Spg015434 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg015434
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon protein
Location	scaffold10: 15006916 .. 15010015 (-)
RNA-Seq Expression	Spg015434
Synteny	Spg015434

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCATTATCTTTGCGCCAACCTCCTATTTGTACCAAGTGGACTAAGCACTACACAAGGACTACATCCTCCTCCAGTGTCCAGACATGTTTCTCCTTCTTGGATCCTGATCCTGATGCGGCCATCTACTTATGCAATCACAATAGTTATTAGGTTAATGAGATCTTTCGTAACATACAACACAGTAAGGTCGTACAAAATACATTCCTATCATATTAGGATACACATTAGCTGACATCCATTACATTTACGTTCAAAATATAGGTTCGTAAGTCGATTTACCATGTTCTATTATATGTACACCATAGTAATTTTACAACATAACTCATCCTTTCATGAGGAGTGGGAACAACTACGAATTCATATCCCAAAAAATATAAACAAAAGCATGCGATGTGATGGGATCAACTGTTGTTCCATTCCGTGAACATCTGACTCGCCAATGCATCCCTTAATTGACTCCAAGCAGTTGTGGACTCCACGAATGTGATGTTGTCCGTTGTCATACAATTAGAATCCTGGTCCCCCGGATGAGTGAGCTCGAAATTCGGGTCGTGGCCCATTTCTCGAATGATGAAGTTGTGGAGATAACAATATGTTATTGTTTTTATCTGGACATCGACGGGATAATACGACTTCCCCCACAGAATGGCCCACCGACCCTTCATCACACTGAAAGCTCGTTCTATTACATTATGAGCGGATGAATGTCTCATGTTGAAAAGCTCCTTTGGGGTCGTTGGTGGGTTTCCACCTATCGTGTGCTGCGGTAAGGTGCCATAAATCCCTCAGCATTTGGATAACCGGCGTCGCATAGGTAGTAATAGCCCTTGGGAACCTTCAGCCTAGTCGGATGTGATACTGCATCGCGAAGAACCCTTGAGTTGGATGGAGATCCTTCCCACCTTGGGAATACGAATATGAACTCGCCATTCTGCGAACAAACAACAAAAACATTCGTTGCGATCTCGCACTTCCTCGTCCGGTATCTGGGTCGATCAGCCGCATATACGTTCACCTTGATGTGTGTCCCATCCAGTGCACCTAAACAGTTCTGTGAACATACAAGCGATAGTGTTTTAGTGGTCGAGTATTGAAGTTTAGTTGTCTTCGGACGAACGACAATGTAACAACATTTCATGACCTCGAACCACCTCCATTTCTCGTCCATGCACGTGCTTATAACAGATTTGTAACAGTTCTGGTGGAGCGAGATCGCAACGAATACCTCGTAACGGTTCGTAACAGGTACGTGCACGTGCTCGTAACGATTTCGGCGGGACGAGATCGCAACGTACTCATAACTCGTTACGAGCACGTGCACGGATGAGAGATGGAGGTGTTCAAGGTAATGAAATGTTGTTACATTCTCTTTCGCCCGAAGACAACTAAACTTCAATACTCGACCATTAAAACATTATCCGCTCGTTTGTTCACATAACTGTTTAGGTGCGCCAGATGGGACACACATTAAGGTGAACGTAAGTGCGGCTGATCGACCCAGACACCGGACGAGGAAGTGCGAGATCGCAACGAATGTGTTTGTTGTTTGTTCGCAGAATGGCGAGTTCATATTCGTATTCCCGGGGTGGGAAGGATCTGCATCCAACTCAATGGTTCTTCGCGATGCAGTATCACATCCGACTAGGCTGAAGGTTCCCAAGGGCTACTACTACCTATGCGACGTCAGTTATCCGAATGCTGAGGGATTTCTGGCACCCTACCGCAGCACACGATACCACCTGACGGAGTGGCAAGGTGGAAACCCACCAACGACCCCAAAAGAGCTTTTCAACATGAGACGTTCATCCGCACATAATGTAATAGAACGAGCTTTCGGTGTGTTGAAGGGTCGGTGGGCCATTCTGTGGGGGAAGTCGTACTATCCCGTCGACGTCCAGATAAAAACAATAACAGCGTGTTGTTATCTCCACAACCTCATCATTCGAGAAATGGGACACGACCCGAATTTCAAGCTCACTCATCCGGAGGACCAGGATTCTAACTGTATGACAACGGACAGCATCACATTCGTGGAGTCCACAACTGGTTGGAGTCAATTAAGGGATGCATTGGCGAGTCAGATGTTCGCGGAATGGAACAACAGTTCATCCCATCACATCACATGCTTTTGTTTATATTTTTTGGGATATGAATCCGTAGTTGTTCCCACTCCTCATGAAAGTATGGGTTATGTTGTAAAGTTACTATGGTGTACATATAATAGAACATGGTAAATCGACTTGCGAACCTATATTTTGAACGTAAATGTAATGGATGTCAGCTAATGTGTATCCTATAGGAATGTATTTTGTACGACCTTCTTACTGTGTTGTATGTTACGAAAGATCTCATTAACCTAATACTATTGTGATTGCATATGCAGATGGCCGCATCGGGATCATGATCCAAGAAGGAGAAACATGTCTGGAGATCGGAGGAGGATGCAGTCCTTGTGTAGTGCCTAGTCCACTTGGTACAAATAAGAGGTTAGCGCGGAGATAATGGGACATTTCGACTAGGATTCCAAAACTAGATTGAGAAGATGATGAAAGAACGACTGCCAGGCTGCAACATAGTTGTCAGCCCAAATATTGAGTTCAGGGTAAAGCTCCTGAAAAAACAATACATGACCATTGTTGAGATGATGGGACCAGCTTGTAGTGGGTTCGGGTGGAACGAGGAGAGGAAGTGCATCGAGGCAGAGAAGAAGATCTCTGATGCGTGGGTCGAGGTAAGGCAACCGTGCTCCTATTTATACCGAAACATTTGTGCAATATACTTTCGCTAACGAAATGATGACGTTTCACTTGGAGGGTCACCCACAGGCTAAGGGCCTCCGTAACCGGTCATTCTTGTGGCTTAATGAGCTGGCGTTGGTGTTTGGGAAGGACAGCGCAAGAGGGGGGAGGGCCCCCACTCCTATTGAGCTTACACCGGACTCGAAACCGGTAGCTGACCTTGAAGAGGACATGAACGTAGACTATAAAGATTGTTACGTCCCCAGTCCACCTGTTATTAATCCCATTTCAGAGGAAGAATTTTGTGGGACACCAACTGGCAGAGCATGTGGTGCAGGACCGTCTAGGACACCGTAG

mRNA sequence

ATGTCCCATTATCTTTGCGCCAACCTCCTATTTGTACCAAGTGGACTAAGCACTACACAAGGACTACATCCTCCTCCAGTGTCCAGACATGTTTCTCCTTCTTGGATCCTGATCCTGATGCGGCCATCTACTTATGCAATCACAATAGTTATTAGGTTAATGAGATCTTTCGTAACATACAACACAGTACGTGCACGTGCTCGTAACGATTTCGGCGGGACGAGATCGCAACGTACTCATAACTCGTTACGAGCACGTGCACGGATGAGAGATGGAGGTGTTCAAGATGGCCGCATCGGGATCATGATCCAAGAAGGAGAAACATGTCTGGAGATCGGAGGAGGATGCAGTCCTTGTGTAGTGCCTAGTCCACTTGGTACAAATAAGAGGGTAAAGCTCCTGAAAAAACAATACATGACCATTGTTGAGATGATGGGACCAGCTTGTAGTGGGTTCGGGTGGAACGAGGAGAGGAAGTGCATCGAGGCAGAGAAGAAGATCTCTGATGCGTGGGTCGAGGCTAAGGGCCTCCGTAACCGGTCATTCTTGTGGCTTAATGAGCTGGCGTTGGTGTTTGGGAAGGACAGCGCAAGAGGGGGGAGGGCCCCCACTCCTATTGAGCTTACACCGGACTCGAAACCGGTAGCTGACCTTGAAGAGGACATGAACGTAGACTATAAAGATTGTTACGTCCCCAGTCCACCTGTTATTAATCCCATTTCAGAGGAAGAATTTTGTGGGACACCAACTGGCAGAGCATGTGGTGCAGGACCGTCTAGGACACCGTAG

Coding sequence (CDS)

ATGTCCCATTATCTTTGCGCCAACCTCCTATTTGTACCAAGTGGACTAAGCACTACACAAGGACTACATCCTCCTCCAGTGTCCAGACATGTTTCTCCTTCTTGGATCCTGATCCTGATGCGGCCATCTACTTATGCAATCACAATAGTTATTAGGTTAATGAGATCTTTCGTAACATACAACACAGTACGTGCACGTGCTCGTAACGATTTCGGCGGGACGAGATCGCAACGTACTCATAACTCGTTACGAGCACGTGCACGGATGAGAGATGGAGGTGTTCAAGATGGCCGCATCGGGATCATGATCCAAGAAGGAGAAACATGTCTGGAGATCGGAGGAGGATGCAGTCCTTGTGTAGTGCCTAGTCCACTTGGTACAAATAAGAGGGTAAAGCTCCTGAAAAAACAATACATGACCATTGTTGAGATGATGGGACCAGCTTGTAGTGGGTTCGGGTGGAACGAGGAGAGGAAGTGCATCGAGGCAGAGAAGAAGATCTCTGATGCGTGGGTCGAGGCTAAGGGCCTCCGTAACCGGTCATTCTTGTGGCTTAATGAGCTGGCGTTGGTGTTTGGGAAGGACAGCGCAAGAGGGGGGAGGGCCCCCACTCCTATTGAGCTTACACCGGACTCGAAACCGGTAGCTGACCTTGAAGAGGACATGAACGTAGACTATAAAGATTGTTACGTCCCCAGTCCACCTGTTATTAATCCCATTTCAGAGGAAGAATTTTGTGGGACACCAACTGGCAGAGCATGTGGTGCAGGACCGTCTAGGACACCGTAG

Protein sequence

MSHYLCANLLFVPSGLSTTQGLHPPPVSRHVSPSWILILMRPSTYAITIVIRLMRSFVTYNTVRARARNDFGGTRSQRTHNSLRARARMRDGGVQDGRIGIMIQEGETCLEIGGGCSPCVVPSPLGTNKRVKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVEAKGLRNRSFLWLNELALVFGKDSARGGRAPTPIELTPDSKPVADLEEDMNVDYKDCYVPSPPVINPISEEEFCGTPTGRACGAGPSRTP

Homology

[Close]

BLAST of Spg015434 vs. NCBI nr
Match: TYK26842.1 (uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 5.9e-26
Identity = 67/135 (49.63%), Postives = 89/135 (65.93%), Query Frame = 0


Query: 131 VKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNRSFLWLN 190
           VK+LKKQY TI EMMGP CSGF WN+ERKCIEAEK +S+ WV+    A+ L N+ F +  
Sbjct: 157 VKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFY 216

Query: 191 ELALVFGKDSARGGRAPTPIELTPDSKPVADLEE-DMNVDYKDCYVPSPPVINPISEEEF 250
           +L +VFG+D A GG+  TP+E+   S+   D EE DM ++ +D  +P+P  + P S E+ 
Sbjct: 217 DLEIVFGRDRATGGKCKTPVEM--GSQTARDTEEDDMIINLEDFDIPNPHGLEPPSGEDM 276

Query: 251 CGTPTGRACGAGPSR 261
             TPT  A  AG SR
Sbjct: 277 PSTPTSMAHDAGSSR 289

[Close]

BLAST of Spg015434 vs. NCBI nr
Match: KAA0033487.1 (uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 126.7 bits (317), Expect = 2.9e-25
Identity = 66/135 (48.89%), Postives = 88/135 (65.19%), Query Frame = 0


Query: 131 VKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNRSFLWLN 190
           VK+LKKQY TI EMMGP CSGF WN+ERKCIEAEK +S+ WV+    A+ L N+ F +  
Sbjct: 157 VKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFY 216

Query: 191 ELALVFGKDSARGGRAPTPIELTPDSKPVADLEE-DMNVDYKDCYVPSPPVINPISEEEF 250
           +L +VFG+D A GG+  TP+E+   S+   D EE DM ++ +D  +P+P  + P S E+ 
Sbjct: 217 DLEIVFGRDRATGGKCKTPVEM--GSQTARDTEEDDMIINLEDFDIPNPHGLEPPSGEDM 276

Query: 251 CGTPTGRACGAGPSR 261
             TPT  A  AG  R
Sbjct: 277 PSTPTSMAHDAGSFR 289

[Close]

BLAST of Spg015434 vs. NCBI nr
Match: XP_031741735.1 (uncharacterized protein At2g29880-like [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 8.5e-25
Identity = 66/133 (49.62%), Postives = 88/133 (66.17%), Query Frame = 0


Query: 130 RVKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNRSFLWL 189
           RVK+LKKQY  IVEMMGP+CS FGWNE+RKCIEAEK + D  V+    A+GL N+ F + 
Sbjct: 90  RVKILKKQYTAIVEMMGPSCSRFGWNEKRKCIEAEKFVFDDLVKGHPNARGLLNKPFPYF 149

Query: 190 NELALVFGKDSARGGRAPTPIELTPDSKPVADLEE-DMNVDYKDCYVPSPPVINPISEEE 249
            +L +VFG+D A GGR  TP+E+   S    D+EE DM+++ +D  +P+P  + P S E+
Sbjct: 150 YDLEIVFGRDRATGGRCKTPVEMC--SHNTRDIEEDDMDINLEDFDIPNPHGLEPPSGED 209

Query: 250 FCGTPTGRACGAG 258
              T T  A  AG
Sbjct: 210 MSSTSTSMAHDAG 220

[Close]

BLAST of Spg015434 vs. NCBI nr
Match: TYJ96933.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.0 bits (310), Expect = 1.9e-24
Identity = 66/141 (46.81%), Postives = 86/141 (60.99%), Query Frame = 0


Query: 125 LGTNKRVKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNR 184
           L    RVK LKKQY  I +MMGPACS FGWNEERKCIEAEK + D WV+    A+GL N+
Sbjct: 66  LNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARGLLNK 125

Query: 185 SFLWLNELALVFGKDSARGGRAPTPIELTPDSKPVADLEE-DMNVDYKDCYVPSPPVINP 244
            F +  +L +VFG+D A GGR    +E+   S+   D EE DM+++ +D  +P+P  + P
Sbjct: 126 PFAYFYDLEIVFGRDKATGGRCKPFVEMA--SQTARDTEEDDMDINLEDFDIPNPHGLEP 185

Query: 245 ISEEEFCGTPTGRACGAGPSR 261
            S E+   T       AG SR
Sbjct: 186 PSGEDMPSTLISMTHDAGSSR 204

[Close]

BLAST of Spg015434 vs. NCBI nr
Match: XP_008455678.1 (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 124.0 bits (310), Expect = 1.9e-24
Identity = 66/141 (46.81%), Postives = 86/141 (60.99%), Query Frame = 0


Query: 125 LGTNKRVKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNR 184
           L    RVK LKKQY  I +MMGPACS FGWNEERKCIEAEK + D WV+    A+GL N+
Sbjct: 98  LNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARGLLNK 157

Query: 185 SFLWLNELALVFGKDSARGGRAPTPIELTPDSKPVADLEE-DMNVDYKDCYVPSPPVINP 244
            F +  +L +VFG+D A GGR    +E+   S+   D EE DM+++ +D  +P+P  + P
Sbjct: 158 PFAYFYDLEIVFGRDKATGGRCKPFVEMA--SQTARDTEEDDMDINLEDFDIPNPHGLEP 217

Query: 245 ISEEEFCGTPTGRACGAGPSR 261
            S E+   T       AG SR
Sbjct: 218 PSGEDMPSTLISMTHDAGSSR 236

[Close]

BLAST of Spg015434 vs. ExPASy TrEMBL
Match: A0A5D3DTL0 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00340 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.8e-26
Identity = 67/135 (49.63%), Postives = 89/135 (65.93%), Query Frame = 0


Query: 131 VKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNRSFLWLN 190
           VK+LKKQY TI EMMGP CSGF WN+ERKCIEAEK +S+ WV+    A+ L N+ F +  
Sbjct: 157 VKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFY 216

Query: 191 ELALVFGKDSARGGRAPTPIELTPDSKPVADLEE-DMNVDYKDCYVPSPPVINPISEEEF 250
           +L +VFG+D A GG+  TP+E+   S+   D EE DM ++ +D  +P+P  + P S E+ 
Sbjct: 217 DLEIVFGRDRATGGKCKTPVEM--GSQTARDTEEDDMIINLEDFDIPNPHGLEPPSGEDM 276

Query: 251 CGTPTGRACGAGPSR 261
             TPT  A  AG SR
Sbjct: 277 PSTPTSMAHDAGSSR 289

[Close]

BLAST of Spg015434 vs. ExPASy TrEMBL
Match: A0A5A7SW62 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00210 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-25
Identity = 66/135 (48.89%), Postives = 88/135 (65.19%), Query Frame = 0


Query: 131 VKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNRSFLWLN 190
           VK+LKKQY TI EMMGP CSGF WN+ERKCIEAEK +S+ WV+    A+ L N+ F +  
Sbjct: 157 VKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFY 216

Query: 191 ELALVFGKDSARGGRAPTPIELTPDSKPVADLEE-DMNVDYKDCYVPSPPVINPISEEEF 250
           +L +VFG+D A GG+  TP+E+   S+   D EE DM ++ +D  +P+P  + P S E+ 
Sbjct: 217 DLEIVFGRDRATGGKCKTPVEM--GSQTARDTEEDDMIINLEDFDIPNPHGLEPPSGEDM 276

Query: 251 CGTPTGRACGAGPSR 261
             TPT  A  AG  R
Sbjct: 277 PSTPTSMAHDAGSFR 289

[Close]

BLAST of Spg015434 vs. ExPASy TrEMBL
Match: A0A5D3BC95 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00380 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 9.1e-25
Identity = 66/141 (46.81%), Postives = 86/141 (60.99%), Query Frame = 0


Query: 125 LGTNKRVKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNR 184
           L    RVK LKKQY  I +MMGPACS FGWNEERKCIEAEK + D WV+    A+GL N+
Sbjct: 66  LNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARGLLNK 125

Query: 185 SFLWLNELALVFGKDSARGGRAPTPIELTPDSKPVADLEE-DMNVDYKDCYVPSPPVINP 244
            F +  +L +VFG+D A GGR    +E+   S+   D EE DM+++ +D  +P+P  + P
Sbjct: 126 PFAYFYDLEIVFGRDKATGGRCKPFVEMA--SQTARDTEEDDMDINLEDFDIPNPHGLEP 185

Query: 245 ISEEEFCGTPTGRACGAGPSR 261
            S E+   T       AG SR
Sbjct: 186 PSGEDMPSTLISMTHDAGSSR 204

[Close]

BLAST of Spg015434 vs. ExPASy TrEMBL
Match: A0A1S3C252 (uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 9.1e-25
Identity = 66/141 (46.81%), Postives = 86/141 (60.99%), Query Frame = 0


Query: 125 LGTNKRVKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNR 184
           L    RVK LKKQY  I +MMGPACS FGWNEERKCIEAEK + D WV+    A+GL N+
Sbjct: 98  LNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARGLLNK 157

Query: 185 SFLWLNELALVFGKDSARGGRAPTPIELTPDSKPVADLEE-DMNVDYKDCYVPSPPVINP 244
            F +  +L +VFG+D A GGR    +E+   S+   D EE DM+++ +D  +P+P  + P
Sbjct: 158 PFAYFYDLEIVFGRDKATGGRCKPFVEMA--SQTARDTEEDDMDINLEDFDIPNPHGLEP 217

Query: 245 ISEEEFCGTPTGRACGAGPSR 261
            S E+   T       AG SR
Sbjct: 218 PSGEDMPSTLISMTHDAGSSR 236

[Close]

BLAST of Spg015434 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.0e-24
Identity = 63/130 (48.46%), Postives = 84/130 (64.62%), Query Frame = 0


Query: 136 KQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVE----AKGLRNRSFLWLNELALV 195
           KQY  I EMMGPACSGFGWNE +KCIE EK + D WV+    A+GL N+ F +  +L +V
Sbjct: 184 KQYTAIAEMMGPACSGFGWNEGQKCIEVEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVV 243

Query: 196 FGKDSARGGRAPTPIELTPDSKPVADLEE-DMNVDYKDCYVPSPPVINPISEEEFCGTPT 255
           FG+D A GGR  TP+E++  S+   D EE DM+++ +D  +P+P  + P S E+   TPT
Sbjct: 244 FGRDRATGGRCKTPVEMS--SQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPT 303

Query: 256 GRACGAGPSR 261
                AG SR
Sbjct: 304 SMTHDAGSSR 311

[Close]

BLAST of Spg015434 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 6.7e-04
Identity = 25/77 (32.47%), Postives = 42/77 (54.55%), Query Frame = 0


Query: 130 RVKLLKKQYMTIVEMMGPACSGFGWNEERKCIEAEKKISDAWVEA----KGLRNRSFLWL 189
           R+K LK QY + +++     SGFGW+   K   A  ++   +++A    K LR  +F + 
Sbjct: 73  RMKYLKIQYQSCLDLQ-RFSSGFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDTFEFF 132

Query: 190 NELALVFGKDSARGGRA 203
           +EL ++FG+  A G  A
Sbjct: 133 DELQIIFGEGVATGKNA 148

The following BLAST results are available for this feature:

BLAST of Spg015434 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK26842.1	5.9e-26	49.63	uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]	[more]
KAA0033487.1	2.9e-25	48.89	uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]	[more]
XP_031741735.1	8.5e-25	49.62	uncharacterized protein At2g29880-like [Cucumis sativus]	[more]
TYJ96933.1	1.9e-24	46.81	retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_008455678.1	1.9e-24	46.81	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]

BLAST of Spg015434 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg015434 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DTL0	2.8e-26	49.63	Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7SW62	1.4e-25	48.89	Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3BC95	9.1e-25	46.81	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C252	9.1e-25	46.81	uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 P...	[more]
A0A5D3C7T4	2.0e-24	48.46	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Spg015434 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27260.1	6.7e-04	32.47	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 128..215
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 128..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg015434.1	Spg015434.1	mRNA