

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCAGAATTTGAGCTCTCTCCTAATAGGGCTGGTTGGTGCAGCCATCACTCTGTCAGCTTATTCTCAGACTTTGATTTCTCCAACTGAGTGTGTCACAGTGGGCCTTCTGGTTCTCATTTTTGGTCTTCTTGTTCATGAAGGTTTCATCTCTCTTTAGTCTTTTAACTTTTTTTTTTTTTTCCTTTCATTTGGGTAATTTCTCTGTAATTTATGTATCACAAAAGTCTTGAACTTCTGCTTTTGCTTCTATTTGCTCTTTCTTTTTTCAACCTAGAAATTATCATTTTGTGATCTTGTTGGATCCAAGATTTTGAGATCCATAATCATTTGGTCAATCTTTGCAAATCTGAAAATTTTAATGAAATGGGTACTGAGTTGATGTGATGCTTCAATTAGTTTCTTTGTACAAATCATGTAGGAAATTTTGTAGATCCCATCAAGGGATATGTTATTAATGGCTAATAGTACTTTTATTTATTTTTCTTAAAAAAAGCTAATGGCTAACAGTACTTGAAGATATTCAAAATTAGGAGTTAAATAAAAGGATTTGTAACCCTAATAATAATCTAGCTAGGAAAGGCTTTATCAAATTGAGCCTCACAAAGTCAAAATTTTATTGTTTGCTAGTTAGCTAATATGCCAAAACTCGTTTATATACCAAAGTACTATTCTCTCTCTTGTCCAATATCATACTTTTCATGTTTTAGCTTCATGAATCACTTATCTTATTGGGATTTGTGATGATATGTTGTAGATGTATGTAATGGTACGAGTCAAATTGTAAGATTTAATTATACAATAGTACCACGACGATAATAAATGTACCAACGAATAATTATACAGTTGAAATTGTAGATATGAACAAAAAATCACGATGGACTCAGAGATGTACACTCCCTCGATACCTTATCACATGAGAGAGAAAGCGAAAGTGATATGTACATTTCATACGTCAAACAAAATTACACCAACCTAAGGCTTTAAACGATGGTTTTAGTATTTACTATTGACTAATTTAACGTGTTTCTCAAAATTTCATGGTAATTAACATAATATTGTAAAAATGTTCTAAAAACAGAACCTTTTAGTTTGATGAACCACCTATGAATAACTTAATTAGCCTTTCTTCTCATAGCAAGCCACTTTTTTTTTTTAAATACACTCATAGCAAAACACTAATGGCTTAAAATATGACATTTGAAAATTCTAAACTCCCTCTAAATGTCTTAAACAAAAAAAAAAAAAAAAGAATAAAAATGGACTAATATAGAAAGCTATAGAATATAATTAAAAAAAAGGATGAGAAGGTCTTCACCAATTGGATGGATTTGGCAGTGTGAGCTTCATCGAAAAACCTTTTGCATGAAAGAAGGAGGAAGTTACATAGCCAGAGACGACTTGCCGACCAAAAAAAAAAACCCCCATTAAAAAAAATCCATAAATCATCATAAATTTAAGGTTAAAAGACAAGAAATTGATTTTCGGATTGATTAAGAATAAAGAAATCCCATTTGGCATTTGGAAACAAAATTAAATGGTTGTCGGCAAGTCATCCTTGGCTGCACCACTTGAAACCTCCTTCCCACATGCAACAGCTTTGATGAAAAATACCATGAAATCATATTTAGAAAAAGAAAATTCAAATCTCCCTCTCTTTCTTCTATTCTTCTTCCACTTTTAAGAATTGTGAGAAAAAGAGAGGGAGGAATAATGAATAGAAAATAGAAAATATAATTTTTTTTCCCCCAAAAAAGGAACAGAAGGAAGCAAGTGAAGAAAGAGGGAAAAAGATGAAGAAGAAGAAGGAAAGAAGAGGATTGGAGTGCAGAGACTTTGTTGACAGGACATGGACCAATGGGGGTTTATGAAGGGAAATGGAAAGTGAAAGACTACAAAAACTTCTTTTTTTAAAAAAAAAAATATATATATATATATATATATATATATATATATATATTTATTGAGAGTGCTTGTGAAGCTGTGCAAAGTATTAATGGTGTTAGGCCTATTATAGAGCTTACAGAACAGAACAGGGCAGTCAGCCAAAGAGGTGTCACAATTGTGTCCTTTTTATCCATTACTGCAAGGAAAAACAGTTGGTGAAAAGTGAATTGGATCTTGTTGGCTTTGGATGTCATATTCCATGCTTACAAACTTTTAACTCATATCCCGTTTTATAATCATTTGATTTTTGAAAATTTAAGTTATAAGCACTACTTTCACAACTTTCCATGTTTTCAAAAACCAAACCAAATTTTTGAAAACTAAAAAAAATAGGCTCCGTTTGATAACCATGTCGTTTTTTATTTTTGGTTTTTGAAAATTAAGCTTATAAACACTACTTTCACCCGCAACTTTCTTTGTTTTATTATATACAACCTTCCTATGTTTTCAAAAACTAAGTCAAAAATTGAAAAAAAAAAAAATAGTTTTCAAAAACTTTTTTTTGTTTTTGGAATTTGGCTAAGAACACAAATGTCTACATAACAAAAATGAAAACCATGGTAAGAAAATTGAAAGAAAACAAACATAAATTTCAAAAACCAAATGGTTATCAAACAGGACCCTAGTTTTCAAAAACTTGTTTTTGTTTTTGAAATTTAACTAGAAAATTCAAATGTGTCCATGACAAAGATAAAGACCATGGTAAGGAAATTGGGAGGAAAATAAGCCTAATTTTCAAAAATCAAAAACTAAAAACCAAATGGTTATGTTGGACTTTTACTTTGTTAATACTTTTGAAGTACCCATGGTGAGTTTGTTTGTAATAGCTTTGGAAGAAAAAGAACGTAGTGAAACACTTCCCATCTTTCAGAAAGTCATCCAAACTCATTCTATTTACGGTTACGTTTGAGAGTACTTTTGACAGAACTAAAATACTTCTGTCATGACTGGAACGATTTTCTTGCAAGTGATTAATAAGTTCTTTTGAAAAAGTAAAAATAAATAAATAAAGTTTTGTAGTAAAACATTTATAAAGTGTTTGTTAAAGTGTGAAACAAAATATTGAATTAAATTGTCAATAGCTACTTCATGTGCTTTTCCTAAAATCAAGAGTGCAAAACCAAACATCAAATAATTTGTCATTTAAACCTTAATTAATGTACTTTTTAAATCACTTAATTTAAAAACACTCTCAAATATATCAAAAGAGATATTTCATTTTTAAATGTTTCAGAAAGTATAAAATTTATTCTGAACTATGTAACCCAATAGCATCAAAATCTTGAATGACTTTTAATGTAGTAAAAGTACTCTTTCGAAGTTCCAAGCCTCAAACTCAACTTCTTAAATATTAGAGATATTTGTTGCAATCCTAGTAAGCTCTAAAAACAAAAGAAAATTAAAGTAACAATCAAAAGTATAGCTTCATGGGATAAGATACCTATGATCATTCCAAAAGTTAGTAGTTCGATCCCTCAAAAATTTTTTTAATACAACAACTGCCGCTAAGTTATGCTCACTCTAACCCTCACTCTACAATTGTTTAACTCAAAAAAATAACAAGTTATAAATTATTACGGTTCGGTTCGGTTTCGGTTTCGGTCTTTTCCTAAACCGAGACAACATTTTTACCCTAAAAATTAAAATGTTGCAGCCGTCTTCTTCTTCTCCCTTCTTCTCTCAGCAAATCGCTCGTCTTCTTCTCAGCAAATCGCCCGTCTCCCTTCTTCTCAGCAAATCGCCTGTCTCCCTTCTCGCATCGTCTTCGAAGCAAATCGCATGGTCTTCGAAGCAAAAATTAAAAGTTTAAATCGCATCGCTCACGGAAGGGAAGGAATCGAACAAAATCGGCTATTCTTTTGCAGGTCCTCATGCTGGTTGCTGGTGCTGGTGCTGGGAAGGAATCGAACGAAATCGGGTATCCTTTCAACTTCATCTTCAATTTCTAGGTTTTTGTTTTCATCTTCATCGTCTTCATCTGGGTTTTTGTTTTCATCTTCGTCGTCTTCATCTTTTGGGCCTTCTTCTCCCTTTTTCGCCGCTCTGTTTTCGAAGCTCGTGATTTCTCCCCTTCATCGCTCACTCCGTCATCGGGCCACTGCTGTTCCAAATCCTTGCTCACTTCTATACAACCGATAG

mRNA sequence

ATGAATCAGAATTTGAGCTCTCTCCTAATAGGGCTGGTTGGTGCAGCCATCACTCTGTCAGCTTATTCTCAGACTTTGATTTCTCCAACTGAGTGTGTCACAGTGGGCCTTCTGGTTCTCATTTTTGGTCTTCTTGTTCATGAAGCCGTCTTCTTCTTCTCCCTTCTTCTCTCAGCAAATCGCTCGTCTTCTTCTCAGCAAATCGCCCGTCTCCCTTCTTCTCAGCAAATCGCCTGTCTCCCTTCTCGCATCGTCTTCGAAGCAAATCGCATGGTCTTCGAAGCAAAAATTAAAAGTTTAAATCGCATCGCTCACGGAAGGGAAGGAATCGAACAAAATCGGCTATTCTTTTGCAGGTCCTCATGCTGGTTGCTGGTGCTGGTGCTGGGAAGGAATCGAACGAAATCGGGTATCCTTTCAACTTCATCTTCAATTTCTAGGTTTTTGTTTTCATCTTCATCGTCTTCATCTGGGTTTTTGTTTTCATCTTCGTCGTCTTCATCTTTTGGGCCTTCTTCTCCCTTTTTCGCCGCTCTGTTTTCGAAGCTCGTGATTTCTCCCCTTCATCGCTCACTCCGTCATCGGGCCACTGCTGTTCCAAATCCTTGCTCACTTCTATACAACCGATAG

Coding sequence (CDS)

ATGAATCAGAATTTGAGCTCTCTCCTAATAGGGCTGGTTGGTGCAGCCATCACTCTGTCAGCTTATTCTCAGACTTTGATTTCTCCAACTGAGTGTGTCACAGTGGGCCTTCTGGTTCTCATTTTTGGTCTTCTTGTTCATGAAGCCGTCTTCTTCTTCTCCCTTCTTCTCTCAGCAAATCGCTCGTCTTCTTCTCAGCAAATCGCCCGTCTCCCTTCTTCTCAGCAAATCGCCTGTCTCCCTTCTCGCATCGTCTTCGAAGCAAATCGCATGGTCTTCGAAGCAAAAATTAAAAGTTTAAATCGCATCGCTCACGGAAGGGAAGGAATCGAACAAAATCGGCTATTCTTTTGCAGGTCCTCATGCTGGTTGCTGGTGCTGGTGCTGGGAAGGAATCGAACGAAATCGGGTATCCTTTCAACTTCATCTTCAATTTCTAGGTTTTTGTTTTCATCTTCATCGTCTTCATCTGGGTTTTTGTTTTCATCTTCGTCGTCTTCATCTTTTGGGCCTTCTTCTCCCTTTTTCGCCGCTCTGTTTTCGAAGCTCGTGATTTCTCCCCTTCATCGCTCACTCCGTCATCGGGCCACTGCTGTTCCAAATCCTTGCTCACTTCTATACAACCGATAG

Protein sequence

MNQNLSSLLIGLVGAAITLSAYSQTLISPTECVTVGLLVLIFGLLVHEAVFFFSLLLSANRSSSSQQIARLPSSQQIACLPSRIVFEANRMVFEAKIKSLNRIAHGREGIEQNRLFFCRSSCWLLVLVLGRNRTKSGILSTSSSISRFLFSSSSSSSGFLFSSSSSSSFGPSSPFFAALFSKLVISPLHRSLRHRATAVPNPCSLLYNR

Homology

[Close]

BLAST of Spg015442 vs. NCBI nr
Match: XP_031737855.1 (uncharacterized protein LOC105435000 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 1.0e-12
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1  MNQNLSSLLIGLVGAAITLSAYSQTLISPTECVTVGLLVLIFGLLVHEAVFFFSL 56
          MNQNLSSLLIGLVGAAITLSAYSQTLISPTEC+TVGLLVLIFGLLV+E   F SL
Sbjct: 1  MNQNLSSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEG--FISL 53

[Close]

BLAST of Spg015442 vs. NCBI nr
Match: XP_016899638.1 (PREDICTED: uncharacterized protein LOC107990600 [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 1.0e-12
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1  MNQNLSSLLIGLVGAAITLSAYSQTLISPTECVTVGLLVLIFGLLVHEAVFFFSL 56
          MNQNLSSLLIGLVGAAITLSAYSQTLISPTEC+TVGLLVLIFGLLV+E   F SL
Sbjct: 33 MNQNLSSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEG--FISL 85

[Close]

BLAST of Spg015442 vs. NCBI nr
Match: XP_038905779.1 (uncharacterized protein LOC120091734 [Benincasa hispida])

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-12
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1  MNQNLSSLLIGLVGAAITLSAYSQTLISPTECVTVGLLVLIFGLLVHEAVFFFSL 56
          MNQNLSSLLIGLVGAAITLSAYSQTLISPTEC+T+GLLVLIFGLLV+E   F SL
Sbjct: 1  MNQNLSSLLIGLVGAAITLSAYSQTLISPTECITMGLLVLIFGLLVNEG--FISL 53

[Close]

BLAST of Spg015442 vs. NCBI nr
Match: XP_007032590.1 (PREDICTED: uncharacterized protein LOC18601549 [Theobroma cacao] >EOY03516.1 Uncharacterized protein TCM_018610 [Theobroma cacao])

HSP 1 Score: 81.6 bits (200), Expect = 8.6e-12
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  MNQNLSSLLIGLVGAAITLSAYSQTLISPTECVTVGLLVLIFGLLVHEAV 51
          MNQNLSSLLIGLVGAAITLSAYSQT ISPT+CVTVGLLVL+FGLLV E +
Sbjct: 1  MNQNLSSLLIGLVGAAITLSAYSQTFISPTQCVTVGLLVLMFGLLVREGL 50

[Close]

BLAST of Spg015442 vs. NCBI nr
Match: XP_022159078.1 (uncharacterized protein LOC111025520 [Momordica charantia])

HSP 1 Score: 81.6 bits (200), Expect = 8.6e-12
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1  MNQNLSSLLIGLVGAAITLSAYSQTLISPTECVTVGLLVLIFGLLVHEAV 51
          MN+NLSSLLIGLVGAAITLSAYSQT ISPTEC+TVGLLVLIFGLLV+E +
Sbjct: 40 MNRNLSSLLIGLVGAAITLSAYSQTWISPTECITVGLLVLIFGLLVNEGL 89

[Close]

BLAST of Spg015442 vs. ExPASy TrEMBL
Match: A0A1S4DUJ5 (uncharacterized protein LOC107990600 OS=Cucumis melo OX=3656 GN=LOC107990600 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.9e-13
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1  MNQNLSSLLIGLVGAAITLSAYSQTLISPTECVTVGLLVLIFGLLVHEAVFFFSL 56
          MNQNLSSLLIGLVGAAITLSAYSQTLISPTEC+TVGLLVLIFGLLV+E   F SL
Sbjct: 33 MNQNLSSLLIGLVGAAITLSAYSQTLISPTECITVGLLVLIFGLLVNEG--FISL 85

[Close]

BLAST of Spg015442 vs. ExPASy TrEMBL
Match: A0A061EF06 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_018610 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.2e-12
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  MNQNLSSLLIGLVGAAITLSAYSQTLISPTECVTVGLLVLIFGLLVHEAV 51
          MNQNLSSLLIGLVGAAITLSAYSQT ISPT+CVTVGLLVL+FGLLV E +
Sbjct: 1  MNQNLSSLLIGLVGAAITLSAYSQTFISPTQCVTVGLLVLMFGLLVREGL 50

[Close]

BLAST of Spg015442 vs. ExPASy TrEMBL
Match: A0A6J1DXU0 (uncharacterized protein LOC111025520 OS=Momordica charantia OX=3673 GN=LOC111025520 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.2e-12
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1  MNQNLSSLLIGLVGAAITLSAYSQTLISPTECVTVGLLVLIFGLLVHEAV 51
          MN+NLSSLLIGLVGAAITLSAYSQT ISPTEC+TVGLLVLIFGLLV+E +
Sbjct: 40 MNRNLSSLLIGLVGAAITLSAYSQTWISPTECITVGLLVLIFGLLVNEGL 89

[Close]

BLAST of Spg015442 vs. ExPASy TrEMBL
Match: A0A5D2PYY3 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A07G240600v1 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-11
Identity = 41/50 (82.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  MNQNLSSLLIGLVGAAITLSAYSQTLISPTECVTVGLLVLIFGLLVHEAV 51
          MNQN+SSLLIG+VGAA+TLSAYSQT ISPT+CVTVGLLVL+FGLLV E +
Sbjct: 1  MNQNMSSLLIGIVGAAVTLSAYSQTFISPTQCVTVGLLVLMFGLLVREGL 50

[Close]

BLAST of Spg015442 vs. ExPASy TrEMBL
Match: A0A6P4P6G0 (uncharacterized protein LOC108486781 OS=Gossypium arboreum OX=29729 GN=LOC108486781 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-11
Identity = 41/50 (82.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  MNQNLSSLLIGLVGAAITLSAYSQTLISPTECVTVGLLVLIFGLLVHEAV 51
          MNQN+SSLLIG+VGAA+TLSAYSQT ISPT+CVTVGLLVL+FGLLV E +
Sbjct: 1  MNQNMSSLLIGIVGAAVTLSAYSQTFISPTQCVTVGLLVLMFGLLVREGL 50

[Close]

BLAST of Spg015442 vs. TAIR 10
Match: AT3G29034.1 (unknown protein; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 8.9e-07
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 3  QNLSSLLIGLVGAAITLSAYSQTLISPTECVTVGLLVLIFGLLVHEAVFFFSL 56
          +N+ SL+IGLVG A+TL AYSQT + P + +  GL VL FGLLV E   F SL
Sbjct: 36 RNMQSLVIGLVGGALTLGAYSQTYVDPGKSIGAGLFVLFFGLLVSEG--FISL 86

The following BLAST results are available for this feature:

BLAST of Spg015442 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737855.1	1.0e-12	89.09	uncharacterized protein LOC105435000 [Cucumis sativus]	[more]
XP_016899638.1	1.0e-12	89.09	PREDICTED: uncharacterized protein LOC107990600 [Cucumis melo]	[more]
XP_038905779.1	2.3e-12	87.27	uncharacterized protein LOC120091734 [Benincasa hispida]	[more]
XP_007032590.1	8.6e-12	88.00	PREDICTED: uncharacterized protein LOC18601549 [Theobroma cacao] >EOY03516.1 Unc...	[more]
XP_022159078.1	8.6e-12	88.00	uncharacterized protein LOC111025520 [Momordica charantia]	[more]

BLAST of Spg015442 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg015442 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DUJ5	4.9e-13	89.09	uncharacterized protein LOC107990600 OS=Cucumis melo OX=3656 GN=LOC107990600 PE=...	[more]
A0A061EF06	4.2e-12	88.00	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_018610 PE=4 SV=1	[more]
A0A6J1DXU0	4.2e-12	88.00	uncharacterized protein LOC111025520 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A5D2PYY3	1.6e-11	82.00	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A07G240600v1 P...	[more]
A0A6P4P6G0	1.6e-11	82.00	uncharacterized protein LOC108486781 OS=Gossypium arboreum OX=29729 GN=LOC108486...	[more]

BLAST of Spg015442 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G29034.1	8.9e-07	56.60	unknown protein; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacter...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg015442.1	Spg015442.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane